Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48506 * 109.46830 * 269.99747 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99344 * 3 2 1 6 6 H 1.48492 * 109.47479 * 149.99501 * 3 2 1 7 7 C 1.38812 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00155 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00432 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00276 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.92089 * 322.55367 * 10 9 7 12 12 C 1.55165 * 111.00397 * 86.45348 * 10 9 7 13 13 C 1.54327 * 102.94078 * 153.57581 * 12 10 9 14 14 N 1.47022 * 107.27336 * 337.80587 * 13 12 10 15 15 C 1.34776 * 125.64758 * 178.97550 * 14 13 12 16 16 O 1.21278 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99804 * 359.97438 * 15 14 13 18 18 C 1.50703 * 109.46792 * 180.02562 * 17 15 14 19 19 C 1.38678 * 120.41501 * 269.71761 * 18 17 15 20 20 C 1.38632 * 118.41515 * 179.78163 * 19 18 17 21 21 C 1.38222 * 119.16161 * 0.47676 * 20 19 18 22 22 N 1.31851 * 120.76602 * 359.76859 * 21 20 19 23 23 C 1.31882 * 121.72476 * 359.97438 * 22 21 20 24 24 C 1.47425 * 108.70334 * 358.94217 * 14 13 12 25 25 H 0.97003 * 120.00673 * 0.02562 * 1 2 3 26 26 H 0.97006 * 120.00062 * 0.02562 * 9 7 2 27 27 H 1.08993 * 110.71917 * 35.21311 * 12 10 9 28 28 H 1.09002 * 110.71751 * 271.93883 * 12 10 9 29 29 H 1.08997 * 109.87800 * 97.22770 * 13 12 10 30 30 H 1.08998 * 109.87662 * 218.38556 * 13 12 10 31 31 H 1.09002 * 109.47258 * 299.99966 * 17 15 14 32 32 H 1.08999 * 109.47362 * 60.00045 * 17 15 14 33 33 H 1.07999 * 120.79000 * 0.02927 * 19 18 17 34 34 H 1.08001 * 120.41528 * 180.26828 * 20 19 18 35 35 H 1.08002 * 119.61547 * 179.74787 * 21 20 19 36 36 H 1.08005 * 119.61771 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.36855 * 142.96531 * 24 14 13 38 38 H 1.08997 * 110.36655 * 265.29403 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.6064 -3.2117 0.6216 12 6 4.3131 -2.9983 -1.4431 13 6 5.5908 -3.8554 -1.3236 14 7 6.3226 -3.3853 -0.1383 15 6 7.4839 -3.8929 0.3204 16 8 8.0008 -3.4240 1.3122 17 6 8.1398 -5.0431 -0.3993 18 6 9.4147 -5.4186 0.3113 19 6 10.6169 -4.8251 -0.0430 20 6 11.7636 -5.1981 0.6410 21 6 11.6727 -6.1496 1.6395 22 7 10.5130 -6.6967 1.9463 23 6 9.4013 -6.3625 1.3203 24 6 5.5762 -2.2663 0.4651 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 4.4665 -2.1721 -2.1373 28 1 3.4655 -3.6103 -1.7517 29 1 5.3230 -4.9049 -1.2019 30 1 6.2067 -3.7287 -2.2140 31 1 7.4642 -5.8984 -0.4090 32 1 8.3676 -4.7483 -1.4236 33 1 10.6582 -4.0870 -0.8303 34 1 12.7164 -4.7533 0.3945 35 1 12.5621 -6.4486 2.1743 36 1 8.4698 -6.8327 1.5990 37 1 5.6400 -2.3101 1.5523 38 1 5.9599 -1.3137 0.0998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018716046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = -4.036024 kcal Electronic energy + Delta-G solvation = -20362.242576 eV Core-core repulsion = 17204.053449 eV Total energy + Delta-G solvation = -3158.189127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48287 -40.62231 -38.72632 -36.03522 -34.56819 -33.54392 -32.81388 -31.35876 -30.01365 -28.46415 -25.41167 -24.50129 -24.20577 -23.08800 -21.72749 -20.24694 -19.72150 -18.18254 -17.99096 -17.66141 -17.26295 -16.58489 -16.33843 -15.76022 -15.63008 -15.34738 -14.71793 -14.64257 -14.44975 -14.26510 -13.94316 -13.71946 -13.59751 -13.43980 -13.18248 -13.04738 -12.66414 -12.46869 -12.25455 -12.18610 -11.82322 -11.59731 -11.10702 -10.99149 -10.68145 -10.40181 -9.90401 -9.68173 -9.35445 -8.03441 -5.38427 0.15650 0.37378 1.38835 1.40949 1.47977 1.59596 1.94169 2.47459 2.88806 3.26246 3.50066 3.52549 3.59301 3.75159 3.86463 3.93150 4.07177 4.10103 4.12839 4.21276 4.35159 4.45300 4.50026 4.56454 4.69336 4.76963 4.85615 4.89832 4.99086 5.18399 5.20139 5.27326 5.31745 5.41598 5.75661 5.80102 6.19903 6.53069 7.03937 7.04551 7.11785 7.79181 7.97421 9.17487 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042041 B = 0.003220 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.856609 B = 8692.216671 C = 8896.118433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.256 1.256 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.745 5.745 10 C 0.166 3.834 11 H 0.059 0.941 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.613 5.613 15 C 0.525 3.475 16 O -0.588 6.588 17 C -0.082 4.082 18 C -0.126 4.126 19 C -0.073 4.073 20 C -0.171 4.171 21 C 0.079 3.921 22 N -0.517 5.517 23 C 0.092 3.908 24 C 0.105 3.895 25 H 0.258 0.742 26 H 0.366 0.634 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.060 0.940 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.432 -12.557 -5.829 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.388 5.388 10 C 0.057 3.943 11 H 0.077 0.923 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.347 5.347 15 C 0.316 3.684 16 O -0.468 6.468 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.191 4.191 21 C -0.077 4.077 22 N -0.225 5.225 23 C -0.065 4.065 24 C -0.019 4.019 25 H 0.067 0.933 26 H 0.200 0.800 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.078 0.922 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.524 -13.068 -4.611 27.302 hybrid contribution -0.278 2.004 -0.282 2.042 sum 23.245 -11.064 -4.893 26.205 Atomic orbital electron populations 1.69862 1.07066 1.26702 1.59502 1.25447 0.96027 1.01092 1.02613 0.85476 0.78544 0.79969 0.78181 1.20112 1.22544 1.18033 1.18975 0.82099 0.93592 1.41306 0.91904 1.42576 1.02657 1.03387 1.90132 1.21435 0.89372 0.87838 0.95700 0.92292 1.23197 0.97215 0.99956 0.98311 1.22289 0.92460 0.99424 0.87441 1.48520 1.22280 1.34215 1.29676 1.20885 0.79117 0.84332 0.84113 1.90718 1.64298 1.63292 1.28504 1.20625 0.94102 0.96946 1.00501 1.20513 0.95740 0.98103 0.98478 1.21837 0.91963 0.97115 0.98979 1.22460 1.00620 0.98811 0.97189 1.23237 0.95933 0.93290 0.95248 1.67664 0.99893 1.27401 1.27584 1.22848 0.96894 0.95026 0.91715 1.22219 0.91453 0.90126 0.98108 0.93299 0.80032 0.91039 0.90134 0.88609 0.88272 0.84866 0.84507 0.83012 0.81936 0.80693 0.82416 0.92194 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.55 13.97 21.65 0.30 -61.25 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 44.47 27.74 68.60 1.90 46.37 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.26 -10.92 6.52 99.48 0.65 -10.27 16 7 C -0.23 -12.47 10.47 84.03 0.88 -11.59 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.74 -32.89 5.08 -316.36 -1.61 -34.49 16 10 C 0.17 5.76 3.69 46.39 0.17 5.93 16 11 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 12 C -0.15 -3.90 6.65 31.79 0.21 -3.69 16 13 C 0.11 1.89 6.49 86.73 0.56 2.45 16 14 N -0.61 -14.96 3.33 -811.79 -2.70 -17.66 16 15 C 0.52 13.00 7.84 87.66 0.69 13.69 16 16 O -0.59 -20.42 16.29 -3.02 -0.05 -20.46 16 17 C -0.08 -1.19 5.05 29.10 0.15 -1.04 16 18 C -0.13 -2.37 4.39 -19.77 -0.09 -2.45 16 19 C -0.07 -1.21 9.86 22.47 0.22 -0.99 16 20 C -0.17 -2.61 10.11 22.36 0.23 -2.39 16 21 C 0.08 1.45 11.18 84.69 0.95 2.40 16 22 N -0.52 -12.19 10.36 -195.85 -2.03 -14.22 16 23 C 0.09 1.99 10.86 84.67 0.92 2.91 16 24 C 0.11 3.28 6.53 86.86 0.57 3.85 16 25 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.37 15.72 5.57 -92.70 -0.52 15.20 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 1.25 8.09 -2.39 -0.02 1.23 16 32 H 0.14 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.06 2.07 8.04 -2.39 -0.02 2.06 16 38 H 0.06 2.03 8.00 -2.39 -0.02 2.02 16 Total: -1.00 -76.52 323.20 2.22 -74.30 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.48 Total: 21.32 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.92 Total: 6.10 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.03 Total: -127.63 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Total: -76.52 2.22 -74.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018716046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.266 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds