Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86790 * 120.00424 * 2 1 4 4 H 1.48501 * 109.47151 * 354.59092 * 3 2 1 5 5 H 1.48496 * 109.47322 * 234.59410 * 3 2 1 6 6 H 1.48502 * 109.47137 * 114.59064 * 3 2 1 7 7 C 1.38817 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99996 * 8.56609 * 7 2 1 9 9 N 1.36930 * 119.99784 * 188.56201 * 7 2 1 10 10 C 1.47422 * 125.64981 * 29.03239 * 9 7 2 11 11 C 1.55132 * 104.72504 * 155.81221 * 10 9 7 12 12 C 1.55167 * 101.48034 * 37.29902 * 11 10 9 13 13 C 1.47021 * 125.64850 * 209.33947 * 9 7 2 14 14 H 1.08998 * 109.88299 * 300.44323 * 13 9 7 15 15 C 1.52998 * 109.88373 * 61.60563 * 13 9 7 16 16 N 1.46497 * 109.47088 * 300.67369 * 15 13 9 17 17 C 1.34784 * 120.00013 * 173.93389 * 16 15 13 18 18 O 1.21514 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.48171 * 119.99943 * 179.97438 * 17 16 15 20 20 C 1.39308 * 119.72072 * 179.72685 * 19 17 16 21 21 C 1.38586 * 119.05841 * 179.71322 * 20 19 17 22 22 C 1.38628 * 118.48785 * 0.55213 * 21 20 19 23 23 C 1.38565 * 119.35004 * 359.72514 * 22 21 20 24 24 N 1.31522 * 120.90525 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99913 * 184.93627 * 1 2 3 26 26 H 1.08993 * 110.36999 * 274.74790 * 10 9 7 27 27 H 1.09007 * 110.36514 * 37.07247 * 10 9 7 28 28 H 1.09001 * 111.19509 * 279.19575 * 11 10 9 29 29 H 1.09001 * 110.90633 * 155.27087 * 11 10 9 30 30 H 1.09004 * 110.71651 * 205.96576 * 12 11 10 31 31 H 1.08994 * 110.72183 * 82.69398 * 12 11 10 32 32 H 1.09006 * 109.46870 * 60.66974 * 15 13 9 33 33 H 1.08999 * 109.47534 * 180.66911 * 15 13 9 34 34 H 0.96999 * 120.00334 * 353.92676 * 16 15 13 35 35 H 1.08004 * 120.46962 * 359.97438 * 20 19 17 36 36 H 1.07997 * 120.75783 * 180.28323 * 21 20 19 37 37 H 1.08000 * 120.32699 * 179.75688 * 22 21 20 38 38 H 1.08001 * 119.54591 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2908 2.7433 -0.1320 5 1 3.2003 1.6407 -1.1411 6 1 3.0024 1.7549 1.2731 7 6 2.0103 -1.2022 0.0005 8 1 1.4792 -2.1324 -0.1384 9 7 3.3681 -1.2088 0.1771 10 6 4.1402 -0.2114 0.9403 11 6 5.4349 -0.9542 1.3628 12 6 5.7147 -1.8247 0.1092 13 6 4.2983 -2.2082 -0.3684 14 1 4.0375 -3.1991 0.0032 15 6 4.2423 -2.1914 -1.8972 16 7 2.8779 -2.4896 -2.3392 17 6 2.5603 -2.4094 -3.6467 18 8 3.4057 -2.0892 -4.4587 19 6 1.1804 -2.7117 -4.0938 20 6 0.8571 -2.6214 -5.4458 21 6 -0.4362 -2.9129 -5.8496 22 6 -1.3645 -3.2735 -4.8853 23 6 -0.9744 -3.3371 -3.5572 24 7 0.2615 -3.0610 -3.2022 25 1 -0.4850 -0.8369 0.0723 26 1 4.3799 0.6455 0.3108 27 1 3.5821 0.1077 1.8206 28 1 5.2633 -1.5771 2.2407 29 1 6.2478 -0.2496 1.5385 30 1 6.2856 -2.7139 0.3768 31 1 6.2354 -1.2460 -0.6537 32 1 4.5348 -1.2062 -2.2607 33 1 4.9252 -2.9425 -2.2942 34 1 2.2029 -2.7450 -1.6910 35 1 1.6048 -2.3324 -6.1696 36 1 -0.7156 -2.8562 -6.8913 37 1 -2.3817 -3.5031 -5.1664 38 1 -1.6952 -3.6173 -2.8033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027709706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = 3.724748 kcal Electronic energy + Delta-G solvation = -21628.376122 eV Core-core repulsion = 18470.523527 eV Total energy + Delta-G solvation = -3157.852595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56598 -40.20892 -39.28075 -35.59115 -34.75106 -33.56288 -32.48810 -31.63114 -30.78091 -26.89843 -25.74986 -24.74511 -24.29251 -22.65338 -21.51262 -21.05623 -19.73043 -18.76833 -17.78306 -17.32270 -16.93925 -16.73261 -16.37627 -16.22272 -15.80719 -15.38687 -15.11826 -14.82962 -14.75093 -14.13232 -14.04611 -13.82859 -13.31335 -12.97941 -12.90516 -12.75038 -12.68414 -12.18393 -12.06130 -11.49338 -11.36468 -11.26577 -11.15129 -10.96167 -10.67885 -10.46368 -10.28786 -9.90173 -8.95485 -8.50053 -5.49425 -0.34197 0.27733 1.37255 1.47689 1.65569 1.71786 2.23796 2.54061 2.89923 3.17771 3.26139 3.33189 3.82696 3.86410 3.94909 3.99693 4.06279 4.09219 4.14879 4.31351 4.40637 4.49591 4.60445 4.73437 4.74512 4.78018 5.00812 5.03521 5.05785 5.11185 5.15192 5.25932 5.46769 5.51009 5.65051 5.76681 6.26324 6.49293 6.86447 6.90514 7.17428 7.49952 8.22152 8.96442 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.006757 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.829610 B = 4142.806666 C = 4982.317072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.060 4.060 3 Si 1.091 2.909 4 H -0.317 1.317 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.288 4.288 8 H 0.049 0.951 9 N -0.622 5.622 10 C 0.095 3.905 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.047 0.953 15 C 0.112 3.888 16 N -0.684 5.684 17 C 0.552 3.448 18 O -0.584 6.584 19 C 0.047 3.953 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.134 4.134 23 C 0.080 3.920 24 N -0.484 5.484 25 H 0.251 0.749 26 H 0.017 0.983 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.147 0.853 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -7.602 -6.429 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.255 4.255 3 Si 0.920 3.080 4 H -0.246 1.246 5 H -0.227 1.227 6 H -0.172 1.172 7 C -0.417 4.417 8 H 0.067 0.933 9 N -0.349 5.349 10 C -0.029 4.029 11 C -0.155 4.155 12 C -0.151 4.151 13 C 0.032 3.968 14 H 0.065 0.935 15 C -0.013 4.013 16 N -0.334 5.334 17 C 0.338 3.662 18 O -0.466 6.466 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.102 4.102 22 C -0.154 4.154 23 C -0.080 4.080 24 N -0.196 5.196 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.165 0.835 36 H 0.202 0.798 37 H 0.202 0.798 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.410 -5.808 -6.099 9.507 hybrid contribution -0.878 -1.491 -0.500 1.802 sum 3.531 -7.299 -6.599 10.455 Atomic orbital electron populations 1.70947 1.06905 1.28829 1.53534 1.26945 0.96603 1.03740 0.98200 0.83564 0.73018 0.73404 0.77990 1.24582 1.22654 1.17248 1.19713 0.81656 0.93218 1.47114 0.93312 1.45020 1.02211 1.29306 1.58328 1.22346 0.93878 0.92603 0.94093 1.22736 0.96003 0.98930 0.97794 1.22560 0.93580 1.01274 0.97716 1.21553 0.92004 0.93609 0.89612 0.93500 1.22045 0.82415 0.99639 0.97195 1.46115 1.14042 1.65708 1.07550 1.18427 0.87183 0.77541 0.83065 1.90647 1.50406 1.51348 1.54226 1.21134 0.93428 1.02272 0.92140 1.22286 0.99376 0.97911 0.94955 1.22079 0.90928 0.94585 1.02570 1.22830 1.02695 0.97027 0.92843 1.23348 0.91763 0.95582 0.97263 1.67513 1.03695 1.09716 1.38638 0.93983 0.96560 0.93649 0.90337 0.88424 0.87775 0.90416 0.93981 0.90564 0.74578 0.83526 0.79829 0.79792 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.86 13.70 21.65 0.30 -60.56 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 1.09 55.61 24.71 68.60 1.70 57.30 16 4 H -0.32 -16.82 7.11 99.48 0.71 -16.11 16 5 H -0.30 -15.28 7.05 99.48 0.70 -14.58 16 6 H -0.25 -11.00 5.58 99.48 0.55 -10.45 16 7 C -0.29 -15.88 8.49 84.04 0.71 -15.17 16 8 H 0.05 2.91 6.80 -2.91 -0.02 2.89 16 9 N -0.62 -28.77 2.86 -667.83 -1.91 -30.69 16 10 C 0.10 3.86 4.52 86.93 0.39 4.25 16 11 C -0.12 -3.33 7.10 32.07 0.23 -3.10 16 12 C -0.11 -3.11 6.47 31.79 0.21 -2.91 16 13 C 0.14 5.20 3.37 45.34 0.15 5.35 16 14 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 15 C 0.11 4.48 5.22 86.38 0.45 4.93 16 16 N -0.68 -30.56 4.80 -465.65 -2.23 -32.79 16 17 C 0.55 24.83 7.81 86.88 0.68 25.51 16 18 O -0.58 -27.66 16.31 -3.76 -0.06 -27.73 16 19 C 0.05 1.88 6.75 41.91 0.28 2.16 16 20 C -0.12 -3.87 9.63 22.61 0.22 -3.65 16 21 C -0.08 -1.66 10.17 22.45 0.23 -1.43 16 22 C -0.13 -2.84 10.11 22.44 0.23 -2.61 16 23 C 0.08 2.37 11.18 84.82 0.95 3.32 16 24 N -0.48 -19.01 9.54 -184.91 -1.76 -20.78 16 25 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 26 H 0.02 0.71 5.44 -2.39 -0.01 0.69 16 27 H 0.05 1.96 6.63 -2.38 -0.02 1.94 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.04 7.83 -2.39 -0.02 2.02 16 32 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.41 19.64 5.14 -92.71 -0.48 19.16 16 35 H 0.15 4.35 7.64 -2.91 -0.02 4.33 16 36 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -76.92 309.19 1.61 -75.31 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.40 Total: 26.32 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.19 Total: 13.61 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -5.61 Total: -144.82 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 55.61 SS G_CDS: 1.70 Total: 57.30 kcal Total: -76.92 1.61 -75.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027709706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.033 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds