Wall clock time and date at job start Mon Mar 30 2020 02:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99558 * 2 1 4 4 H 1.48506 * 109.46805 * 240.00049 * 3 2 1 5 5 H 1.48501 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47282 * 120.00140 * 3 2 1 7 7 C 1.38809 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99709 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.91710 * 37.45245 * 10 9 7 12 12 C 1.55156 * 111.00541 * 161.35444 * 10 9 7 13 13 C 1.54331 * 103.02179 * 153.38144 * 12 10 9 14 14 N 1.47024 * 107.26614 * 338.13854 * 13 12 10 15 15 C 1.34777 * 125.64779 * 178.84768 * 14 13 12 16 16 O 1.21776 * 119.99777 * 179.69231 * 15 14 13 17 17 C 1.41515 * 119.99963 * 359.69764 * 15 14 13 18 18 C 1.35615 * 120.00006 * 179.97438 * 17 15 14 19 19 C 1.41675 * 120.00094 * 179.97438 * 18 17 15 20 20 C 1.38286 * 126.26132 * 180.02562 * 19 18 17 21 21 C 1.39782 * 107.07577 * 179.97438 * 20 19 18 22 22 C 1.35502 * 107.91791 * 359.97438 * 21 20 19 23 23 N 1.35759 * 108.90533 * 359.76934 * 22 21 20 24 24 H 0.97002 * 125.69160 * 180.23816 * 23 22 21 25 25 C 1.47424 * 108.70266 * 358.58811 * 14 13 12 26 26 H 0.96996 * 120.00193 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00012 * 0.02562 * 9 7 2 28 28 H 1.09001 * 110.71696 * 271.94251 * 12 10 9 29 29 H 1.08996 * 110.71646 * 35.21057 * 12 10 9 30 30 H 1.09008 * 109.98875 * 218.66601 * 13 12 10 31 31 H 1.08994 * 109.77969 * 97.49906 * 13 12 10 32 32 H 1.07999 * 119.99995 * 359.97438 * 17 15 14 33 33 H 1.07999 * 119.99999 * 359.97438 * 18 17 15 34 34 H 1.07995 * 126.45492 * 359.93587 * 20 19 18 35 35 H 1.08002 * 126.03861 * 179.97438 * 21 20 19 36 36 H 1.07997 * 125.54796 * 180.02562 * 22 21 20 37 37 H 1.08994 * 110.36436 * 143.18919 * 25 14 13 38 38 H 1.08996 * 110.36793 * 265.40546 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0583 -3.6567 0.0027 11 1 2.9528 -3.5889 0.6218 12 6 1.1479 -4.8242 0.4669 13 6 1.7803 -6.0527 -0.2206 14 7 2.5596 -5.5591 -1.3654 15 6 3.2832 -6.3205 -2.2099 16 8 3.8874 -5.8021 -3.1314 17 6 3.3406 -7.7225 -2.0259 18 6 4.0682 -8.4887 -2.8760 19 6 4.1262 -9.8922 -2.6915 20 6 4.8245 -10.7921 -3.4755 21 6 4.6051 -12.0629 -2.9363 22 6 3.7968 -11.9242 -1.8577 23 7 3.5028 -10.6089 -1.6946 24 1 2.9446 -10.2365 -0.9942 25 6 2.4135 -4.0941 -1.4403 26 1 -0.4850 0.8400 0.0004 27 1 0.3558 -2.3881 0.0016 28 1 1.1775 -4.9285 1.5515 29 1 0.1251 -4.6768 0.1203 30 1 0.9988 -6.7287 -0.5680 31 1 2.4365 -6.5700 0.4792 32 1 2.8050 -8.1822 -1.2085 33 1 4.6035 -8.0290 -3.6936 34 1 5.4255 -10.5573 -4.3415 35 1 5.0085 -12.9913 -3.3129 36 1 3.4471 -12.7286 -1.2275 37 1 3.3504 -3.6351 -1.7560 38 1 1.6107 -3.8275 -2.1277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018766756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:56 Heat of formation + Delta-G solvation = 22.632845 kcal Electronic energy + Delta-G solvation = -20039.201319 eV Core-core repulsion = 16882.168640 eV Total energy + Delta-G solvation = -3157.032678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03287 -41.08735 -38.78913 -35.95379 -34.85666 -33.35636 -31.99030 -31.18163 -29.98189 -28.66285 -26.19014 -24.70085 -23.40645 -21.77888 -21.49595 -21.16269 -19.87874 -19.20830 -18.79386 -17.73494 -17.39645 -16.57263 -16.33651 -15.62359 -15.31295 -15.13005 -14.95786 -14.77332 -14.53232 -14.30526 -13.91401 -13.78559 -13.30096 -13.23149 -13.07598 -12.92467 -12.87559 -12.53995 -12.37891 -12.11086 -11.79145 -11.63536 -11.32057 -11.11984 -10.97882 -9.89051 -9.68773 -9.10352 -8.60188 -7.99533 -5.29706 -0.34990 1.45898 1.48729 1.54557 1.56031 2.03244 2.07328 2.35903 2.53212 2.54827 3.31494 3.63830 3.65621 3.96338 3.99004 4.08936 4.25510 4.34935 4.38234 4.43658 4.45243 4.51943 4.55229 4.69505 4.83904 4.95199 4.99862 5.03690 5.17846 5.27642 5.34041 5.36293 5.44131 5.51787 5.94633 6.07102 6.22427 6.59360 6.65183 7.15797 7.29569 8.00795 8.25370 9.22931 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046492 B = 0.002912 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.112781 B = 9614.238767 C =10036.909513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.723 5.723 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.128 4.128 13 C 0.108 3.892 14 N -0.614 5.614 15 C 0.554 3.446 16 O -0.610 6.610 17 C -0.253 4.253 18 C 0.041 3.959 19 C -0.024 4.024 20 C -0.150 4.150 21 C -0.229 4.229 22 C 0.035 3.965 23 N -0.538 5.538 24 H 0.429 0.571 25 C 0.092 3.908 26 H 0.253 0.747 27 H 0.378 0.622 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.206 0.794 37 H 0.040 0.960 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -27.763 0.470 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.090 0.910 9 N -0.363 5.363 10 C 0.055 3.945 11 H 0.079 0.921 12 C -0.167 4.167 13 C -0.014 4.014 14 N -0.346 5.346 15 C 0.350 3.650 16 O -0.495 6.495 17 C -0.274 4.274 18 C 0.020 3.980 19 C -0.134 4.134 20 C -0.176 4.176 21 C -0.253 4.253 22 C -0.102 4.102 23 N -0.133 5.133 24 H 0.268 0.732 25 C -0.034 4.034 26 H 0.062 0.938 27 H 0.211 0.789 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.223 0.777 37 H 0.059 0.941 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.519 -27.299 0.127 27.852 hybrid contribution -0.235 1.722 -0.118 1.742 sum 5.284 -25.577 0.009 26.117 Atomic orbital electron populations 1.69789 1.06443 1.26343 1.58857 1.25537 0.96402 1.01002 1.03195 0.85256 0.77311 0.79316 0.78145 1.20938 1.21854 1.20058 1.19554 0.91381 0.85261 1.41984 0.90958 1.42414 1.05513 1.00435 1.87911 1.21464 0.95311 0.85868 0.91902 0.92079 1.22846 0.99104 0.92721 1.02002 1.22239 0.95398 0.96827 0.86950 1.48506 1.48478 1.07632 1.30032 1.17294 0.78216 0.88639 0.80845 1.90791 1.48126 1.76453 1.34159 1.21613 1.08838 0.91496 1.05485 1.20813 0.91367 0.90158 0.95619 1.18157 1.07113 0.91374 0.96724 1.21879 1.01662 0.93116 1.00896 1.21238 1.05843 0.98349 0.99851 1.22749 1.00966 0.85704 1.00755 1.42262 1.39529 1.07300 1.24225 0.73162 1.22925 0.99438 0.79961 1.01103 0.93804 0.78858 0.87845 0.90804 0.88947 0.88550 0.83402 0.84864 0.83382 0.82518 0.77694 0.94086 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.48 13.06 21.65 0.28 -58.19 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.95 9.98 84.03 0.84 -13.11 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -36.00 5.28 -316.38 -1.67 -37.67 16 10 C 0.17 6.43 3.69 46.39 0.17 6.60 16 11 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 12 C -0.13 -3.53 6.57 31.78 0.21 -3.32 16 13 C 0.11 2.39 5.98 86.73 0.52 2.91 16 14 N -0.61 -19.78 3.33 -822.44 -2.74 -22.52 16 15 C 0.55 18.57 7.61 85.05 0.65 19.21 16 16 O -0.61 -26.15 16.36 -4.59 -0.08 -26.22 16 17 C -0.25 -5.82 8.97 22.47 0.20 -5.61 16 18 C 0.04 0.91 9.40 22.51 0.21 1.12 16 19 C -0.02 -0.42 6.74 39.08 0.26 -0.16 16 20 C -0.15 -2.49 10.86 22.65 0.25 -2.24 16 21 C -0.23 -2.87 10.81 22.01 0.24 -2.63 16 22 C 0.03 0.32 11.90 83.45 0.99 1.31 16 23 N -0.54 -6.19 5.94 -187.32 -1.11 -7.30 16 24 H 0.43 2.77 7.87 -92.71 -0.73 2.04 16 25 C 0.09 3.73 6.60 86.86 0.57 4.30 16 26 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.38 19.86 7.71 -92.71 -0.71 19.14 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.15 2.22 6.13 -2.91 -0.02 2.20 16 33 H 0.13 3.31 7.46 -2.91 -0.02 3.29 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -76.10 325.65 1.93 -74.17 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.36 Total: 24.30 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.58 Total: 4.90 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.23 Total: -125.68 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.08 Total: -26.22 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.10 1.93 -74.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018766756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.802 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds