Wall clock time and date at job start Mon Mar 30 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47204 * 240.00048 * 3 2 1 5 5 H 1.48506 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47097 * 119.99628 * 3 2 1 7 7 C 1.38806 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99239 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.64986 * 0.04460 * 9 7 2 11 11 C 1.55393 * 104.87351 * 204.09189 * 10 9 7 12 12 C 1.55150 * 101.36715 * 323.01608 * 11 10 9 13 13 H 1.09001 * 110.72265 * 153.94452 * 12 11 10 14 14 N 1.46499 * 110.72360 * 277.04238 * 12 11 10 15 15 C 1.34777 * 120.00199 * 202.56223 * 14 12 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 12 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 14 19 19 C 1.38674 * 120.41587 * 269.71935 * 18 17 15 20 20 C 1.38628 * 118.42074 * 179.78654 * 19 18 17 21 21 C 1.38231 * 119.15871 * 0.46885 * 20 19 18 22 22 N 1.31860 * 120.76104 * 359.77117 * 21 20 19 23 23 C 1.31876 * 121.72660 * 359.97438 * 22 21 20 24 24 C 1.47030 * 125.64681 * 180.02562 * 9 7 2 25 25 H 0.97008 * 119.99681 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.36635 * 322.92793 * 10 9 7 27 27 H 1.08997 * 110.36936 * 85.25527 * 10 9 7 28 28 H 1.09004 * 111.18982 * 204.97726 * 11 10 9 29 29 H 1.09004 * 111.01951 * 80.98303 * 11 10 9 30 30 H 0.97000 * 119.99484 * 22.55320 * 14 12 11 31 31 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 32 32 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 33 33 H 1.07998 * 120.79178 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.41963 * 180.26357 * 20 19 18 35 35 H 1.07994 * 119.61657 * 179.75035 * 21 20 19 36 36 H 1.08007 * 119.61395 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.88242 * 59.55686 * 24 9 7 38 38 H 1.09003 * 109.88210 * 298.39479 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5331 0.0013 11 6 -0.4038 -3.9360 0.6158 12 6 0.7782 -4.7524 0.0296 13 1 1.0250 -5.5934 0.6776 14 7 0.4661 -5.2176 -1.3240 15 6 1.1120 -6.2841 -1.8358 16 8 1.9520 -6.8583 -1.1758 17 6 0.7952 -6.7589 -3.2305 18 6 1.6532 -7.9527 -3.5617 19 6 2.8926 -7.7823 -4.1600 20 6 3.6494 -8.9089 -4.4424 21 6 3.1428 -10.1564 -4.1295 22 7 1.9575 -10.2809 -3.5652 23 6 1.2126 -9.2313 -3.2779 24 6 1.9317 -3.7275 0.0028 25 1 -0.4850 0.8401 0.0004 26 1 -0.5995 -1.7584 0.6163 27 1 -0.5271 -2.4874 -1.0171 28 1 -1.3602 -4.3394 0.2831 29 1 -0.3533 -3.9019 1.7041 30 1 -0.2056 -4.7582 -1.8518 31 1 -0.2564 -7.0398 -3.2886 32 1 0.9971 -5.9579 -3.9416 33 1 3.2612 -6.7952 -4.3967 34 1 4.6210 -8.8133 -4.9041 35 1 3.7244 -11.0393 -4.3500 36 1 0.2469 -9.3727 -2.8153 37 1 2.5577 -3.8503 0.8866 38 1 2.5286 -3.8650 -0.8988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010619881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:14 Heat of formation + Delta-G solvation = 24.948947 kcal Electronic energy + Delta-G solvation = -20636.729599 eV Core-core repulsion = 17479.797354 eV Total energy + Delta-G solvation = -3156.932244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47474 -39.36302 -37.24162 -33.84777 -33.63234 -32.07506 -31.73713 -29.31682 -28.23920 -26.89432 -24.51721 -23.67199 -22.74182 -20.57676 -20.22878 -19.80864 -17.31807 -17.09920 -16.75744 -16.55474 -15.96024 -15.13781 -14.80651 -14.68431 -14.08348 -13.83250 -13.72173 -13.29009 -13.14061 -13.12078 -12.71424 -12.20221 -12.02179 -11.65488 -11.63828 -11.09704 -10.90084 -10.79845 -10.43456 -10.18039 -9.96695 -9.91729 -9.69499 -9.61052 -9.54995 -9.03918 -8.77261 -8.63626 -6.87770 -5.69829 -3.10900 0.98705 1.19659 2.80542 3.36236 3.38539 3.42561 3.43738 3.81137 4.29502 4.46314 4.55172 4.67471 4.87446 4.89151 4.99574 5.19383 5.31741 5.34099 5.41584 5.46342 5.54407 5.65443 5.72947 5.83542 5.99245 6.13668 6.24008 6.32422 6.45832 6.51903 6.58347 6.69124 7.01923 7.38645 7.58183 7.74999 7.80742 7.86135 8.30823 8.44288 9.18329 9.78868 10.43309 11.34328 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.003571 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.164642 B = 7839.162581 C = 8304.033446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.087 0.913 14 N -0.710 5.710 15 C 0.513 3.487 16 O -0.540 6.540 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.062 4.062 20 C -0.171 4.171 21 C 0.092 3.908 22 N -0.486 5.486 23 C 0.111 3.889 24 C 0.128 3.872 25 H 0.252 0.748 26 H 0.108 0.892 27 H 0.011 0.989 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.401 0.599 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.030 0.970 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -14.982 -8.423 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.026 3.974 13 H 0.105 0.895 14 N -0.361 5.361 15 C 0.299 3.701 16 O -0.418 6.418 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.191 4.191 21 C -0.065 4.065 22 N -0.194 5.194 23 C -0.046 4.046 24 C 0.001 3.999 25 H 0.063 0.937 26 H 0.126 0.874 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.235 0.765 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.048 0.952 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.002 -15.998 -7.734 17.769 hybrid contribution 0.577 2.036 -0.528 2.181 sum 0.579 -13.962 -8.261 16.233 Atomic orbital electron populations 1.69772 1.04861 1.24897 1.57775 1.24770 0.95751 0.97689 1.02445 0.86137 0.78399 0.82951 0.77927 1.21259 1.21552 1.21130 1.19047 0.90528 0.82462 1.42982 0.90586 1.44503 1.01822 0.99753 1.86911 1.22031 0.84884 0.92399 0.97974 1.23425 0.95826 0.99143 1.00905 1.21988 0.96827 0.96320 0.82271 0.89459 1.45992 1.41922 1.30732 1.17414 1.20367 0.81496 0.80226 0.88059 1.90715 1.32736 1.56873 1.61427 1.20628 1.00993 0.96884 0.95658 1.20316 0.96047 0.95427 0.99515 1.21488 0.92932 0.99482 0.94870 1.22106 1.01180 0.93625 1.02217 1.22726 0.92152 0.97032 0.94590 1.67667 1.06205 1.34116 1.11444 1.22573 0.99141 0.87453 0.95396 1.21681 0.93897 0.85913 0.98404 0.93686 0.87420 0.97141 0.91671 0.90638 0.76470 0.87633 0.87611 0.84884 0.84826 0.82952 0.83058 0.95179 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.09 55.49 0.56 -25.69 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.19 3.40 -169.77 -0.58 -15.77 16 10 C 0.15 3.48 5.87 -2.27 -0.01 3.46 16 11 C -0.15 -2.71 6.69 -24.32 -0.16 -2.87 16 12 C 0.13 2.31 3.28 -66.10 -0.22 2.09 16 13 H 0.09 1.54 7.62 -51.93 -0.40 1.15 16 14 N -0.71 -10.54 5.10 -52.03 -0.27 -10.81 16 15 C 0.51 7.50 7.82 -10.98 -0.09 7.42 16 16 O -0.54 -10.08 15.72 5.55 0.09 -9.99 16 17 C -0.10 -1.04 5.86 -29.03 -0.17 -1.21 16 18 C -0.11 -1.29 4.39 -104.48 -0.46 -1.75 16 19 C -0.06 -0.69 9.86 -39.28 -0.39 -1.07 16 20 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16 21 C 0.09 0.98 11.18 -17.54 -0.20 0.79 16 22 N -0.49 -6.22 10.36 -13.25 -0.14 -6.35 16 23 C 0.11 1.34 10.86 -17.56 -0.19 1.15 16 24 C 0.13 2.76 6.99 -3.06 -0.02 2.74 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.11 2.81 5.87 -51.93 -0.31 2.51 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.40 5.21 8.63 -40.82 -0.35 4.86 16 31 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.11 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.02 0.55 8.04 -51.93 -0.42 0.13 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -33.34 321.51 -8.30 -41.64 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.24 Total: 3.39 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.55 Total: 1.90 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.42 Total: -58.61 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.34 -8.30 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.589 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds