Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99666 * 2 1 4 4 H 1.48504 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47343 * 299.99984 * 3 2 1 6 6 H 1.48500 * 109.47052 * 60.00228 * 3 2 1 7 7 C 1.38810 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99810 * 207.28688 * 7 2 1 9 9 N 1.36932 * 120.00000 * 27.27513 * 7 2 1 10 10 C 1.47434 * 125.64632 * 13.31675 * 9 7 2 11 11 C 1.55126 * 104.72222 * 155.81137 * 10 9 7 12 12 C 1.55156 * 101.48754 * 37.29406 * 11 10 9 13 13 H 1.08998 * 110.87471 * 205.90002 * 12 11 10 14 14 N 1.46502 * 110.72238 * 82.69212 * 12 11 10 15 15 C 1.34777 * 119.99999 * 160.02348 * 14 12 11 16 16 O 1.21274 * 120.00276 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99847 * 180.02562 * 15 14 12 18 18 C 1.50698 * 109.47366 * 180.02562 * 17 15 14 19 19 C 1.38672 * 120.41736 * 269.72413 * 18 17 15 20 20 C 1.38625 * 118.41594 * 179.77930 * 19 18 17 21 21 C 1.38229 * 119.16340 * 0.47224 * 20 19 18 22 22 N 1.31845 * 120.76461 * 359.76427 * 21 20 19 23 23 C 1.31886 * 121.72741 * 0.02562 * 22 21 20 24 24 C 1.47021 * 125.65156 * 193.61580 * 9 7 2 25 25 H 0.96997 * 119.99781 * 185.85188 * 1 2 3 26 26 H 1.08997 * 110.36409 * 274.74405 * 10 9 7 27 27 H 1.08999 * 110.36308 * 37.06616 * 10 9 7 28 28 H 1.09000 * 111.19658 * 279.19150 * 11 10 9 29 29 H 1.08999 * 110.90589 * 155.27399 * 11 10 9 30 30 H 0.97004 * 119.99671 * 340.02965 * 14 12 11 31 31 H 1.09002 * 109.46837 * 300.00168 * 17 15 14 32 32 H 1.09002 * 109.47105 * 59.99860 * 17 15 14 33 33 H 1.08001 * 120.79267 * 0.02562 * 19 18 17 34 34 H 1.08006 * 120.41810 * 180.21609 * 20 19 18 35 35 H 1.08005 * 119.61885 * 179.75170 * 21 20 19 36 36 H 1.07997 * 119.62375 * 179.97438 * 23 22 21 37 37 H 1.08998 * 109.88098 * 300.44483 * 24 9 7 38 38 H 1.09001 * 109.88151 * 61.45896 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0002 -1.2542 0.4282 9 7 1.4399 -2.3218 -0.5445 10 6 0.2379 -2.3457 -1.3979 11 6 0.3684 -3.6508 -2.2262 12 6 0.9851 -4.6189 -1.1823 13 1 1.5522 -5.4096 -1.6734 14 7 -0.0569 -5.1877 -0.3237 15 6 0.1806 -6.3233 0.3621 16 8 1.2569 -6.8742 0.2689 17 6 -0.8915 -6.9086 1.2448 18 6 -0.3761 -8.1672 1.8939 19 6 -0.5493 -9.3970 1.2770 20 6 -0.0547 -10.5274 1.9087 21 6 0.5814 -10.3934 3.1286 22 7 0.7239 -9.2081 3.6883 23 6 0.2697 -8.1110 3.1143 24 6 1.9210 -3.7000 -0.3692 25 1 -0.4850 -0.8357 0.0856 26 1 -0.6625 -2.3714 -0.7842 27 1 0.2239 -1.4780 -2.0575 28 1 1.0381 -3.5135 -3.0751 29 1 -0.6096 -4.0021 -2.5550 30 1 -0.9178 -4.7469 -0.2490 31 1 -1.1614 -6.1869 2.0157 32 1 -1.7697 -7.1431 0.6431 33 1 -1.0540 -9.4718 0.3250 34 1 -0.1686 -11.5012 1.4554 35 1 0.9661 -11.2697 3.6292 36 1 0.4047 -7.1576 3.6033 37 1 2.9415 -3.7866 -0.7423 38 1 1.8876 -3.9729 0.6856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010619886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = 21.586934 kcal Electronic energy + Delta-G solvation = -20708.957311 eV Core-core repulsion = 17551.879279 eV Total energy + Delta-G solvation = -3157.078032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51448 -39.45946 -37.47286 -34.04595 -33.67250 -32.12831 -31.82545 -29.28139 -28.39585 -26.95609 -24.36597 -23.69850 -22.80506 -20.70689 -20.28588 -19.92310 -17.63094 -17.26571 -17.00841 -16.58709 -16.11451 -15.21525 -14.85550 -14.47762 -14.12042 -13.78595 -13.75174 -13.34854 -13.26792 -13.18925 -13.12289 -12.53314 -12.00584 -11.94412 -11.70657 -11.00181 -10.78797 -10.72576 -10.47730 -10.33471 -10.05700 -10.02085 -9.74527 -9.57254 -9.56038 -9.06829 -8.81038 -8.43264 -6.97330 -6.11759 -3.13634 0.96645 1.16634 2.74020 3.28779 3.51638 3.54364 3.68076 3.77620 4.27529 4.54175 4.57868 4.62484 4.81834 4.86498 4.90662 5.12158 5.16891 5.22147 5.25574 5.33690 5.52745 5.55744 5.63583 5.68133 5.94239 5.99876 6.08442 6.10792 6.22684 6.36090 6.56341 6.63743 6.85836 6.91078 6.97080 7.66048 7.77712 7.86092 8.35905 8.47243 9.00510 9.80249 10.33663 11.22108 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032389 B = 0.003617 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.295881 B = 7739.237581 C = 8115.719244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.069 2.931 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.144 3.856 11 C -0.144 4.144 12 C 0.132 3.868 13 H 0.090 0.910 14 N -0.712 5.712 15 C 0.514 3.486 16 O -0.538 6.538 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.063 4.063 20 C -0.173 4.173 21 C 0.093 3.907 22 N -0.484 5.484 23 C 0.114 3.886 24 C 0.128 3.872 25 H 0.268 0.732 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.400 0.600 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.033 0.967 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 -17.880 -0.003 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.228 4.228 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.222 1.222 7 C -0.461 4.461 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.018 3.982 11 C -0.183 4.183 12 C 0.028 3.972 13 H 0.108 0.892 14 N -0.363 5.363 15 C 0.300 3.700 16 O -0.415 6.415 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.193 4.193 21 C -0.064 4.064 22 N -0.192 5.192 23 C -0.043 4.043 24 C 0.002 3.998 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.051 0.949 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.402 -16.480 0.708 17.072 hybrid contribution -0.636 -1.462 -0.655 1.724 sum -5.038 -17.942 0.052 18.636 Atomic orbital electron populations 1.70750 1.06575 1.30113 1.49059 1.25710 0.96480 1.00901 0.99695 0.83475 0.74396 0.75578 0.76659 1.21869 1.21672 1.22204 1.19837 0.99406 0.87719 1.39092 0.91549 1.44603 1.30935 1.01184 1.56423 1.21602 0.90255 0.94451 0.91893 1.23181 1.00458 0.97017 0.97629 1.21964 0.89148 0.95132 0.90995 0.89231 1.45992 1.17856 1.25503 1.46972 1.20375 0.88754 0.80604 0.80291 1.90718 1.25619 1.61072 1.64073 1.20624 0.98171 0.95602 0.99733 1.20309 1.00195 0.94616 0.96297 1.21423 0.96752 0.91898 0.98838 1.22087 1.00518 0.99541 0.97175 1.22749 0.95385 0.95418 0.92857 1.67690 1.17470 0.98893 1.35183 1.22653 0.92457 0.97072 0.92083 1.21686 0.95512 0.85526 0.97118 0.92063 0.95842 0.92621 0.90143 0.91239 0.76528 0.87402 0.87769 0.85060 0.84876 0.82927 0.82890 0.94942 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 12.82 55.49 0.71 -26.69 16 2 C -0.03 -0.77 5.09 -17.43 -0.09 -0.86 16 3 Si 1.07 25.51 30.00 -169.99 -5.10 20.41 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.33 -9.48 10.05 -15.06 -0.15 -9.63 16 8 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 9 N -0.60 -15.21 3.33 -169.93 -0.57 -15.77 16 10 C 0.14 3.15 5.20 -2.41 -0.01 3.14 16 11 C -0.14 -2.38 6.65 -24.47 -0.16 -2.55 16 12 C 0.13 2.27 3.25 -66.09 -0.21 2.06 16 13 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 14 N -0.71 -10.37 5.11 -52.03 -0.27 -10.64 16 15 C 0.51 7.48 7.82 -10.98 -0.09 7.40 16 16 O -0.54 -9.99 15.76 5.56 0.09 -9.91 16 17 C -0.10 -1.04 5.86 -29.04 -0.17 -1.21 16 18 C -0.11 -1.31 4.39 -104.48 -0.46 -1.77 16 19 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 20 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 21 C 0.09 1.00 11.18 -17.55 -0.20 0.81 16 22 N -0.48 -6.50 10.36 -13.25 -0.14 -6.63 16 23 C 0.11 1.48 10.86 -17.55 -0.19 1.29 16 24 C 0.13 2.79 6.98 -3.06 -0.02 2.77 16 25 H 0.27 7.84 5.83 -40.82 -0.24 7.60 16 26 H 0.02 0.53 6.84 -51.93 -0.36 0.18 16 27 H 0.06 1.36 7.73 -51.93 -0.40 0.96 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.40 5.05 8.62 -40.82 -0.35 4.70 16 31 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.63 8.05 -51.93 -0.42 0.22 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -35.07 321.57 -8.14 -43.21 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.18 Total: 2.82 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.54 Total: -1.65 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.26 Total: -59.74 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.10 Total: 20.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.07 -8.14 -43.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.800 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds