Wall clock time and date at job start Mon Mar 30 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46990 * 274.11270 * 3 2 1 5 5 H 1.48503 * 109.47225 * 34.11571 * 3 2 1 6 6 H 1.48504 * 109.46812 * 154.11788 * 3 2 1 7 7 C 1.38814 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00103 * 342.25517 * 7 2 1 9 9 N 1.36930 * 119.99485 * 162.26122 * 7 2 1 10 10 C 1.47429 * 125.64903 * 324.01036 * 9 7 2 11 11 C 1.54910 * 104.83079 * 155.89918 * 10 9 7 12 12 C 1.55151 * 101.58541 * 37.00685 * 11 10 9 13 13 C 1.47022 * 125.64926 * 144.04083 * 9 7 2 14 14 H 1.08999 * 110.01478 * 300.52339 * 13 9 7 15 15 C 1.53004 * 109.88261 * 61.61865 * 13 9 7 16 16 N 1.46506 * 109.46718 * 295.60820 * 15 13 9 17 17 C 1.34778 * 119.99798 * 174.10094 * 16 15 13 18 18 O 1.21552 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.47835 * 120.00065 * 180.02562 * 17 16 15 20 20 C 1.40023 * 120.56087 * 179.97438 * 19 17 16 21 21 C 1.38352 * 118.28992 * 180.22743 * 20 19 17 22 22 C 1.38362 * 119.30194 * 359.50816 * 21 20 19 23 23 N 1.31924 * 121.07705 * 0.51174 * 22 21 20 24 24 C 1.31694 * 121.87876 * 359.73667 * 23 22 21 25 25 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.36518 * 37.06185 * 10 9 7 27 27 H 1.09004 * 110.45855 * 274.78271 * 10 9 7 28 28 H 1.09008 * 111.00249 * 278.93292 * 11 10 9 29 29 H 1.09003 * 111.00507 * 155.08478 * 11 10 9 30 30 H 1.09002 * 110.72633 * 206.13235 * 12 11 10 31 31 H 1.09005 * 110.71662 * 82.86337 * 12 11 10 32 32 H 1.09004 * 109.47261 * 175.61366 * 15 13 9 33 33 H 1.08997 * 109.47140 * 55.60754 * 15 13 9 34 34 H 0.96995 * 120.00359 * 354.10504 * 16 15 13 35 35 H 1.08004 * 120.85735 * 359.96223 * 20 19 17 36 36 H 1.08000 * 120.35230 * 179.74850 * 21 20 19 37 37 H 1.08003 * 119.45610 * 180.22687 * 22 21 20 38 38 H 1.08003 * 119.71179 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4938 2.6260 0.7853 6 1 3.5885 1.4166 0.6112 7 6 2.0103 -1.2022 -0.0005 8 1 1.5088 -2.1154 0.2841 9 7 3.3307 -1.2301 -0.3619 10 6 3.9536 -0.3967 -1.4064 11 6 5.4522 -0.3309 -1.0199 12 6 5.6961 -1.7622 -0.4730 13 6 4.3621 -2.0967 0.2271 14 1 4.4460 -1.9030 1.2965 15 6 4.0046 -3.5655 -0.0089 16 7 2.7649 -3.8867 0.7026 17 6 2.1906 -5.0956 0.5437 18 8 2.7015 -5.9195 -0.1895 19 6 0.9392 -5.4196 1.2612 20 6 0.3323 -6.6716 1.1043 21 6 -0.8402 -6.9230 1.7944 22 6 -1.3650 -5.9425 2.6175 23 7 -0.7712 -4.7715 2.7459 24 6 0.3433 -4.4830 2.1063 25 1 -0.4850 0.8400 0.0004 26 1 3.5172 0.6021 -1.4050 27 1 3.8343 -0.8608 -2.3855 28 1 5.6237 0.4175 -0.2461 29 1 6.0731 -0.1357 -1.8943 30 1 6.5188 -1.7669 0.2421 31 1 5.8889 -2.4591 -1.2887 32 1 4.8104 -4.1996 0.3609 33 1 3.8664 -3.7389 -1.0761 34 1 2.3573 -3.2294 1.2879 35 1 0.7660 -7.4203 0.4579 36 1 -1.3385 -7.8760 1.6946 37 1 -2.2782 -6.1374 3.1602 38 1 0.8001 -3.5131 2.2375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027708319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:36 Heat of formation + Delta-G solvation = 9.655460 kcal Electronic energy + Delta-G solvation = -21383.620881 eV Core-core repulsion = 18226.025461 eV Total energy + Delta-G solvation = -3157.595420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59217 -40.22494 -39.28485 -35.66540 -34.63703 -33.53286 -32.67278 -31.77065 -30.65364 -26.84207 -26.02055 -24.80994 -24.28449 -22.44493 -21.56437 -21.10834 -19.51334 -18.36385 -17.94167 -17.75741 -17.35600 -16.52968 -16.34507 -16.07067 -15.68889 -15.32054 -14.89582 -14.69938 -14.54572 -14.17554 -14.12015 -13.84362 -13.61041 -13.16310 -13.04805 -12.94355 -12.64201 -12.26612 -12.09666 -11.73995 -11.51688 -11.38234 -11.22770 -10.96972 -10.66713 -10.45149 -10.28307 -9.93122 -8.74831 -8.16026 -5.57121 -0.35908 0.21271 1.31137 1.40843 1.51853 1.81996 2.22533 2.44524 2.86051 3.05975 3.33947 3.35860 3.75278 3.83763 3.90505 3.93728 4.00045 4.03749 4.14624 4.32194 4.46848 4.48132 4.64907 4.68425 4.74493 4.85886 4.99681 5.01060 5.01490 5.10828 5.15154 5.31619 5.47274 5.49787 5.60678 5.89073 6.20467 6.49625 6.82902 6.87126 7.13092 7.55903 8.22503 9.01195 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.006196 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.093622 B = 4517.928204 C = 5748.837870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.023 4.023 3 Si 0.948 3.052 4 H -0.288 1.288 5 H -0.315 1.315 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.109 4.109 13 C 0.138 3.862 14 H 0.052 0.948 15 C 0.119 3.881 16 N -0.703 5.703 17 C 0.555 3.445 18 O -0.582 6.582 19 C -0.202 4.202 20 C -0.029 4.029 21 C -0.165 4.165 22 C 0.115 3.885 23 N -0.513 5.513 24 C 0.132 3.868 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.185 0.815 37 H 0.197 0.803 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -9.972 3.817 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.219 4.219 3 Si 0.778 3.222 4 H -0.216 1.216 5 H -0.245 1.245 6 H -0.176 1.176 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.148 4.148 13 C 0.031 3.969 14 H 0.070 0.930 15 C -0.006 4.006 16 N -0.354 5.354 17 C 0.343 3.657 18 O -0.465 6.465 19 C -0.207 4.207 20 C -0.055 4.055 21 C -0.185 4.185 22 C -0.041 4.041 23 N -0.221 5.221 24 C -0.026 4.026 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.249 0.751 35 H 0.170 0.830 36 H 0.203 0.797 37 H 0.214 0.786 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.899 -9.783 3.889 12.068 hybrid contribution -0.112 0.977 -0.569 1.136 sum 5.787 -8.806 3.320 11.048 Atomic orbital electron populations 1.69942 1.07317 1.27158 1.54665 1.26036 0.95668 1.01036 0.99187 0.85768 0.79352 0.80403 0.76633 1.21642 1.24459 1.17644 1.18709 0.84201 0.93196 1.40954 0.91028 1.44838 1.04869 1.45803 1.38867 1.22067 0.93989 0.93764 0.92185 1.22753 0.94244 0.97598 1.01763 1.22519 0.95130 0.96287 1.00824 1.21528 0.89705 0.88324 0.97296 0.92993 1.21984 0.85134 0.97514 0.95959 1.46230 1.26941 1.14796 1.47437 1.18360 0.84125 0.82115 0.81143 1.90673 1.65728 1.49373 1.40718 1.21020 0.98372 0.98289 1.03042 1.21957 0.93921 0.94402 0.95245 1.22559 0.95812 1.02897 0.97194 1.23740 0.98966 0.87317 0.94098 1.67735 1.09014 1.22161 1.23239 1.22959 0.91105 0.98057 0.90471 0.93048 0.96058 0.95397 0.91601 0.88278 0.87961 0.89805 0.90247 0.93512 0.75131 0.83000 0.79725 0.78588 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 13.97 21.65 0.30 -57.45 16 2 C -0.02 -1.27 5.45 84.86 0.46 -0.81 16 3 Si 0.95 45.79 24.83 68.60 1.70 47.50 16 4 H -0.29 -13.77 6.81 99.48 0.68 -13.09 16 5 H -0.32 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.25 -11.32 7.06 99.48 0.70 -10.62 16 7 C -0.24 -12.75 9.50 84.04 0.80 -11.95 16 8 H 0.07 3.96 5.54 -2.91 -0.02 3.95 16 9 N -0.62 -27.15 2.67 -668.24 -1.79 -28.93 16 10 C 0.10 4.15 6.24 86.85 0.54 4.69 16 11 C -0.13 -3.61 7.08 31.98 0.23 -3.38 16 12 C -0.11 -2.81 6.48 31.78 0.21 -2.61 16 13 C 0.14 4.73 3.30 45.34 0.15 4.88 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.12 4.15 5.15 86.38 0.44 4.59 16 16 N -0.70 -26.52 4.32 -465.96 -2.01 -28.53 16 17 C 0.56 21.40 7.78 86.78 0.68 22.08 16 18 O -0.58 -24.70 16.41 -3.88 -0.06 -24.76 16 19 C -0.20 -6.89 5.89 -20.00 -0.12 -7.01 16 20 C -0.03 -0.78 9.72 22.73 0.22 -0.56 16 21 C -0.17 -3.37 10.10 22.33 0.23 -3.14 16 22 C 0.12 2.67 11.17 84.71 0.95 3.62 16 23 N -0.51 -16.62 10.35 -194.75 -2.01 -18.63 16 24 C 0.13 4.62 10.71 85.02 0.91 5.53 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.02 0.94 3.22 -2.39 -0.01 0.94 16 27 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.96 7.85 -2.38 -0.02 1.94 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 34 H 0.41 15.91 4.38 -92.71 -0.41 15.51 16 35 H 0.15 3.84 7.74 -2.91 -0.02 3.81 16 36 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.15 5.44 6.42 -2.91 -0.02 5.42 16 Total: -1.00 -71.91 308.65 2.46 -69.45 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.64 Total: 25.45 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.69 Total: 15.92 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -5.51 Total: -133.55 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.70 Total: 47.50 kcal Total: -71.91 2.46 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027708319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.101 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds