Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48503 * 109.46990 * 265.16939 * 3 2 1 5 5 H 1.48495 * 109.47110 * 25.16528 * 3 2 1 6 6 H 1.48495 * 109.46976 * 145.16759 * 3 2 1 7 7 C 1.38816 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00024 * 342.99112 * 7 2 1 9 9 N 1.36939 * 119.99692 * 162.99448 * 7 2 1 10 10 C 1.47422 * 125.64450 * 331.88184 * 9 7 2 11 11 C 1.54910 * 104.92663 * 204.09789 * 10 9 7 12 12 C 1.55274 * 101.52906 * 323.12799 * 11 10 9 13 13 C 1.47020 * 125.64797 * 151.91473 * 9 7 2 14 14 H 1.09004 * 109.88307 * 59.49978 * 13 9 7 15 15 C 1.52999 * 109.88157 * 298.32892 * 13 9 7 16 16 N 1.46503 * 109.46967 * 56.69747 * 15 13 9 17 17 C 1.34770 * 120.00033 * 185.93883 * 16 15 13 18 18 O 1.21554 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.47840 * 120.00022 * 179.97438 * 17 16 15 20 20 C 1.40034 * 120.56029 * 179.97438 * 19 17 16 21 21 C 1.38352 * 118.28803 * 179.97438 * 20 19 17 22 22 C 1.38353 * 119.30506 * 359.97438 * 21 20 19 23 23 N 1.31928 * 121.07940 * 359.97438 * 22 21 20 24 24 C 1.31698 * 121.87947 * 359.76938 * 23 22 21 25 25 H 0.97002 * 119.99840 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.37166 * 322.99134 * 10 9 7 27 27 H 1.08999 * 110.36472 * 85.20954 * 10 9 7 28 28 H 1.09003 * 111.00230 * 81.12152 * 11 10 9 29 29 H 1.09000 * 111.00351 * 204.97298 * 11 10 9 30 30 H 1.08994 * 110.62513 * 277.00863 * 12 11 10 31 31 H 1.09001 * 110.75415 * 153.77331 * 12 11 10 32 32 H 1.08999 * 109.46949 * 176.68865 * 15 13 9 33 33 H 1.08997 * 109.47538 * 296.69531 * 15 13 9 34 34 H 0.97003 * 119.99991 * 5.93350 * 16 15 13 35 35 H 1.07998 * 120.85255 * 359.97438 * 20 19 17 36 36 H 1.07995 * 120.34574 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.45985 * 180.02562 * 22 21 20 38 38 H 1.07993 * 119.71592 * 180.24703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5999 1.9874 -1.3951 5 1 1.4004 2.6799 0.5953 6 1 3.4930 1.4717 0.7997 7 6 2.0103 -1.2022 0.0005 8 1 1.5057 -2.1169 0.2745 9 7 3.3348 -1.2283 -0.3463 10 6 4.0027 -0.2824 -1.2588 11 6 5.2347 -1.0510 -1.7983 12 6 5.6701 -1.8581 -0.5453 13 6 4.3259 -2.2046 0.1291 14 1 4.0187 -3.2118 -0.1524 15 6 4.4659 -2.1057 1.6494 16 7 3.1563 -2.3070 2.2745 17 6 3.0124 -2.1448 3.6047 18 8 3.9693 -1.8320 4.2858 19 6 1.6907 -2.3474 4.2353 20 6 1.5281 -2.1826 5.6164 21 6 0.2705 -2.3834 6.1571 22 6 -0.7762 -2.7367 5.3241 23 7 -0.5936 -2.8840 4.0259 24 6 0.5829 -2.6991 3.4636 25 1 -0.4850 0.8401 -0.0004 26 1 3.3366 -0.0107 -2.0777 27 1 4.3191 0.6085 -0.7164 28 1 4.9530 -1.7179 -2.6132 29 1 6.0183 -0.3616 -2.1128 30 1 6.2847 -1.2438 0.1126 31 1 6.2010 -2.7649 -0.8352 32 1 5.1577 -2.8711 2.0011 33 1 4.8481 -1.1203 1.9159 34 1 2.3927 -2.5569 1.7310 35 1 2.3628 -1.9058 6.2433 36 1 0.1076 -2.2656 7.2181 37 1 -1.7590 -2.8937 5.7434 38 1 0.6920 -2.8252 2.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027708320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = 28.083713 kcal Electronic energy + Delta-G solvation = -21650.827365 eV Core-core repulsion = 18494.031055 eV Total energy + Delta-G solvation = -3156.796311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22647 -38.78095 -37.75850 -34.04834 -32.75031 -32.26666 -31.39814 -30.05907 -29.20366 -25.38160 -24.37300 -23.42286 -22.96265 -21.16372 -19.97713 -19.59945 -17.82508 -16.88025 -16.44381 -16.17537 -15.66067 -15.17144 -14.87571 -14.63211 -14.38914 -13.56455 -13.42427 -13.25354 -13.02441 -12.87788 -12.61886 -12.56794 -11.98679 -11.72842 -11.34594 -11.20093 -10.99563 -10.73965 -10.56397 -10.12834 -10.01854 -9.78127 -9.72595 -9.53968 -9.11649 -9.01525 -8.79373 -8.34809 -7.07536 -6.08722 -3.47776 0.91615 1.41538 3.26767 3.29781 3.42843 3.46362 3.71552 4.16381 4.43929 4.58322 4.86169 4.94153 5.09422 5.10307 5.13237 5.22599 5.27627 5.37253 5.52174 5.58532 5.74835 5.85263 5.88745 6.06897 6.07439 6.17567 6.21165 6.25411 6.32401 6.37353 6.60669 6.73236 6.75922 6.79715 7.05196 7.64455 8.08331 8.12604 8.17566 8.63882 8.74408 9.53924 10.08787 11.05363 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.006884 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.223971 B = 4066.368554 C = 4920.179790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.036 3.964 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.252 4.252 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.050 0.950 15 C 0.114 3.886 16 N -0.692 5.692 17 C 0.557 3.443 18 O -0.561 6.561 19 C -0.181 4.181 20 C -0.023 4.023 21 C -0.190 4.190 22 C 0.114 3.886 23 N -0.483 5.483 24 C 0.152 3.848 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.413 0.587 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.907 -5.545 5.469 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.165 4.165 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.345 5.345 17 C 0.342 3.658 18 O -0.442 6.442 19 C -0.186 4.186 20 C -0.050 4.050 21 C -0.209 4.209 22 C -0.043 4.043 23 N -0.192 5.192 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.598 -5.474 5.388 8.951 hybrid contribution 0.692 1.379 0.350 1.582 sum 5.290 -4.095 5.738 8.813 Atomic orbital electron populations 1.69781 1.05484 1.26947 1.51683 1.25185 0.95145 0.97649 0.98515 0.86863 0.79276 0.84235 0.77825 1.21156 1.23143 1.19903 1.18288 0.81815 0.93808 1.44019 0.89728 1.44792 1.05419 1.32738 1.49820 1.21965 0.93199 0.92965 0.93276 1.22734 0.97959 0.99014 0.97203 1.22545 0.96360 0.99996 0.97265 1.21359 0.89828 0.94798 0.90396 0.93193 1.21951 0.84047 1.00706 0.94450 1.46133 1.13663 1.67915 1.06820 1.18024 0.87336 0.77664 0.82732 1.90694 1.40690 1.49469 1.63355 1.21111 0.95823 1.06257 0.95440 1.21676 0.97633 0.91909 0.93785 1.22074 0.93714 1.03594 1.01556 1.22981 0.99073 0.92992 0.89290 1.67755 1.24434 1.14491 1.12482 1.23218 0.86707 0.90193 1.00534 0.92461 0.92500 0.95831 0.91243 0.91726 0.91391 0.91274 0.92759 0.91897 0.74486 0.83954 0.84511 0.82635 0.81693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.97 55.49 0.78 -25.13 16 2 C 0.04 0.99 5.46 -17.43 -0.10 0.90 16 3 Si 0.89 22.35 24.36 -169.99 -4.14 18.21 16 4 H -0.28 -6.93 6.85 56.52 0.39 -6.55 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.97 6.64 56.52 0.38 -6.59 16 7 C -0.25 -6.33 8.45 -15.06 -0.13 -6.46 16 8 H 0.09 2.17 6.65 -52.49 -0.35 1.83 16 9 N -0.60 -13.16 2.82 -162.57 -0.46 -13.62 16 10 C 0.11 2.26 4.78 -2.53 -0.01 2.25 16 11 C -0.13 -2.02 7.10 -24.52 -0.17 -2.20 16 12 C -0.12 -1.81 6.48 -24.83 -0.16 -1.97 16 13 C 0.14 2.56 3.42 -66.95 -0.23 2.33 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.11 2.10 5.27 -4.04 -0.02 2.08 16 16 N -0.69 -13.45 4.78 -61.25 -0.29 -13.74 16 17 C 0.56 11.09 7.78 -12.33 -0.10 11.00 16 18 O -0.56 -12.32 16.41 5.32 0.09 -12.23 16 19 C -0.18 -3.24 5.89 -104.82 -0.62 -3.86 16 20 C -0.02 -0.36 9.72 -38.87 -0.38 -0.73 16 21 C -0.19 -2.39 10.10 -39.50 -0.40 -2.79 16 22 C 0.11 1.56 11.17 -17.47 -0.20 1.36 16 23 N -0.48 -8.36 10.35 -12.91 -0.13 -8.50 16 24 C 0.15 2.74 10.71 -17.13 -0.18 2.56 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.06 1.23 7.41 -51.93 -0.38 0.85 16 27 H 0.02 0.52 5.24 -51.93 -0.27 0.25 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 34 H 0.41 8.10 3.59 -40.82 -0.15 7.95 16 35 H 0.14 2.02 7.74 -52.49 -0.41 1.62 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.17 3.07 6.35 -52.49 -0.33 2.74 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -31.37 307.56 -7.07 -38.43 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.85 Total: 7.46 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.69 Total: 4.47 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.11 Total: -60.98 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.37 -7.07 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027708320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.517 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds