Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86790 * 120.00424 * 2 1 4 4 H 1.48501 * 109.47151 * 354.59092 * 3 2 1 5 5 H 1.48496 * 109.47322 * 234.59410 * 3 2 1 6 6 H 1.48502 * 109.47137 * 114.59064 * 3 2 1 7 7 C 1.38817 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99996 * 8.56609 * 7 2 1 9 9 N 1.36930 * 119.99784 * 188.56201 * 7 2 1 10 10 C 1.47422 * 125.64981 * 29.03239 * 9 7 2 11 11 C 1.55132 * 104.72504 * 155.81221 * 10 9 7 12 12 C 1.55167 * 101.48034 * 37.29902 * 11 10 9 13 13 C 1.47021 * 125.64850 * 209.33947 * 9 7 2 14 14 H 1.08998 * 109.88299 * 300.44323 * 13 9 7 15 15 C 1.52998 * 109.88373 * 61.60563 * 13 9 7 16 16 N 1.46497 * 109.47088 * 300.67369 * 15 13 9 17 17 C 1.34784 * 120.00013 * 173.93389 * 16 15 13 18 18 O 1.21514 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.48171 * 119.99943 * 179.97438 * 17 16 15 20 20 C 1.39308 * 119.72072 * 179.72685 * 19 17 16 21 21 C 1.38586 * 119.05841 * 179.71322 * 20 19 17 22 22 C 1.38628 * 118.48785 * 0.55213 * 21 20 19 23 23 C 1.38565 * 119.35004 * 359.72514 * 22 21 20 24 24 N 1.31522 * 120.90525 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99913 * 184.93627 * 1 2 3 26 26 H 1.08993 * 110.36999 * 274.74790 * 10 9 7 27 27 H 1.09007 * 110.36514 * 37.07247 * 10 9 7 28 28 H 1.09001 * 111.19509 * 279.19575 * 11 10 9 29 29 H 1.09001 * 110.90633 * 155.27087 * 11 10 9 30 30 H 1.09004 * 110.71651 * 205.96576 * 12 11 10 31 31 H 1.08994 * 110.72183 * 82.69398 * 12 11 10 32 32 H 1.09006 * 109.46870 * 60.66974 * 15 13 9 33 33 H 1.08999 * 109.47534 * 180.66911 * 15 13 9 34 34 H 0.96999 * 120.00334 * 353.92676 * 16 15 13 35 35 H 1.08004 * 120.46962 * 359.97438 * 20 19 17 36 36 H 1.07997 * 120.75783 * 180.28323 * 21 20 19 37 37 H 1.08000 * 120.32699 * 179.75688 * 22 21 20 38 38 H 1.08001 * 119.54591 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2908 2.7433 -0.1320 5 1 3.2003 1.6407 -1.1411 6 1 3.0024 1.7549 1.2731 7 6 2.0103 -1.2022 0.0005 8 1 1.4792 -2.1324 -0.1384 9 7 3.3681 -1.2088 0.1771 10 6 4.1402 -0.2114 0.9403 11 6 5.4349 -0.9542 1.3628 12 6 5.7147 -1.8247 0.1092 13 6 4.2983 -2.2082 -0.3684 14 1 4.0375 -3.1991 0.0032 15 6 4.2423 -2.1914 -1.8972 16 7 2.8779 -2.4896 -2.3392 17 6 2.5603 -2.4094 -3.6467 18 8 3.4057 -2.0892 -4.4587 19 6 1.1804 -2.7117 -4.0938 20 6 0.8571 -2.6214 -5.4458 21 6 -0.4362 -2.9129 -5.8496 22 6 -1.3645 -3.2735 -4.8853 23 6 -0.9744 -3.3371 -3.5572 24 7 0.2615 -3.0610 -3.2022 25 1 -0.4850 -0.8369 0.0723 26 1 4.3799 0.6455 0.3108 27 1 3.5821 0.1077 1.8206 28 1 5.2633 -1.5771 2.2407 29 1 6.2478 -0.2496 1.5385 30 1 6.2856 -2.7139 0.3768 31 1 6.2354 -1.2460 -0.6537 32 1 4.5348 -1.2062 -2.2607 33 1 4.9252 -2.9425 -2.2942 34 1 2.2029 -2.7450 -1.6910 35 1 1.6048 -2.3324 -6.1696 36 1 -0.7156 -2.8562 -6.8913 37 1 -2.3817 -3.5031 -5.1664 38 1 -1.6952 -3.6173 -2.8033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027709706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = 27.723601 kcal Electronic energy + Delta-G solvation = -21627.335453 eV Core-core repulsion = 18470.523527 eV Total energy + Delta-G solvation = -3156.811926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22483 -38.69661 -37.68180 -33.96247 -32.72772 -32.37957 -31.23626 -29.81577 -29.25712 -25.39061 -24.07022 -23.35412 -22.88362 -21.14735 -19.95897 -19.46637 -17.89618 -17.13043 -16.44084 -15.88850 -15.60103 -15.04331 -14.85225 -14.69517 -14.46594 -13.50699 -13.42775 -13.33982 -13.15877 -12.96733 -12.54695 -12.26868 -11.81409 -11.65708 -11.29771 -11.07134 -10.91054 -10.66437 -10.43217 -9.94705 -9.83628 -9.80791 -9.40791 -9.17235 -9.04440 -9.02188 -8.65621 -8.24857 -6.96157 -6.29373 -3.35102 0.89752 1.39050 3.19081 3.42594 3.54706 3.70537 3.72812 4.21529 4.50087 4.62202 4.89362 4.97152 5.08443 5.11571 5.21698 5.24907 5.33379 5.47868 5.57124 5.64988 5.83782 5.86910 5.94179 6.08660 6.12034 6.14549 6.20713 6.27143 6.33468 6.40900 6.66264 6.73913 6.77830 6.86522 7.14804 7.81922 7.96004 8.33528 8.36823 8.82627 9.02004 9.54066 10.27433 11.17313 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.006757 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.829610 B = 4142.806666 C = 4982.317072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 1.060 2.940 4 H -0.301 1.301 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.321 4.321 8 H 0.074 0.926 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.045 0.955 15 C 0.113 3.887 16 N -0.674 5.674 17 C 0.561 3.439 18 O -0.560 6.560 19 C 0.091 3.909 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.159 4.159 23 C 0.101 3.899 24 N -0.443 5.443 25 H 0.264 0.736 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.421 0.579 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 -6.893 -5.821 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.206 4.206 3 Si 0.892 3.108 4 H -0.229 1.229 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.448 4.448 8 H 0.091 0.909 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.062 0.938 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.345 3.655 18 O -0.440 6.440 19 C -0.048 4.048 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.180 4.180 23 C -0.058 4.058 24 N -0.154 5.154 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.263 0.737 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.380 -5.079 -5.514 8.224 hybrid contribution -0.519 -1.570 -0.623 1.767 sum 2.861 -6.649 -6.138 9.490 Atomic orbital electron populations 1.70875 1.05843 1.29655 1.49541 1.26083 0.96486 1.00993 0.96999 0.83947 0.73923 0.76368 0.76550 1.22921 1.22065 1.21205 1.19891 0.79690 0.94591 1.50647 0.90891 1.44867 1.02781 1.28107 1.57175 1.22209 0.91746 0.92559 0.95082 1.22773 0.98039 0.98744 0.97400 1.22525 0.96068 0.99670 0.97935 1.21338 0.90249 0.94595 0.90264 0.93759 1.21992 0.82549 1.00160 0.96652 1.46000 1.13631 1.65516 1.07424 1.17898 0.85954 0.78294 0.83348 1.90699 1.49308 1.50096 1.53883 1.21314 0.94298 0.98637 0.90531 1.22094 0.97448 0.98113 0.96446 1.21542 0.92775 0.96744 1.00219 1.22326 1.00716 1.00353 0.94556 1.22832 0.92695 0.95398 0.94895 1.67655 1.02053 1.08255 1.37461 0.92608 0.95941 0.92166 0.91387 0.91748 0.91460 0.91341 0.91791 0.92934 0.73707 0.83765 0.84487 0.84583 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.97 13.70 55.49 0.76 -27.21 16 2 C 0.00 -0.10 5.50 -17.42 -0.10 -0.20 16 3 Si 1.06 26.96 24.71 -169.99 -4.20 22.76 16 4 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.29 -7.49 7.05 56.52 0.40 -7.09 16 6 H -0.28 -6.58 5.58 56.52 0.32 -6.27 16 7 C -0.32 -8.58 8.49 -15.06 -0.13 -8.71 16 8 H 0.07 2.06 6.80 -52.48 -0.36 1.71 16 9 N -0.60 -13.99 2.86 -162.44 -0.47 -14.46 16 10 C 0.11 2.30 4.52 -2.41 -0.01 2.29 16 11 C -0.13 -2.13 7.10 -24.46 -0.17 -2.30 16 12 C -0.12 -1.93 6.47 -24.89 -0.16 -2.09 16 13 C 0.14 2.76 3.37 -66.96 -0.23 2.54 16 14 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.11 2.23 5.22 -4.04 -0.02 2.21 16 16 N -0.67 -14.48 4.80 -61.14 -0.29 -14.78 16 17 C 0.56 12.08 7.81 -12.18 -0.10 11.98 16 18 O -0.56 -12.80 16.31 5.35 0.09 -12.72 16 19 C 0.09 1.75 6.75 -83.01 -0.56 1.19 16 20 C -0.12 -1.90 9.63 -39.05 -0.38 -2.27 16 21 C -0.09 -1.08 10.17 -39.31 -0.40 -1.48 16 22 C -0.16 -1.93 10.11 -39.32 -0.40 -2.33 16 23 C 0.10 1.52 11.18 -17.56 -0.20 1.33 16 24 N -0.44 -8.40 9.54 -9.80 -0.09 -8.49 16 25 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 26 H 0.02 0.50 5.44 -51.93 -0.28 0.22 16 27 H 0.06 1.34 6.63 -51.93 -0.34 1.00 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.02 7.83 -51.93 -0.41 0.62 16 32 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.42 9.47 5.14 -40.82 -0.21 9.26 16 35 H 0.14 2.14 7.64 -52.48 -0.40 1.74 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -32.85 309.19 -7.43 -40.28 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.05 Total: 7.80 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.84 Total: 2.16 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.09 Total: -64.94 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 26.96 SS G_CDS: -4.20 Total: 22.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.85 -7.43 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027709706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.007 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds