Wall clock time and date at job start Mon Mar 30 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99666 * 2 1 4 4 H 1.48504 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47343 * 299.99984 * 3 2 1 6 6 H 1.48500 * 109.47052 * 60.00228 * 3 2 1 7 7 C 1.38810 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99810 * 207.28688 * 7 2 1 9 9 N 1.36932 * 120.00000 * 27.27513 * 7 2 1 10 10 C 1.47434 * 125.64632 * 13.31675 * 9 7 2 11 11 C 1.55126 * 104.72222 * 155.81137 * 10 9 7 12 12 C 1.55156 * 101.48754 * 37.29406 * 11 10 9 13 13 H 1.08998 * 110.87471 * 205.90002 * 12 11 10 14 14 N 1.46502 * 110.72238 * 82.69212 * 12 11 10 15 15 C 1.34777 * 119.99999 * 160.02348 * 14 12 11 16 16 O 1.21274 * 120.00276 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99847 * 180.02562 * 15 14 12 18 18 C 1.50698 * 109.47366 * 180.02562 * 17 15 14 19 19 C 1.38672 * 120.41736 * 269.72413 * 18 17 15 20 20 C 1.38625 * 118.41594 * 179.77930 * 19 18 17 21 21 C 1.38229 * 119.16340 * 0.47224 * 20 19 18 22 22 N 1.31845 * 120.76461 * 359.76427 * 21 20 19 23 23 C 1.31886 * 121.72741 * 0.02562 * 22 21 20 24 24 C 1.47021 * 125.65156 * 193.61580 * 9 7 2 25 25 H 0.96997 * 119.99781 * 185.85188 * 1 2 3 26 26 H 1.08997 * 110.36409 * 274.74405 * 10 9 7 27 27 H 1.08999 * 110.36308 * 37.06616 * 10 9 7 28 28 H 1.09000 * 111.19658 * 279.19150 * 11 10 9 29 29 H 1.08999 * 110.90589 * 155.27399 * 11 10 9 30 30 H 0.97004 * 119.99671 * 340.02965 * 14 12 11 31 31 H 1.09002 * 109.46837 * 300.00168 * 17 15 14 32 32 H 1.09002 * 109.47105 * 59.99860 * 17 15 14 33 33 H 1.08001 * 120.79267 * 0.02562 * 19 18 17 34 34 H 1.08006 * 120.41810 * 180.21609 * 20 19 18 35 35 H 1.08005 * 119.61885 * 179.75170 * 21 20 19 36 36 H 1.07997 * 119.62375 * 179.97438 * 23 22 21 37 37 H 1.08998 * 109.88098 * 300.44483 * 24 9 7 38 38 H 1.09001 * 109.88151 * 61.45896 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0002 -1.2542 0.4282 9 7 1.4399 -2.3218 -0.5445 10 6 0.2379 -2.3457 -1.3979 11 6 0.3684 -3.6508 -2.2262 12 6 0.9851 -4.6189 -1.1823 13 1 1.5522 -5.4096 -1.6734 14 7 -0.0569 -5.1877 -0.3237 15 6 0.1806 -6.3233 0.3621 16 8 1.2569 -6.8742 0.2689 17 6 -0.8915 -6.9086 1.2448 18 6 -0.3761 -8.1672 1.8939 19 6 -0.5493 -9.3970 1.2770 20 6 -0.0547 -10.5274 1.9087 21 6 0.5814 -10.3934 3.1286 22 7 0.7239 -9.2081 3.6883 23 6 0.2697 -8.1110 3.1143 24 6 1.9210 -3.7000 -0.3692 25 1 -0.4850 -0.8357 0.0856 26 1 -0.6625 -2.3714 -0.7842 27 1 0.2239 -1.4780 -2.0575 28 1 1.0381 -3.5135 -3.0751 29 1 -0.6096 -4.0021 -2.5550 30 1 -0.9178 -4.7469 -0.2490 31 1 -1.1614 -6.1869 2.0157 32 1 -1.7697 -7.1431 0.6431 33 1 -1.0540 -9.4718 0.3250 34 1 -0.1686 -11.5012 1.4554 35 1 0.9661 -11.2697 3.6292 36 1 0.4047 -7.1576 3.6033 37 1 2.9415 -3.7866 -0.7423 38 1 1.8876 -3.9729 0.6856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010619886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:16 Heat of formation + Delta-G solvation = -2.930526 kcal Electronic energy + Delta-G solvation = -20710.020468 eV Core-core repulsion = 17551.879279 eV Total energy + Delta-G solvation = -3158.141189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47884 -40.62169 -39.03536 -35.69898 -34.59023 -33.66980 -32.81089 -31.02388 -29.65797 -28.32545 -26.33737 -24.52077 -23.77399 -22.16808 -21.84693 -21.30877 -19.64781 -18.26725 -18.00793 -17.44816 -17.39074 -16.45229 -16.08301 -16.03274 -15.60659 -15.31639 -15.09521 -14.89444 -14.45957 -14.22359 -13.98512 -13.93832 -13.63640 -13.10878 -12.68745 -12.56471 -12.52912 -12.41958 -12.26529 -11.97825 -11.88339 -11.60134 -11.09873 -10.68703 -10.55500 -10.41897 -10.14600 -9.92145 -9.05273 -8.35454 -5.33880 0.14117 0.36141 1.56970 1.60606 1.64550 1.81527 2.17943 2.61711 2.90163 3.16931 3.47384 3.48543 3.62174 3.70700 3.88617 3.92870 3.99280 4.08602 4.11903 4.17062 4.44072 4.47669 4.53604 4.55087 4.75602 4.80041 4.84184 4.91872 4.92726 5.06092 5.17833 5.25192 5.29635 5.51938 5.62499 5.78733 6.31376 6.53618 6.89011 7.02312 7.22966 7.68103 8.24077 8.98568 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032389 B = 0.003617 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.295881 B = 7739.237581 C = 8115.719244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.073 4.073 3 Si 1.118 2.882 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.290 1.290 7 C -0.351 4.351 8 H 0.051 0.949 9 N -0.624 5.624 10 C 0.145 3.855 11 C -0.121 4.121 12 C 0.148 3.852 13 H 0.099 0.901 14 N -0.707 5.707 15 C 0.514 3.486 16 O -0.581 6.581 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.168 4.168 21 C 0.079 3.921 22 N -0.518 5.518 23 C 0.086 3.914 24 C 0.126 3.874 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.412 0.588 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.178 0.822 36 H 0.148 0.852 37 H 0.023 0.977 38 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -19.277 -1.257 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.269 4.269 3 Si 0.943 3.057 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.479 4.479 8 H 0.069 0.931 9 N -0.352 5.352 10 C 0.020 3.980 11 C -0.159 4.159 12 C 0.042 3.958 13 H 0.117 0.883 14 N -0.358 5.358 15 C 0.302 3.698 16 O -0.461 6.461 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.095 4.095 20 C -0.188 4.188 21 C -0.078 4.078 22 N -0.226 5.226 23 C -0.070 4.070 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.249 0.751 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.195 0.805 36 H 0.166 0.834 37 H 0.041 0.959 38 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -5.633 -17.894 -0.547 18.767 hybrid contribution -0.227 -1.114 -0.218 1.158 sum -5.860 -19.008 -0.765 19.905 Atomic orbital electron populations 1.70847 1.07237 1.29758 1.50831 1.27033 0.96678 1.03956 0.99207 0.82814 0.73956 0.72036 0.76894 1.20480 1.20911 1.21654 1.20033 0.99083 0.89489 1.39343 0.93079 1.44838 1.31820 1.01689 1.56818 1.21592 0.88744 0.96180 0.91492 1.23076 1.02905 0.93312 0.96637 1.21682 0.89119 0.94485 0.90540 0.88324 1.45921 1.17677 1.25559 1.46679 1.21102 0.89016 0.79940 0.79767 1.90702 1.27681 1.62262 1.65415 1.20651 0.97650 0.95127 0.99589 1.20466 1.00310 0.95837 0.95971 1.21841 0.96485 0.91528 0.99688 1.22487 0.98933 1.00949 0.96407 1.23276 0.95456 0.95336 0.93738 1.67644 1.18602 0.99922 1.36475 1.22757 0.93830 0.97099 0.93307 1.21776 0.96464 0.85229 0.96565 0.92937 0.96421 0.95707 0.89275 0.87080 0.75122 0.86108 0.83879 0.82462 0.81513 0.80542 0.83450 0.95928 0.97892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 12.82 21.65 0.28 -56.41 16 2 C -0.07 -4.18 5.09 84.86 0.43 -3.75 16 3 Si 1.12 51.78 30.00 68.60 2.06 53.83 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.35 -20.46 10.05 84.03 0.84 -19.62 16 8 H 0.05 3.05 7.96 -2.91 -0.02 3.03 16 9 N -0.62 -32.00 3.33 -691.54 -2.30 -34.30 16 10 C 0.14 6.34 5.20 86.93 0.45 6.79 16 11 C -0.12 -3.71 6.65 32.06 0.21 -3.50 16 12 C 0.15 4.84 3.25 46.18 0.15 4.99 16 13 H 0.10 3.16 7.69 -2.39 -0.02 3.14 16 14 N -0.71 -19.21 5.11 -436.92 -2.23 -21.44 16 15 C 0.51 14.13 7.82 87.66 0.69 14.81 16 16 O -0.58 -21.20 15.76 -3.01 -0.05 -21.25 16 17 C -0.09 -1.65 5.86 29.10 0.17 -1.48 16 18 C -0.12 -2.71 4.39 -19.77 -0.09 -2.80 16 19 C -0.07 -1.26 9.86 22.47 0.22 -1.04 16 20 C -0.17 -2.79 10.11 22.36 0.23 -2.56 16 21 C 0.08 1.60 11.18 84.69 0.95 2.54 16 22 N -0.52 -13.95 10.36 -195.84 -2.03 -15.98 16 23 C 0.09 2.26 10.86 84.67 0.92 3.18 16 24 C 0.13 5.57 6.98 86.73 0.61 6.18 16 25 H 0.26 15.50 5.83 -92.71 -0.54 14.96 16 26 H 0.02 0.81 6.84 -2.39 -0.02 0.79 16 27 H 0.02 1.22 7.73 -2.39 -0.02 1.20 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.41 9.33 8.62 -92.71 -0.80 8.53 16 31 H 0.12 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.14 1.50 8.09 -2.39 -0.02 1.48 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 Total: -1.00 -78.78 321.57 2.00 -76.78 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.49 Total: 14.99 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.78 Total: 3.76 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.29 Total: -128.12 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.83 kcal Total: -78.78 2.00 -76.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010619886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.852 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds