Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48503 * 109.46990 * 265.16939 * 3 2 1 5 5 H 1.48495 * 109.47110 * 25.16528 * 3 2 1 6 6 H 1.48495 * 109.46976 * 145.16759 * 3 2 1 7 7 C 1.38816 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00024 * 342.99112 * 7 2 1 9 9 N 1.36939 * 119.99692 * 162.99448 * 7 2 1 10 10 C 1.47422 * 125.64450 * 331.88184 * 9 7 2 11 11 C 1.54910 * 104.92663 * 204.09789 * 10 9 7 12 12 C 1.55274 * 101.52906 * 323.12799 * 11 10 9 13 13 C 1.47020 * 125.64797 * 151.91473 * 9 7 2 14 14 H 1.09004 * 109.88307 * 59.49978 * 13 9 7 15 15 C 1.52999 * 109.88157 * 298.32892 * 13 9 7 16 16 N 1.46503 * 109.46967 * 56.69747 * 15 13 9 17 17 C 1.34770 * 120.00033 * 185.93883 * 16 15 13 18 18 O 1.21554 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.47840 * 120.00022 * 179.97438 * 17 16 15 20 20 C 1.40034 * 120.56029 * 179.97438 * 19 17 16 21 21 C 1.38352 * 118.28803 * 179.97438 * 20 19 17 22 22 C 1.38353 * 119.30506 * 359.97438 * 21 20 19 23 23 N 1.31928 * 121.07940 * 359.97438 * 22 21 20 24 24 C 1.31698 * 121.87947 * 359.76938 * 23 22 21 25 25 H 0.97002 * 119.99840 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.37166 * 322.99134 * 10 9 7 27 27 H 1.08999 * 110.36472 * 85.20954 * 10 9 7 28 28 H 1.09003 * 111.00230 * 81.12152 * 11 10 9 29 29 H 1.09000 * 111.00351 * 204.97298 * 11 10 9 30 30 H 1.08994 * 110.62513 * 277.00863 * 12 11 10 31 31 H 1.09001 * 110.75415 * 153.77331 * 12 11 10 32 32 H 1.08999 * 109.46949 * 176.68865 * 15 13 9 33 33 H 1.08997 * 109.47538 * 296.69531 * 15 13 9 34 34 H 0.97003 * 119.99991 * 5.93350 * 16 15 13 35 35 H 1.07998 * 120.85255 * 359.97438 * 20 19 17 36 36 H 1.07995 * 120.34574 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.45985 * 180.02562 * 22 21 20 38 38 H 1.07993 * 119.71592 * 180.24703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5999 1.9874 -1.3951 5 1 1.4004 2.6799 0.5953 6 1 3.4930 1.4717 0.7997 7 6 2.0103 -1.2022 0.0005 8 1 1.5057 -2.1169 0.2745 9 7 3.3348 -1.2283 -0.3463 10 6 4.0027 -0.2824 -1.2588 11 6 5.2347 -1.0510 -1.7983 12 6 5.6701 -1.8581 -0.5453 13 6 4.3259 -2.2046 0.1291 14 1 4.0187 -3.2118 -0.1524 15 6 4.4659 -2.1057 1.6494 16 7 3.1563 -2.3070 2.2745 17 6 3.0124 -2.1448 3.6047 18 8 3.9693 -1.8320 4.2858 19 6 1.6907 -2.3474 4.2353 20 6 1.5281 -2.1826 5.6164 21 6 0.2705 -2.3834 6.1571 22 6 -0.7762 -2.7367 5.3241 23 7 -0.5936 -2.8840 4.0259 24 6 0.5829 -2.6991 3.4636 25 1 -0.4850 0.8401 -0.0004 26 1 3.3366 -0.0107 -2.0777 27 1 4.3191 0.6085 -0.7164 28 1 4.9530 -1.7179 -2.6132 29 1 6.0183 -0.3616 -2.1128 30 1 6.2847 -1.2438 0.1126 31 1 6.2010 -2.7649 -0.8352 32 1 5.1577 -2.8711 2.0011 33 1 4.8481 -1.1203 1.9159 34 1 2.3927 -2.5569 1.7310 35 1 2.3628 -1.9058 6.2433 36 1 0.1076 -2.2656 7.2181 37 1 -1.7590 -2.8937 5.7434 38 1 0.6920 -2.8252 2.3966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027708320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = 6.002134 kcal Electronic energy + Delta-G solvation = -21651.784895 eV Core-core repulsion = 18494.031055 eV Total energy + Delta-G solvation = -3157.753840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56895 -40.22469 -39.28833 -35.59268 -34.67046 -33.52041 -32.65736 -31.80386 -30.64343 -26.86144 -26.03859 -24.81873 -24.30081 -22.60393 -21.49986 -21.07224 -19.40392 -18.50884 -17.79640 -17.47496 -17.27153 -16.92831 -16.32993 -16.11426 -15.66053 -15.23633 -14.94367 -14.83460 -14.52109 -14.23619 -14.09523 -14.06408 -13.41764 -13.15138 -13.02754 -12.80115 -12.71291 -12.31787 -12.07414 -11.80611 -11.64239 -11.32585 -11.20106 -10.96415 -10.80980 -10.43353 -10.27184 -9.89486 -8.94236 -8.18729 -5.50314 -0.34472 0.22158 1.23685 1.34391 1.40137 1.83484 2.26101 2.38535 2.87253 3.11257 3.28524 3.37055 3.78165 3.85426 3.85889 3.93049 4.00242 4.05420 4.17714 4.31123 4.45092 4.47444 4.65482 4.68437 4.73757 4.81241 5.01463 5.02581 5.03206 5.11436 5.15941 5.28218 5.48683 5.52022 5.61492 5.74864 6.09326 6.56436 6.76306 6.89053 7.17417 7.53745 8.15849 8.99058 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.006884 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.223971 B = 4066.368554 C = 4920.179790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.016 4.016 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.319 1.319 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.074 0.926 9 N -0.619 5.619 10 C 0.099 3.901 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.062 0.938 15 C 0.115 3.885 16 N -0.697 5.697 17 C 0.553 3.447 18 O -0.587 6.587 19 C -0.204 4.204 20 C -0.030 4.030 21 C -0.167 4.167 22 C 0.115 3.885 23 N -0.512 5.512 24 C 0.136 3.864 25 H 0.259 0.741 26 H 0.038 0.962 27 H 0.010 0.990 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.411 0.589 35 H 0.152 0.848 36 H 0.186 0.814 37 H 0.198 0.802 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -6.515 6.367 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.248 1.248 6 H -0.207 1.207 7 C -0.347 4.347 8 H 0.091 0.909 9 N -0.344 5.344 10 C -0.026 4.026 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.033 3.967 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.349 5.349 17 C 0.340 3.660 18 O -0.470 6.470 19 C -0.209 4.209 20 C -0.057 4.057 21 C -0.186 4.186 22 C -0.042 4.042 23 N -0.221 5.221 24 C -0.021 4.021 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.252 0.748 35 H 0.169 0.831 36 H 0.203 0.797 37 H 0.214 0.786 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.019 -6.459 6.257 10.821 hybrid contribution 0.263 1.572 0.156 1.601 sum 6.281 -4.887 6.413 10.221 Atomic orbital electron populations 1.69877 1.06547 1.26709 1.55469 1.25605 0.95494 0.99652 1.00464 0.86168 0.77638 0.82060 0.77955 1.20017 1.24828 1.20685 1.18349 0.83312 0.92882 1.40174 0.90888 1.45004 1.05152 1.33585 1.50696 1.22069 0.95044 0.93060 0.92392 1.22697 0.96034 0.99090 0.97661 1.22585 0.94483 1.01682 0.96410 1.21609 0.90831 0.94119 0.90154 0.92043 1.21994 0.83992 1.00204 0.94873 1.46221 1.14016 1.67699 1.06964 1.18385 0.87968 0.76962 0.82708 1.90658 1.41682 1.50891 1.63794 1.21045 0.94620 1.08381 0.96825 1.21953 0.99352 0.91739 0.92639 1.22546 0.91806 1.00540 1.03681 1.23744 1.01242 0.91153 0.88059 1.67740 1.23980 1.15600 1.14739 1.22934 0.87506 0.91732 0.99939 0.93197 0.94367 0.97238 0.90024 0.88912 0.90794 0.87450 0.90285 0.94202 0.74810 0.83057 0.79710 0.78569 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 13.97 21.65 0.30 -56.22 16 2 C -0.02 -0.87 5.46 84.86 0.46 -0.41 16 3 Si 0.93 47.49 24.36 68.60 1.67 49.16 16 4 H -0.27 -13.26 6.85 99.48 0.68 -12.58 16 5 H -0.32 -16.92 7.11 99.48 0.71 -16.21 16 6 H -0.28 -14.42 6.64 99.48 0.66 -13.76 16 7 C -0.22 -11.21 8.45 84.03 0.71 -10.50 16 8 H 0.07 3.90 6.65 -2.91 -0.02 3.88 16 9 N -0.62 -26.81 2.82 -668.26 -1.89 -28.69 16 10 C 0.10 3.93 4.78 86.86 0.42 4.35 16 11 C -0.12 -3.21 7.10 32.03 0.23 -2.98 16 12 C -0.11 -2.90 6.48 31.83 0.21 -2.70 16 13 C 0.14 4.72 3.42 45.34 0.15 4.88 16 14 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 15 C 0.11 4.14 5.27 86.38 0.46 4.59 16 16 N -0.70 -27.60 4.78 -465.98 -2.23 -29.82 16 17 C 0.55 22.47 7.78 86.79 0.68 23.15 16 18 O -0.59 -26.03 16.41 -3.88 -0.06 -26.09 16 19 C -0.20 -7.39 5.89 -19.99 -0.12 -7.50 16 20 C -0.03 -0.88 9.72 22.73 0.22 -0.66 16 21 C -0.17 -3.65 10.10 22.32 0.23 -3.42 16 22 C 0.11 2.85 11.17 84.71 0.95 3.79 16 23 N -0.51 -17.60 10.35 -194.76 -2.01 -19.61 16 24 C 0.14 5.10 10.71 85.02 0.91 6.01 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.04 1.64 7.41 -2.39 -0.02 1.62 16 27 H 0.01 0.43 5.24 -2.39 -0.01 0.41 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.84 7.79 -2.39 -0.02 1.83 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 34 H 0.41 16.71 3.59 -92.71 -0.33 16.38 16 35 H 0.15 4.08 7.74 -2.91 -0.02 4.06 16 36 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.15 5.82 6.35 -2.91 -0.02 5.80 16 Total: -1.00 -71.24 307.56 1.95 -69.29 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.67 Total: 23.39 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 5.49 Total: 18.59 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -5.82 Total: -134.35 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -71.24 1.95 -69.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027708320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.292 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds