Wall clock time and date at job start Mon Mar 30 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00482 * 2 1 4 4 H 1.48504 * 109.47231 * 239.99815 * 3 2 1 5 5 H 1.48498 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47150 * 120.00053 * 3 2 1 7 7 C 1.38821 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 164.61546 * 7 2 1 9 9 N 1.36933 * 119.99750 * 344.62040 * 7 2 1 10 10 C 1.47164 * 120.70856 * 153.27419 * 9 7 2 11 11 C 1.53885 * 108.03043 * 132.75234 * 10 9 7 12 12 H 1.08998 * 112.09771 * 181.91803 * 11 10 9 13 13 C 1.54799 * 107.88247 * 306.48264 * 11 10 9 14 14 C 1.54274 * 104.72932 * 89.01361 * 13 11 10 15 15 C 1.54543 * 104.94731 * 0.07758 * 14 13 11 16 16 H 1.09001 * 112.18371 * 146.35336 * 15 14 13 17 17 C 1.48368 * 120.34817 * 333.11326 * 9 7 2 18 18 N 1.48302 * 107.20931 * 58.36320 * 11 10 9 19 19 C 1.34776 * 128.07816 * 106.72410 * 18 11 10 20 20 O 1.21693 * 119.99943 * 173.34448 * 19 18 11 21 21 C 1.46680 * 119.99863 * 353.34137 * 19 18 11 22 22 C 1.37872 * 126.23238 * 171.02733 * 21 19 18 23 23 C 1.39838 * 107.08098 * 179.84968 * 22 21 19 24 24 C 1.35444 * 107.86749 * 0.42190 * 23 22 21 25 25 N 1.35537 * 108.87256 * 359.73601 * 24 23 22 26 26 H 0.97000 * 125.67817 * 179.97438 * 25 24 23 27 27 H 0.97009 * 119.99399 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.74763 * 13.12042 * 10 9 7 29 29 H 1.08992 * 109.79306 * 252.40997 * 10 9 7 30 30 H 1.09001 * 110.40053 * 330.21722 * 13 11 10 31 31 H 1.09005 * 110.44614 * 207.83227 * 13 11 10 32 32 H 1.09007 * 110.36170 * 241.17638 * 14 13 11 33 33 H 1.09007 * 110.36083 * 118.97870 * 14 13 11 34 34 H 1.08998 * 109.49397 * 107.72625 * 17 9 7 35 35 H 1.08997 * 110.61336 * 346.60436 * 17 9 7 36 36 H 1.07997 * 126.45575 * 359.96926 * 22 21 19 37 37 H 1.08009 * 126.06068 * 180.13983 * 23 22 21 38 38 H 1.08004 * 125.56377 * 179.77682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0612 -1.2192 -0.2476 9 7 1.3621 -2.3667 0.3156 10 6 1.8369 -3.6568 -0.2097 11 6 1.8849 -4.6579 0.9580 12 1 2.2618 -5.6324 0.6474 13 6 2.7293 -4.0263 2.0912 14 6 1.7150 -3.2323 2.9402 15 6 0.3524 -3.4566 2.2465 16 1 -0.4719 -3.4878 2.9589 17 6 0.1692 -2.3458 1.1975 18 7 0.5157 -4.7403 1.5218 19 6 -0.3727 -5.7469 1.4037 20 8 -1.4161 -5.7141 2.0292 21 6 -0.0820 -6.8819 0.5212 22 6 -0.8058 -8.0520 0.4331 23 6 -0.1808 -8.8501 -0.5300 24 6 0.8955 -8.1728 -0.9962 25 7 0.9668 -6.9752 -0.3655 26 1 1.6442 -6.2971 -0.5139 27 1 -0.4850 0.8402 0.0004 28 1 2.8340 -3.5374 -0.6337 29 1 1.1516 -4.0178 -0.9765 30 1 3.4826 -3.3570 1.6758 31 1 3.2014 -4.8033 2.6926 32 1 1.9697 -2.1724 2.9423 33 1 1.6898 -3.6176 3.9596 34 1 -0.7245 -2.5423 0.6052 35 1 0.0770 -1.3806 1.6954 36 1 -1.6901 -8.3037 0.9997 37 1 -0.4973 -9.8342 -0.8430 38 1 1.5842 -8.5286 -1.7483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017350612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:20 Heat of formation + Delta-G solvation = 42.846727 kcal Electronic energy + Delta-G solvation = -22236.339149 eV Core-core repulsion = 19080.183010 eV Total energy + Delta-G solvation = -3156.156139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45551 -41.11245 -39.10060 -35.97005 -33.18285 -33.08759 -32.09429 -31.70132 -29.98376 -28.13146 -25.36981 -25.24049 -23.58716 -22.10908 -21.77969 -21.00605 -20.55699 -19.22387 -18.10926 -17.43518 -16.88073 -16.45295 -16.13336 -15.95229 -15.36381 -14.97050 -14.84554 -14.69960 -14.43343 -14.16422 -13.74733 -13.58935 -13.51066 -13.24579 -13.15636 -12.91960 -12.65777 -12.33659 -12.17745 -12.13719 -11.81605 -11.65955 -11.23992 -11.18174 -10.60722 -10.01072 -9.90708 -9.17985 -8.71315 -7.87747 -5.35053 0.46992 1.49124 1.51258 1.57691 1.80475 1.86800 2.23214 2.35882 2.50260 3.26948 3.35081 3.51944 3.72030 3.77804 3.98419 4.13421 4.22671 4.34944 4.43418 4.48290 4.51393 4.58371 4.75881 4.76149 4.93666 4.99690 5.05113 5.11868 5.15140 5.27225 5.34687 5.49857 5.51779 5.64755 5.80237 5.96335 6.29986 6.48542 6.57836 7.03314 7.05824 7.75730 8.31211 9.19078 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.005506 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.957605 B = 5084.294485 C = 5247.527900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.083 0.917 9 N -0.597 5.597 10 C 0.131 3.869 11 C 0.106 3.894 12 H 0.116 0.884 13 C -0.101 4.101 14 C -0.105 4.105 15 C 0.108 3.892 16 H 0.078 0.922 17 C 0.190 3.810 18 N -0.610 5.610 19 C 0.594 3.406 20 O -0.589 6.589 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.221 4.221 24 C 0.040 3.960 25 N -0.537 5.537 26 H 0.424 0.576 27 H 0.248 0.752 28 H 0.091 0.909 29 H 0.004 0.996 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.075 0.925 34 H -0.023 1.023 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.169 0.831 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -15.044 0.032 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.100 0.900 9 N -0.321 5.321 10 C 0.005 3.995 11 C 0.001 3.999 12 H 0.134 0.866 13 C -0.139 4.139 14 C -0.144 4.144 15 C 0.003 3.997 16 H 0.096 0.904 17 C 0.063 3.937 18 N -0.341 5.341 19 C 0.386 3.614 20 O -0.471 6.471 21 C -0.193 4.193 22 C -0.151 4.151 23 C -0.245 4.245 24 C -0.096 4.096 25 N -0.139 5.139 26 H 0.268 0.732 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.022 0.978 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.093 0.907 34 H -0.005 1.005 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.187 0.813 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.138 -14.786 0.328 16.880 hybrid contribution -0.318 1.703 -0.166 1.741 sum 7.819 -13.082 0.162 15.242 Atomic orbital electron populations 1.70205 1.07017 1.25872 1.55885 1.25829 0.95832 1.01674 1.01294 0.85325 0.77360 0.79102 0.78527 1.20034 1.23047 1.19879 1.19538 0.92652 0.84935 1.41277 0.89978 1.44449 1.31639 1.02219 1.53792 1.21707 0.98968 0.86156 0.92715 1.23318 0.81310 0.99071 0.96182 0.86638 1.22341 0.97044 0.99259 0.95295 1.22243 0.92587 1.01337 0.98214 1.22990 0.99364 0.82901 0.94405 0.90369 1.21112 0.87367 0.95498 0.89698 1.49175 1.15894 1.16811 1.52253 1.17210 0.82391 0.80798 0.80975 1.90751 1.27220 1.79705 1.49418 1.20139 0.97563 0.98617 1.02991 1.21508 1.00175 0.92557 1.00889 1.21213 0.98712 1.02622 1.01908 1.22875 1.01427 0.85132 1.00205 1.42829 1.22697 1.17266 1.31085 0.73187 0.94300 0.89093 0.97824 0.89463 0.89376 0.91074 0.90669 1.00454 0.91626 0.84509 0.81347 0.76616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 11.13 21.65 0.24 -55.17 16 2 C -0.05 -2.73 4.97 84.87 0.42 -2.31 16 3 Si 0.97 42.93 29.58 68.60 2.03 44.96 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.25 -12.75 9.64 84.04 0.81 -11.94 16 8 H 0.08 3.83 7.87 -2.91 -0.02 3.81 16 9 N -0.60 -27.66 2.31 -692.07 -1.60 -29.26 16 10 C 0.13 4.70 5.74 86.55 0.50 5.19 16 11 C 0.11 3.10 3.23 45.56 0.15 3.25 16 12 H 0.12 2.56 5.10 -2.39 -0.01 2.55 16 13 C -0.10 -2.76 6.20 31.64 0.20 -2.57 16 14 C -0.11 -3.47 6.17 31.55 0.19 -3.28 16 15 C 0.11 4.36 4.09 45.47 0.19 4.54 16 16 H 0.08 3.31 7.90 -2.39 -0.02 3.29 16 17 C 0.19 9.34 4.61 86.32 0.40 9.74 16 18 N -0.61 -22.60 2.75 -760.63 -2.10 -24.70 16 19 C 0.59 23.69 7.87 86.45 0.68 24.37 16 20 O -0.59 -27.89 17.20 -4.33 -0.07 -27.96 16 21 C -0.08 -2.58 6.86 40.35 0.28 -2.30 16 22 C -0.12 -3.58 10.67 22.57 0.24 -3.34 16 23 C -0.22 -4.55 10.81 22.01 0.24 -4.31 16 24 C 0.04 0.70 11.89 83.47 0.99 1.69 16 25 N -0.54 -12.53 5.40 -183.62 -0.99 -13.52 16 26 H 0.42 8.69 5.23 -92.71 -0.49 8.21 16 27 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 28 H 0.09 2.82 7.96 -2.38 -0.02 2.80 16 29 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 30 H 0.09 2.41 7.85 -2.39 -0.02 2.39 16 31 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 2.60 7.83 -2.38 -0.02 2.58 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 35 H 0.07 3.57 6.41 -2.39 -0.02 3.56 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.22 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -71.90 303.63 3.38 -68.52 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.59 Total: 18.40 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 5.28 Total: 18.74 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -4.44 Total: -122.65 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.07 Total: -27.96 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -71.90 3.38 -68.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017350612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.363 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds