Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48506 * 109.46830 * 269.99747 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99344 * 3 2 1 6 6 H 1.48492 * 109.47479 * 149.99501 * 3 2 1 7 7 C 1.38812 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00155 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00432 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00276 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.92089 * 322.55367 * 10 9 7 12 12 C 1.55165 * 111.00397 * 86.45348 * 10 9 7 13 13 C 1.54327 * 102.94078 * 153.57581 * 12 10 9 14 14 N 1.47022 * 107.27336 * 337.80587 * 13 12 10 15 15 C 1.34776 * 125.64758 * 178.97550 * 14 13 12 16 16 O 1.21278 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99804 * 359.97438 * 15 14 13 18 18 C 1.50703 * 109.46792 * 180.02562 * 17 15 14 19 19 C 1.38678 * 120.41501 * 269.71761 * 18 17 15 20 20 C 1.38632 * 118.41515 * 179.78163 * 19 18 17 21 21 C 1.38222 * 119.16161 * 0.47676 * 20 19 18 22 22 N 1.31851 * 120.76602 * 359.76859 * 21 20 19 23 23 C 1.31882 * 121.72476 * 359.97438 * 22 21 20 24 24 C 1.47425 * 108.70334 * 358.94217 * 14 13 12 25 25 H 0.97003 * 120.00673 * 0.02562 * 1 2 3 26 26 H 0.97006 * 120.00062 * 0.02562 * 9 7 2 27 27 H 1.08993 * 110.71917 * 35.21311 * 12 10 9 28 28 H 1.09002 * 110.71751 * 271.93883 * 12 10 9 29 29 H 1.08997 * 109.87800 * 97.22770 * 13 12 10 30 30 H 1.08998 * 109.87662 * 218.38556 * 13 12 10 31 31 H 1.09002 * 109.47258 * 299.99966 * 17 15 14 32 32 H 1.08999 * 109.47362 * 60.00045 * 17 15 14 33 33 H 1.07999 * 120.79000 * 0.02927 * 19 18 17 34 34 H 1.08001 * 120.41528 * 180.26828 * 20 19 18 35 35 H 1.08002 * 119.61547 * 179.74787 * 21 20 19 36 36 H 1.08005 * 119.61771 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.36855 * 142.96531 * 24 14 13 38 38 H 1.08997 * 110.36655 * 265.29403 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.6064 -3.2117 0.6216 12 6 4.3131 -2.9983 -1.4431 13 6 5.5908 -3.8554 -1.3236 14 7 6.3226 -3.3853 -0.1383 15 6 7.4839 -3.8929 0.3204 16 8 8.0008 -3.4240 1.3122 17 6 8.1398 -5.0431 -0.3993 18 6 9.4147 -5.4186 0.3113 19 6 10.6169 -4.8251 -0.0430 20 6 11.7636 -5.1981 0.6410 21 6 11.6727 -6.1496 1.6395 22 7 10.5130 -6.6967 1.9463 23 6 9.4013 -6.3625 1.3203 24 6 5.5762 -2.2663 0.4651 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 4.4665 -2.1721 -2.1373 28 1 3.4655 -3.6103 -1.7517 29 1 5.3230 -4.9049 -1.2019 30 1 6.2067 -3.7287 -2.2140 31 1 7.4642 -5.8984 -0.4090 32 1 8.3676 -4.7483 -1.4236 33 1 10.6582 -4.0870 -0.8303 34 1 12.7164 -4.7533 0.3945 35 1 12.5621 -6.4486 2.1743 36 1 8.4698 -6.8327 1.5990 37 1 5.6400 -2.3101 1.5523 38 1 5.9599 -1.3137 0.0998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018716046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = 19.495914 kcal Electronic energy + Delta-G solvation = -20361.222155 eV Core-core repulsion = 17204.053449 eV Total energy + Delta-G solvation = -3157.168706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62297 -39.64319 -37.47342 -34.34092 -33.75580 -32.15116 -31.66410 -29.96895 -28.91880 -27.37901 -23.86965 -23.77650 -22.79535 -22.25701 -20.27278 -19.19765 -17.79627 -17.29538 -17.11393 -16.74843 -16.15462 -15.61903 -14.93740 -14.65990 -14.11087 -14.06039 -13.69885 -13.52106 -13.35763 -13.26980 -12.77326 -12.61855 -12.46920 -12.08362 -11.91249 -11.77240 -11.47947 -10.95322 -10.77278 -10.54136 -10.13124 -10.10669 -9.85385 -9.68873 -9.65554 -9.16088 -9.03240 -8.57792 -7.40803 -5.86421 -3.24418 0.87999 1.08692 2.60447 2.97733 3.32108 3.35208 3.40751 3.64373 4.19040 4.43948 4.50853 4.54051 4.57094 4.74266 4.77919 4.84711 5.06520 5.12314 5.17075 5.20171 5.34162 5.42068 5.47453 5.54281 5.59015 5.80214 5.81625 5.87276 6.00972 6.05718 6.20309 6.37018 6.46702 6.48546 6.73114 7.55646 7.77179 7.87089 8.15203 8.31838 9.08330 9.80729 9.98643 11.31236 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042041 B = 0.003220 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.856609 B = 8692.216671 C = 8896.118433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.099 3.901 14 N -0.614 5.614 15 C 0.527 3.473 16 O -0.539 6.539 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.172 4.172 21 C 0.094 3.906 22 N -0.485 5.485 23 C 0.114 3.886 24 C 0.097 3.903 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.757 -12.096 -4.128 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.024 4.024 14 N -0.348 5.348 15 C 0.315 3.685 16 O -0.416 6.416 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.192 4.192 21 C -0.063 4.063 22 N -0.193 5.193 23 C -0.043 4.043 24 C -0.027 4.027 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.097 0.903 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.798 -12.550 -2.879 24.461 hybrid contribution 0.512 1.972 -0.850 2.208 sum 21.310 -10.579 -3.729 24.082 Atomic orbital electron populations 1.69689 1.05127 1.26048 1.56788 1.24671 0.95230 0.97278 1.01555 0.86573 0.79320 0.84934 0.77846 1.20971 1.21579 1.20211 1.19019 0.80129 0.94860 1.43932 0.88985 1.42607 1.04165 1.01474 1.89860 1.21268 0.88978 0.89904 0.93320 0.91021 1.23376 0.95041 0.99558 1.01526 1.22157 0.94112 0.98910 0.87236 1.48457 1.22176 1.34981 1.29196 1.20070 0.79751 0.83989 0.84694 1.90734 1.63058 1.61598 1.26177 1.20574 0.94695 0.98205 0.99962 1.20330 0.94707 0.98185 0.98450 1.21447 0.91963 0.96980 0.98448 1.22103 0.99440 0.99569 0.98085 1.22753 0.95796 0.93086 0.94680 1.67686 0.98926 1.26131 1.26534 1.22611 0.96647 0.94075 0.91008 1.22541 0.92284 0.88826 0.99012 0.92877 0.80319 0.90582 0.90131 0.91488 0.91830 0.87504 0.87777 0.85021 0.84802 0.82867 0.82948 0.90337 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.44 27.74 -169.99 -4.71 16.73 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.49 5.08 -51.35 -0.26 -16.75 16 10 C 0.18 3.13 3.69 -65.78 -0.24 2.89 16 11 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 12 C -0.15 -2.23 6.65 -24.89 -0.17 -2.40 16 13 C 0.10 1.10 6.49 -3.06 -0.02 1.08 16 14 N -0.61 -8.34 3.33 -170.52 -0.57 -8.90 16 15 C 0.53 7.19 7.84 -10.99 -0.09 7.11 16 16 O -0.54 -9.61 16.29 5.56 0.09 -9.52 16 17 C -0.09 -0.86 5.05 -29.03 -0.15 -1.01 16 18 C -0.11 -1.21 4.39 -104.48 -0.46 -1.67 16 19 C -0.06 -0.60 9.86 -39.27 -0.39 -0.99 16 20 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 21 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 22 N -0.48 -5.88 10.36 -13.25 -0.14 -6.02 16 23 C 0.11 1.29 10.86 -17.55 -0.19 1.10 16 24 C 0.10 1.56 6.53 -2.53 -0.02 1.54 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.36 8.04 5.57 -40.82 -0.23 7.81 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.08 1.35 8.04 -51.93 -0.42 0.94 16 38 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -33.89 323.20 -7.80 -41.69 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.30 Total: 5.74 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.56 Total: -0.24 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.19 Total: -59.27 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.89 -7.80 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018716046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.185 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds