Wall clock time and date at job start Mon Mar 30 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00482 * 2 1 4 4 H 1.48504 * 109.47231 * 239.99815 * 3 2 1 5 5 H 1.48498 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47150 * 120.00053 * 3 2 1 7 7 C 1.38821 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 164.61546 * 7 2 1 9 9 N 1.36933 * 119.99750 * 344.62040 * 7 2 1 10 10 C 1.47164 * 120.70856 * 153.27419 * 9 7 2 11 11 C 1.53885 * 108.03043 * 132.75234 * 10 9 7 12 12 H 1.08998 * 112.09771 * 181.91803 * 11 10 9 13 13 C 1.54799 * 107.88247 * 306.48264 * 11 10 9 14 14 C 1.54274 * 104.72932 * 89.01361 * 13 11 10 15 15 C 1.54543 * 104.94731 * 0.07758 * 14 13 11 16 16 H 1.09001 * 112.18371 * 146.35336 * 15 14 13 17 17 C 1.48368 * 120.34817 * 333.11326 * 9 7 2 18 18 N 1.48302 * 107.20931 * 58.36320 * 11 10 9 19 19 C 1.34776 * 128.07816 * 106.72410 * 18 11 10 20 20 O 1.21693 * 119.99943 * 173.34448 * 19 18 11 21 21 C 1.46680 * 119.99863 * 353.34137 * 19 18 11 22 22 C 1.37872 * 126.23238 * 171.02733 * 21 19 18 23 23 C 1.39838 * 107.08098 * 179.84968 * 22 21 19 24 24 C 1.35444 * 107.86749 * 0.42190 * 23 22 21 25 25 N 1.35537 * 108.87256 * 359.73601 * 24 23 22 26 26 H 0.97000 * 125.67817 * 179.97438 * 25 24 23 27 27 H 0.97009 * 119.99399 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.74763 * 13.12042 * 10 9 7 29 29 H 1.08992 * 109.79306 * 252.40997 * 10 9 7 30 30 H 1.09001 * 110.40053 * 330.21722 * 13 11 10 31 31 H 1.09005 * 110.44614 * 207.83227 * 13 11 10 32 32 H 1.09007 * 110.36170 * 241.17638 * 14 13 11 33 33 H 1.09007 * 110.36083 * 118.97870 * 14 13 11 34 34 H 1.08998 * 109.49397 * 107.72625 * 17 9 7 35 35 H 1.08997 * 110.61336 * 346.60436 * 17 9 7 36 36 H 1.07997 * 126.45575 * 359.96926 * 22 21 19 37 37 H 1.08009 * 126.06068 * 180.13983 * 23 22 21 38 38 H 1.08004 * 125.56377 * 179.77682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0612 -1.2192 -0.2476 9 7 1.3621 -2.3667 0.3156 10 6 1.8369 -3.6568 -0.2097 11 6 1.8849 -4.6579 0.9580 12 1 2.2618 -5.6324 0.6474 13 6 2.7293 -4.0263 2.0912 14 6 1.7150 -3.2323 2.9402 15 6 0.3524 -3.4566 2.2465 16 1 -0.4719 -3.4878 2.9589 17 6 0.1692 -2.3458 1.1975 18 7 0.5157 -4.7403 1.5218 19 6 -0.3727 -5.7469 1.4037 20 8 -1.4161 -5.7141 2.0292 21 6 -0.0820 -6.8819 0.5212 22 6 -0.8058 -8.0520 0.4331 23 6 -0.1808 -8.8501 -0.5300 24 6 0.8955 -8.1728 -0.9962 25 7 0.9668 -6.9752 -0.3655 26 1 1.6442 -6.2971 -0.5139 27 1 -0.4850 0.8402 0.0004 28 1 2.8340 -3.5374 -0.6337 29 1 1.1516 -4.0178 -0.9765 30 1 3.4826 -3.3570 1.6758 31 1 3.2014 -4.8033 2.6926 32 1 1.9697 -2.1724 2.9423 33 1 1.6898 -3.6176 3.9596 34 1 -0.7245 -2.5423 0.6052 35 1 0.0770 -1.3806 1.6954 36 1 -1.6901 -8.3037 0.9997 37 1 -0.4973 -9.8342 -0.8430 38 1 1.5842 -8.5286 -1.7483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017350612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:20 Heat of formation + Delta-G solvation = 61.982044 kcal Electronic energy + Delta-G solvation = -22235.509379 eV Core-core repulsion = 19080.183010 eV Total energy + Delta-G solvation = -3155.326369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27567 -39.73590 -37.55365 -34.16499 -31.83221 -31.34739 -30.63625 -30.35105 -28.84437 -26.35965 -23.79739 -23.65999 -22.03487 -20.99073 -20.40147 -19.93179 -19.05559 -17.65894 -16.54919 -15.93675 -15.26152 -14.94626 -14.62335 -14.52778 -13.83239 -13.66537 -13.43083 -13.08928 -12.99518 -12.78103 -12.46218 -12.25212 -12.12466 -12.02669 -11.60400 -11.21036 -10.90584 -10.67459 -10.58005 -10.45027 -10.08956 -9.95698 -9.78902 -9.63614 -8.92237 -8.63721 -8.40315 -8.05482 -6.81368 -5.89449 -3.34139 1.68943 2.84730 3.14906 3.30644 3.36136 3.38172 3.38902 3.69088 4.36375 4.70670 4.88800 5.03899 5.17115 5.23336 5.27655 5.40588 5.42703 5.55154 5.65736 5.67900 5.92813 6.04795 6.15580 6.18728 6.24188 6.27804 6.32731 6.46295 6.52844 6.57001 6.82483 6.86586 7.02999 7.20742 7.44501 7.47474 7.65454 7.99412 8.24872 8.51502 9.03433 9.66867 10.23897 11.18851 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.005506 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.957605 B = 5084.294485 C = 5247.527900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.586 5.586 10 C 0.135 3.865 11 C 0.096 3.904 12 H 0.078 0.922 13 C -0.108 4.108 14 C -0.112 4.112 15 C 0.106 3.894 16 H 0.091 0.909 17 C 0.174 3.826 18 N -0.607 5.607 19 C 0.602 3.398 20 O -0.543 6.543 21 C -0.038 4.038 22 C -0.119 4.119 23 C -0.213 4.213 24 C 0.009 3.991 25 N -0.541 5.541 26 H 0.419 0.581 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 -12.650 0.927 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.007 3.993 11 C -0.010 4.010 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.151 4.151 15 C 0.003 3.997 16 H 0.109 0.891 17 C 0.049 3.951 18 N -0.340 5.340 19 C 0.392 3.608 20 O -0.421 6.421 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.238 4.238 24 C -0.126 4.126 25 N -0.142 5.142 26 H 0.263 0.737 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.790 -12.367 1.233 13.319 hybrid contribution 0.729 1.088 -0.344 1.354 sum 5.519 -11.279 0.889 12.588 Atomic orbital electron populations 1.70009 1.05280 1.25911 1.53353 1.25066 0.95298 0.98438 1.00484 0.86344 0.78850 0.83247 0.78120 1.20916 1.21594 1.20902 1.19102 0.92007 0.84242 1.43479 0.91461 1.44274 1.32249 1.00942 1.53474 1.21494 0.98401 0.87581 0.91817 1.23278 0.82517 0.98025 0.97205 0.90450 1.22313 0.97848 0.98697 0.95735 1.22322 0.94073 1.01815 0.96877 1.23255 0.97755 0.83211 0.95509 0.89121 1.21524 0.88669 0.95461 0.89477 1.49118 1.14832 1.17655 1.52384 1.16652 0.83055 0.80024 0.81086 1.90798 1.25445 1.78458 1.47366 1.20545 0.94825 0.98927 1.00875 1.21260 1.00460 0.92349 1.00457 1.20837 0.98647 1.01534 1.02743 1.22028 1.01978 0.87052 1.01590 1.42867 1.23457 1.16309 1.31535 0.73715 0.93320 0.91585 0.96490 0.89664 0.92704 0.89335 0.92880 0.95464 0.88745 0.83768 0.84224 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 11.13 55.49 0.62 -24.64 16 2 C 0.01 0.17 4.97 -17.43 -0.09 0.08 16 3 Si 0.90 20.64 29.58 -169.99 -5.03 15.61 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.52 9.64 -15.06 -0.15 -6.66 16 8 H 0.07 1.64 7.87 -52.48 -0.41 1.22 16 9 N -0.59 -13.44 2.31 -170.10 -0.39 -13.83 16 10 C 0.13 2.52 5.74 -3.22 -0.02 2.50 16 11 C 0.10 1.52 3.23 -65.53 -0.21 1.30 16 12 H 0.08 1.02 5.10 -51.93 -0.26 0.75 16 13 C -0.11 -1.64 6.20 -25.12 -0.16 -1.80 16 14 C -0.11 -1.91 6.17 -25.25 -0.16 -2.06 16 15 C 0.11 2.07 4.09 -65.66 -0.27 1.81 16 16 H 0.09 1.79 7.90 -51.93 -0.41 1.38 16 17 C 0.17 4.05 4.61 -2.55 -0.01 4.04 16 18 N -0.61 -11.25 2.75 -154.40 -0.43 -11.68 16 19 C 0.60 11.78 7.87 -12.85 -0.10 11.68 16 20 O -0.54 -12.21 17.20 5.20 0.09 -12.12 16 21 C -0.04 -0.63 6.86 -81.98 -0.56 -1.19 16 22 C -0.12 -1.79 10.67 -39.12 -0.42 -2.20 16 23 C -0.21 -2.59 10.81 -39.98 -0.43 -3.02 16 24 C 0.01 0.11 11.89 -16.91 -0.20 -0.10 16 25 N -0.54 -7.19 5.40 -9.39 -0.05 -7.24 16 26 H 0.42 5.08 5.23 -40.82 -0.21 4.87 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 29 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.08 1.33 7.85 -51.93 -0.41 0.93 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.63 7.83 -51.93 -0.41 1.22 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 36 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 38 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -30.81 303.63 -8.34 -39.15 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.96 Total: 5.80 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.77 Total: 4.38 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.25 Total: -57.39 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.81 -8.34 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017350612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.131 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds