Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47204 * 240.00048 * 3 2 1 5 5 H 1.48506 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47097 * 119.99628 * 3 2 1 7 7 C 1.38806 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99239 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.64986 * 0.04460 * 9 7 2 11 11 C 1.55393 * 104.87351 * 204.09189 * 10 9 7 12 12 C 1.55150 * 101.36715 * 323.01608 * 11 10 9 13 13 H 1.09001 * 110.72265 * 153.94452 * 12 11 10 14 14 N 1.46499 * 110.72360 * 277.04238 * 12 11 10 15 15 C 1.34777 * 120.00199 * 202.56223 * 14 12 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 12 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 14 19 19 C 1.38674 * 120.41587 * 269.71935 * 18 17 15 20 20 C 1.38628 * 118.42074 * 179.78654 * 19 18 17 21 21 C 1.38231 * 119.15871 * 0.46885 * 20 19 18 22 22 N 1.31860 * 120.76104 * 359.77117 * 21 20 19 23 23 C 1.31876 * 121.72660 * 359.97438 * 22 21 20 24 24 C 1.47030 * 125.64681 * 180.02562 * 9 7 2 25 25 H 0.97008 * 119.99681 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.36635 * 322.92793 * 10 9 7 27 27 H 1.08997 * 110.36936 * 85.25527 * 10 9 7 28 28 H 1.09004 * 111.18982 * 204.97726 * 11 10 9 29 29 H 1.09004 * 111.01951 * 80.98303 * 11 10 9 30 30 H 0.97000 * 119.99484 * 22.55320 * 14 12 11 31 31 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 32 32 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 33 33 H 1.07998 * 120.79178 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.41963 * 180.26357 * 20 19 18 35 35 H 1.07994 * 119.61657 * 179.75035 * 21 20 19 36 36 H 1.08007 * 119.61395 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.88242 * 59.55686 * 24 9 7 38 38 H 1.09003 * 109.88210 * 298.39479 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5331 0.0013 11 6 -0.4038 -3.9360 0.6158 12 6 0.7782 -4.7524 0.0296 13 1 1.0250 -5.5934 0.6776 14 7 0.4661 -5.2176 -1.3240 15 6 1.1120 -6.2841 -1.8358 16 8 1.9520 -6.8583 -1.1758 17 6 0.7952 -6.7589 -3.2305 18 6 1.6532 -7.9527 -3.5617 19 6 2.8926 -7.7823 -4.1600 20 6 3.6494 -8.9089 -4.4424 21 6 3.1428 -10.1564 -4.1295 22 7 1.9575 -10.2809 -3.5652 23 6 1.2126 -9.2313 -3.2779 24 6 1.9317 -3.7275 0.0028 25 1 -0.4850 0.8401 0.0004 26 1 -0.5995 -1.7584 0.6163 27 1 -0.5271 -2.4874 -1.0171 28 1 -1.3602 -4.3394 0.2831 29 1 -0.3533 -3.9019 1.7041 30 1 -0.2056 -4.7582 -1.8518 31 1 -0.2564 -7.0398 -3.2886 32 1 0.9971 -5.9579 -3.9416 33 1 3.2612 -6.7952 -4.3967 34 1 4.6210 -8.8133 -4.9041 35 1 3.7244 -11.0393 -4.3500 36 1 0.2469 -9.3727 -2.8153 37 1 2.5577 -3.8503 0.8866 38 1 2.5286 -3.8650 -0.8988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010619881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = 2.412907 kcal Electronic energy + Delta-G solvation = -20637.706835 eV Core-core repulsion = 17479.797354 eV Total energy + Delta-G solvation = -3157.909480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41877 -40.52676 -38.81277 -35.47398 -34.53953 -33.56962 -32.79177 -31.04039 -29.48482 -28.31599 -26.41519 -24.48963 -23.70539 -22.09101 -21.74786 -21.21115 -18.97625 -18.13914 -17.97495 -17.42092 -17.26593 -16.72200 -16.04067 -15.99622 -15.61893 -15.20546 -14.87945 -14.44424 -14.28557 -14.17573 -13.94007 -13.79751 -13.40437 -13.16024 -12.95982 -12.77857 -12.44469 -12.32732 -12.10857 -12.05002 -11.83275 -11.44188 -11.03421 -10.74924 -10.66363 -10.40341 -10.05257 -9.88295 -8.89630 -7.78591 -5.22316 0.17286 0.37237 1.46900 1.49135 1.55729 1.67103 2.25349 2.49154 2.93776 3.31413 3.52049 3.67934 3.75126 3.80576 3.93856 4.05565 4.08351 4.11074 4.13889 4.31550 4.50374 4.59007 4.65385 4.74266 4.77241 4.89110 4.91923 5.03507 5.05816 5.20152 5.33572 5.43596 5.59544 5.64591 5.80406 5.81264 6.31801 6.62205 7.04188 7.11281 7.29893 7.77086 8.40148 9.22464 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.003571 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.164642 B = 7839.162581 C = 8304.033446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.133 4.133 12 C 0.145 3.855 13 H 0.092 0.908 14 N -0.705 5.705 15 C 0.513 3.487 16 O -0.583 6.583 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.078 4.078 20 C -0.172 4.172 21 C 0.081 3.919 22 N -0.513 5.513 23 C 0.095 3.905 24 C 0.127 3.873 25 H 0.249 0.751 26 H 0.074 0.926 27 H 0.001 0.999 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.412 0.588 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.021 0.979 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -15.609 -9.327 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.172 4.172 12 C 0.040 3.960 13 H 0.110 0.890 14 N -0.356 5.356 15 C 0.301 3.699 16 O -0.463 6.463 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.104 4.104 20 C -0.191 4.191 21 C -0.075 4.075 22 N -0.222 5.222 23 C -0.061 4.061 24 C 0.000 4.000 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.019 0.981 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.249 0.751 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.195 0.805 36 H 0.182 0.818 37 H 0.039 0.961 38 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.196 -16.640 -8.658 18.759 hybrid contribution 0.698 2.199 -0.262 2.322 sum 0.501 -14.441 -8.921 16.982 Atomic orbital electron populations 1.70008 1.05883 1.25190 1.58182 1.25540 0.96689 1.00595 1.02425 0.85164 0.77215 0.78970 0.78025 1.20649 1.21553 1.20616 1.19348 0.90816 0.83985 1.43234 0.91007 1.44759 1.02999 1.00295 1.86825 1.21860 0.83511 0.94553 0.97136 1.23256 0.97495 0.95635 1.00786 1.21675 0.95079 0.95227 0.84065 0.88989 1.45910 1.42248 1.30936 1.16515 1.21098 0.80246 0.79248 0.89262 1.90700 1.34560 1.58103 1.62913 1.20649 1.02745 0.96904 0.92704 1.20486 0.96566 0.95697 0.99818 1.21812 0.93146 1.00427 0.95028 1.22436 1.02089 0.93070 1.01556 1.23225 0.91867 0.98414 0.94026 1.67676 1.07272 1.34815 1.12445 1.22868 0.99850 0.87669 0.95716 1.21768 0.95238 0.85708 0.97263 0.94148 0.90793 0.98070 0.88056 0.90388 0.75131 0.84277 0.85653 0.83921 0.82198 0.80501 0.81821 0.96095 0.97020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.17 10.09 21.65 0.22 -53.95 16 2 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.75 10.27 84.03 0.86 -12.89 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.62 -31.62 3.40 -691.03 -2.35 -33.96 16 10 C 0.15 7.03 5.87 87.03 0.51 7.54 16 11 C -0.13 -4.45 6.69 32.15 0.22 -4.23 16 12 C 0.15 4.93 3.28 46.18 0.15 5.08 16 13 H 0.09 3.11 7.62 -2.39 -0.02 3.10 16 14 N -0.70 -19.51 5.10 -436.93 -2.23 -21.74 16 15 C 0.51 14.08 7.82 87.66 0.69 14.77 16 16 O -0.58 -21.21 15.72 -3.04 -0.05 -21.25 16 17 C -0.09 -1.61 5.86 29.10 0.17 -1.44 16 18 C -0.12 -2.67 4.39 -19.77 -0.09 -2.75 16 19 C -0.08 -1.62 9.86 22.47 0.22 -1.40 16 20 C -0.17 -3.15 10.11 22.36 0.23 -2.93 16 21 C 0.08 1.62 11.18 84.69 0.95 2.57 16 22 N -0.51 -12.63 10.36 -195.85 -2.03 -14.66 16 23 C 0.10 2.18 10.86 84.67 0.92 3.10 16 24 C 0.13 5.48 6.99 86.73 0.61 6.09 16 25 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 26 H 0.07 3.92 5.87 -2.39 -0.01 3.91 16 27 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.41 9.66 8.63 -92.71 -0.80 8.86 16 31 H 0.14 1.56 8.09 -2.38 -0.02 1.54 16 32 H 0.13 1.79 8.09 -2.39 -0.02 1.77 16 33 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 Total: -1.00 -73.03 321.51 1.76 -71.28 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.27 Total: 16.56 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.90 Total: 10.66 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.39 Total: -124.31 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -73.03 1.76 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.688 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds