Wall clock time and date at job start Mon Mar 30 2020 01:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46990 * 274.11270 * 3 2 1 5 5 H 1.48503 * 109.47225 * 34.11571 * 3 2 1 6 6 H 1.48504 * 109.46812 * 154.11788 * 3 2 1 7 7 C 1.38814 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00103 * 342.25517 * 7 2 1 9 9 N 1.36930 * 119.99485 * 162.26122 * 7 2 1 10 10 C 1.47429 * 125.64903 * 324.01036 * 9 7 2 11 11 C 1.54910 * 104.83079 * 155.89918 * 10 9 7 12 12 C 1.55151 * 101.58541 * 37.00685 * 11 10 9 13 13 C 1.47022 * 125.64926 * 144.04083 * 9 7 2 14 14 H 1.08999 * 110.01478 * 300.52339 * 13 9 7 15 15 C 1.53004 * 109.88261 * 61.61865 * 13 9 7 16 16 N 1.46506 * 109.46718 * 295.60820 * 15 13 9 17 17 C 1.34778 * 119.99798 * 174.10094 * 16 15 13 18 18 O 1.21552 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.47835 * 120.00065 * 180.02562 * 17 16 15 20 20 C 1.40023 * 120.56087 * 179.97438 * 19 17 16 21 21 C 1.38352 * 118.28992 * 180.22743 * 20 19 17 22 22 C 1.38362 * 119.30194 * 359.50816 * 21 20 19 23 23 N 1.31924 * 121.07705 * 0.51174 * 22 21 20 24 24 C 1.31694 * 121.87876 * 359.73667 * 23 22 21 25 25 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.36518 * 37.06185 * 10 9 7 27 27 H 1.09004 * 110.45855 * 274.78271 * 10 9 7 28 28 H 1.09008 * 111.00249 * 278.93292 * 11 10 9 29 29 H 1.09003 * 111.00507 * 155.08478 * 11 10 9 30 30 H 1.09002 * 110.72633 * 206.13235 * 12 11 10 31 31 H 1.09005 * 110.71662 * 82.86337 * 12 11 10 32 32 H 1.09004 * 109.47261 * 175.61366 * 15 13 9 33 33 H 1.08997 * 109.47140 * 55.60754 * 15 13 9 34 34 H 0.96995 * 120.00359 * 354.10504 * 16 15 13 35 35 H 1.08004 * 120.85735 * 359.96223 * 20 19 17 36 36 H 1.08000 * 120.35230 * 179.74850 * 21 20 19 37 37 H 1.08003 * 119.45610 * 180.22687 * 22 21 20 38 38 H 1.08003 * 119.71179 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4938 2.6260 0.7853 6 1 3.5885 1.4166 0.6112 7 6 2.0103 -1.2022 -0.0005 8 1 1.5088 -2.1154 0.2841 9 7 3.3307 -1.2301 -0.3619 10 6 3.9536 -0.3967 -1.4064 11 6 5.4522 -0.3309 -1.0199 12 6 5.6961 -1.7622 -0.4730 13 6 4.3621 -2.0967 0.2271 14 1 4.4460 -1.9030 1.2965 15 6 4.0046 -3.5655 -0.0089 16 7 2.7649 -3.8867 0.7026 17 6 2.1906 -5.0956 0.5437 18 8 2.7015 -5.9195 -0.1895 19 6 0.9392 -5.4196 1.2612 20 6 0.3323 -6.6716 1.1043 21 6 -0.8402 -6.9230 1.7944 22 6 -1.3650 -5.9425 2.6175 23 7 -0.7712 -4.7715 2.7459 24 6 0.3433 -4.4830 2.1063 25 1 -0.4850 0.8400 0.0004 26 1 3.5172 0.6021 -1.4050 27 1 3.8343 -0.8608 -2.3855 28 1 5.6237 0.4175 -0.2461 29 1 6.0731 -0.1357 -1.8943 30 1 6.5188 -1.7669 0.2421 31 1 5.8889 -2.4591 -1.2887 32 1 4.8104 -4.1996 0.3609 33 1 3.8664 -3.7389 -1.0761 34 1 2.3573 -3.2294 1.2879 35 1 0.7660 -7.4203 0.4579 36 1 -1.3385 -7.8760 1.6946 37 1 -2.2782 -6.1374 3.1602 38 1 0.8001 -3.5131 2.2375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027708319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:37 Heat of formation + Delta-G solvation = 31.655803 kcal Electronic energy + Delta-G solvation = -21382.666874 eV Core-core repulsion = 18226.025461 eV Total energy + Delta-G solvation = -3156.641413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32398 -38.83888 -37.78421 -34.17949 -32.71075 -32.35383 -31.48160 -30.02278 -29.24118 -25.40265 -24.37468 -23.49337 -22.99503 -21.00833 -20.08253 -19.66137 -17.99475 -16.83722 -16.50809 -16.26914 -16.03044 -14.96891 -14.90664 -14.63036 -14.43313 -13.78336 -13.43531 -13.23691 -13.01418 -12.96163 -12.53142 -12.34294 -12.08135 -11.99216 -11.38444 -11.31454 -10.96616 -10.76807 -10.52286 -10.23295 -9.92219 -9.82896 -9.80659 -9.59369 -9.20992 -9.09679 -8.64854 -8.44079 -6.90001 -6.06982 -3.52773 0.82596 1.33170 3.18889 3.27135 3.41273 3.45963 3.60600 4.07003 4.44151 4.49267 4.85997 4.87232 5.00081 5.03324 5.09513 5.18120 5.29867 5.40625 5.48282 5.50380 5.69881 5.82198 5.90190 6.04063 6.07858 6.10364 6.19892 6.22668 6.30539 6.35927 6.55143 6.66861 6.80323 6.81986 6.94794 7.80399 7.97386 8.02567 8.23342 8.60203 8.72544 9.56738 10.15984 11.06777 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.006196 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.093622 B = 4517.928204 C = 5748.837870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.049 0.951 15 C 0.116 3.884 16 N -0.699 5.699 17 C 0.558 3.442 18 O -0.555 6.555 19 C -0.181 4.181 20 C -0.022 4.022 21 C -0.187 4.187 22 C 0.115 3.885 23 N -0.484 5.484 24 C 0.147 3.853 25 H 0.265 0.735 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -8.685 3.481 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.165 4.165 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.106 0.894 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.067 0.933 15 C -0.010 4.010 16 N -0.352 5.352 17 C 0.344 3.656 18 O -0.436 6.436 19 C -0.186 4.186 20 C -0.048 4.048 21 C -0.207 4.207 22 C -0.042 4.042 23 N -0.192 5.192 24 C -0.012 4.012 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.363 -8.493 3.553 10.188 hybrid contribution 0.400 0.742 -0.464 0.962 sum 4.764 -7.751 3.089 9.608 Atomic orbital electron populations 1.69813 1.05791 1.26965 1.51177 1.25446 0.95159 0.98023 0.97863 0.86695 0.80103 0.84041 0.76981 1.21564 1.23145 1.19338 1.18603 0.82459 0.93932 1.43952 0.89426 1.44664 1.05188 1.45003 1.37817 1.21892 0.90873 0.95327 0.92600 1.22782 0.97510 0.96757 1.00393 1.22483 0.96431 0.97067 0.99932 1.21293 0.89000 0.89368 0.96866 0.93326 1.21987 0.84707 0.97117 0.97162 1.46139 1.26625 1.14834 1.47585 1.18006 0.83630 0.82454 0.81487 1.90709 1.64757 1.48707 1.39391 1.21097 0.98584 0.96829 1.02127 1.21686 0.93013 0.95339 0.94790 1.22100 0.97431 1.01548 0.99639 1.22993 0.98323 0.88477 0.94409 1.67742 1.08978 1.20002 1.22518 1.23186 0.90237 0.98348 0.89388 0.92486 0.94085 0.95095 0.91576 0.91530 0.91358 0.91231 0.92638 0.91457 0.74827 0.83842 0.84389 0.82536 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.97 55.49 0.78 -25.45 16 2 C 0.04 1.01 5.45 -17.43 -0.10 0.91 16 3 Si 0.89 21.70 24.83 -169.99 -4.22 17.48 16 4 H -0.29 -6.97 6.81 56.52 0.39 -6.59 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.31 7.06 56.52 0.40 -5.91 16 7 C -0.26 -6.75 9.50 -15.06 -0.14 -6.89 16 8 H 0.09 2.31 5.54 -52.49 -0.29 2.02 16 9 N -0.60 -13.33 2.67 -162.57 -0.43 -13.76 16 10 C 0.12 2.42 6.24 -2.53 -0.02 2.40 16 11 C -0.14 -2.20 7.08 -24.58 -0.17 -2.38 16 12 C -0.12 -1.78 6.48 -24.90 -0.16 -1.94 16 13 C 0.14 2.56 3.30 -66.95 -0.22 2.33 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.12 2.05 5.15 -4.04 -0.02 2.03 16 16 N -0.70 -12.88 4.32 -61.25 -0.26 -13.15 16 17 C 0.56 10.50 7.78 -12.33 -0.10 10.40 16 18 O -0.56 -11.64 16.41 5.32 0.09 -11.55 16 19 C -0.18 -3.03 5.89 -104.82 -0.62 -3.65 16 20 C -0.02 -0.31 9.72 -38.87 -0.38 -0.69 16 21 C -0.19 -2.20 10.10 -39.49 -0.40 -2.59 16 22 C 0.11 1.47 11.17 -17.47 -0.20 1.28 16 23 N -0.48 -7.88 10.35 -12.91 -0.13 -8.01 16 24 C 0.15 2.47 10.71 -17.13 -0.18 2.29 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.04 0.92 3.22 -51.93 -0.17 0.76 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.32 8.12 -51.93 -0.42 0.89 16 34 H 0.41 7.64 4.38 -40.82 -0.18 7.47 16 35 H 0.14 1.91 7.74 -52.48 -0.41 1.50 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.16 2.78 6.42 -52.48 -0.34 2.45 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -31.79 308.65 -6.98 -38.77 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.75 Total: 7.51 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.70 Total: 3.51 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.06 Total: -60.37 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.22 Total: 17.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.79 -6.98 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027708319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.430 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds