Wall clock time and date at job start Mon Mar 30 2020 02:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99558 * 2 1 4 4 H 1.48506 * 109.46805 * 240.00049 * 3 2 1 5 5 H 1.48501 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47282 * 120.00140 * 3 2 1 7 7 C 1.38809 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99709 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.91710 * 37.45245 * 10 9 7 12 12 C 1.55156 * 111.00541 * 161.35444 * 10 9 7 13 13 C 1.54331 * 103.02179 * 153.38144 * 12 10 9 14 14 N 1.47024 * 107.26614 * 338.13854 * 13 12 10 15 15 C 1.34777 * 125.64779 * 178.84768 * 14 13 12 16 16 O 1.21776 * 119.99777 * 179.69231 * 15 14 13 17 17 C 1.41515 * 119.99963 * 359.69764 * 15 14 13 18 18 C 1.35615 * 120.00006 * 179.97438 * 17 15 14 19 19 C 1.41675 * 120.00094 * 179.97438 * 18 17 15 20 20 C 1.38286 * 126.26132 * 180.02562 * 19 18 17 21 21 C 1.39782 * 107.07577 * 179.97438 * 20 19 18 22 22 C 1.35502 * 107.91791 * 359.97438 * 21 20 19 23 23 N 1.35759 * 108.90533 * 359.76934 * 22 21 20 24 24 H 0.97002 * 125.69160 * 180.23816 * 23 22 21 25 25 C 1.47424 * 108.70266 * 358.58811 * 14 13 12 26 26 H 0.96996 * 120.00193 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00012 * 0.02562 * 9 7 2 28 28 H 1.09001 * 110.71696 * 271.94251 * 12 10 9 29 29 H 1.08996 * 110.71646 * 35.21057 * 12 10 9 30 30 H 1.09008 * 109.98875 * 218.66601 * 13 12 10 31 31 H 1.08994 * 109.77969 * 97.49906 * 13 12 10 32 32 H 1.07999 * 119.99995 * 359.97438 * 17 15 14 33 33 H 1.07999 * 119.99999 * 359.97438 * 18 17 15 34 34 H 1.07995 * 126.45492 * 359.93587 * 20 19 18 35 35 H 1.08002 * 126.03861 * 179.97438 * 21 20 19 36 36 H 1.07997 * 125.54796 * 180.02562 * 22 21 20 37 37 H 1.08994 * 110.36436 * 143.18919 * 25 14 13 38 38 H 1.08996 * 110.36793 * 265.40546 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0583 -3.6567 0.0027 11 1 2.9528 -3.5889 0.6218 12 6 1.1479 -4.8242 0.4669 13 6 1.7803 -6.0527 -0.2206 14 7 2.5596 -5.5591 -1.3654 15 6 3.2832 -6.3205 -2.2099 16 8 3.8874 -5.8021 -3.1314 17 6 3.3406 -7.7225 -2.0259 18 6 4.0682 -8.4887 -2.8760 19 6 4.1262 -9.8922 -2.6915 20 6 4.8245 -10.7921 -3.4755 21 6 4.6051 -12.0629 -2.9363 22 6 3.7968 -11.9242 -1.8577 23 7 3.5028 -10.6089 -1.6946 24 1 2.9446 -10.2365 -0.9942 25 6 2.4135 -4.0941 -1.4403 26 1 -0.4850 0.8400 0.0004 27 1 0.3558 -2.3881 0.0016 28 1 1.1775 -4.9285 1.5515 29 1 0.1251 -4.6768 0.1203 30 1 0.9988 -6.7287 -0.5680 31 1 2.4365 -6.5700 0.4792 32 1 2.8050 -8.1822 -1.2085 33 1 4.6035 -8.0290 -3.6936 34 1 5.4255 -10.5573 -4.3415 35 1 5.0085 -12.9913 -3.3129 36 1 3.4471 -12.7286 -1.2275 37 1 3.3504 -3.6351 -1.7560 38 1 1.6107 -3.8275 -2.1277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018766756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:57 Heat of formation + Delta-G solvation = 45.462068 kcal Electronic energy + Delta-G solvation = -20038.211369 eV Core-core repulsion = 16882.168640 eV Total energy + Delta-G solvation = -3156.042729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39453 -39.81092 -37.38306 -34.13589 -33.91813 -31.58051 -31.37608 -29.66172 -28.95178 -27.35499 -24.64108 -23.21256 -22.32111 -20.92509 -20.53699 -20.06601 -18.70067 -17.92477 -17.31926 -16.65591 -15.94624 -15.30386 -14.66941 -14.49218 -14.19586 -14.15325 -13.89820 -13.44585 -13.15897 -13.01061 -12.67627 -12.59825 -12.31013 -12.22312 -12.11215 -11.49890 -11.08704 -10.84240 -10.72196 -10.47090 -10.33558 -10.06258 -9.80473 -9.70554 -9.29001 -9.00930 -8.35582 -7.87476 -7.08260 -5.83978 -3.14814 0.52869 2.26530 2.78533 2.90131 3.33714 3.42742 3.47016 3.48365 3.60140 4.53766 4.65642 4.72312 4.85916 4.93295 5.03912 5.11383 5.17457 5.21550 5.37873 5.49362 5.66146 5.68012 5.75842 5.82892 5.93149 6.04761 6.10078 6.13832 6.24927 6.37883 6.55938 6.60092 6.66754 6.71622 6.89592 7.14461 7.65496 7.83317 8.33543 8.42684 9.45632 9.98513 10.33528 11.38047 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046492 B = 0.002912 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.112781 B = 9614.238767 C =10036.909513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.140 4.140 13 C 0.106 3.894 14 N -0.612 5.612 15 C 0.560 3.440 16 O -0.555 6.555 17 C -0.232 4.232 18 C 0.018 3.982 19 C 0.009 3.991 20 C -0.146 4.146 21 C -0.208 4.208 22 C 0.011 3.989 23 N -0.545 5.545 24 H 0.417 0.583 25 C 0.082 3.918 26 H 0.257 0.743 27 H 0.387 0.613 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.168 0.832 37 H 0.071 0.929 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -24.484 -0.946 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.179 4.179 13 C -0.018 4.018 14 N -0.345 5.345 15 C 0.353 3.647 16 O -0.436 6.436 17 C -0.254 4.254 18 C -0.003 4.003 19 C -0.101 4.101 20 C -0.171 4.171 21 C -0.232 4.232 22 C -0.124 4.124 23 N -0.139 5.139 24 H 0.254 0.746 25 C -0.043 4.043 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.089 0.911 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.312 -23.981 -1.325 24.598 hybrid contribution -0.266 0.957 0.395 1.069 sum 5.046 -23.024 -0.930 23.589 Atomic orbital electron populations 1.69650 1.05162 1.26045 1.57011 1.24771 0.95544 0.97859 1.02360 0.86236 0.78554 0.83217 0.77994 1.21063 1.21626 1.21137 1.19216 0.91125 0.83903 1.43665 0.90979 1.42291 1.05769 0.99390 1.87781 1.21309 0.94555 0.86070 0.92099 0.91832 1.22902 1.00365 0.94265 1.00377 1.21988 0.94439 0.97497 0.87866 1.48475 1.47901 1.09318 1.28795 1.16581 0.79302 0.86998 0.81843 1.90826 1.45739 1.75244 1.31832 1.21810 1.06167 0.94319 1.03123 1.20845 0.93281 0.89161 0.97030 1.18328 1.04836 0.92089 0.94827 1.21537 1.02369 0.92233 1.00965 1.20887 1.04958 0.98254 0.99119 1.22055 1.03326 0.85429 1.01611 1.42213 1.39959 1.07121 1.24617 0.74558 1.23382 1.01939 0.77284 1.01728 0.93298 0.77859 0.90182 0.90432 0.92030 0.91931 0.86878 0.83208 0.83783 0.84233 0.81503 0.91058 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.79 9.98 -15.06 -0.15 -6.94 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.35 5.28 -51.35 -0.27 -17.62 16 10 C 0.17 3.33 3.69 -65.78 -0.24 3.09 16 11 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 12 C -0.14 -2.07 6.57 -24.89 -0.16 -2.24 16 13 C 0.11 1.34 5.98 -3.06 -0.02 1.32 16 14 N -0.61 -9.98 3.33 -173.95 -0.58 -10.56 16 15 C 0.56 9.32 7.61 -15.01 -0.11 9.21 16 16 O -0.56 -11.33 16.36 5.12 0.08 -11.24 16 17 C -0.23 -2.84 8.97 -39.27 -0.35 -3.19 16 18 C 0.02 0.20 9.40 -39.21 -0.37 -0.17 16 19 C 0.01 0.09 6.74 -83.90 -0.57 -0.47 16 20 C -0.15 -1.35 10.86 -38.99 -0.42 -1.77 16 21 C -0.21 -1.64 10.81 -39.98 -0.43 -2.07 16 22 C 0.01 0.07 11.90 -16.79 -0.20 -0.13 16 23 N -0.54 -4.14 5.94 -10.56 -0.06 -4.21 16 24 H 0.42 2.25 7.87 -40.82 -0.32 1.93 16 25 C 0.08 1.59 6.60 -2.53 -0.02 1.58 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 9.90 7.71 -40.82 -0.31 9.59 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.11 1.05 6.13 -52.49 -0.32 0.73 16 33 H 0.15 1.78 7.46 -52.49 -0.39 1.39 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -33.49 325.65 -8.47 -41.96 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.11 Total: 8.56 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.14 Total: -2.14 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.19 Total: -59.31 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.49 -8.47 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018766756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.426 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds