Wall clock time and date at job start Mon Mar 30 2020 02:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48501 * 109.46904 * 90.00315 * 3 2 1 5 5 H 1.48498 * 109.47253 * 330.00636 * 3 2 1 6 6 H 1.48501 * 109.47115 * 210.00247 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99826 * 19.97435 * 7 2 1 9 9 N 1.36935 * 120.00325 * 199.97027 * 7 2 1 10 10 C 1.47427 * 125.64394 * 20.93410 * 9 7 2 11 11 C 1.54916 * 104.83001 * 155.83138 * 10 9 7 12 12 C 1.55161 * 101.58081 * 37.01141 * 11 10 9 13 13 C 1.47023 * 125.65109 * 200.62069 * 9 7 2 14 14 H 1.09001 * 109.88351 * 300.51776 * 13 9 7 15 15 C 1.53009 * 109.87902 * 61.68145 * 13 9 7 16 16 N 1.46496 * 109.47270 * 300.82311 * 15 13 9 17 17 C 1.34776 * 119.99798 * 173.60036 * 16 15 13 18 18 O 1.21508 * 120.00015 * 359.97438 * 17 16 15 19 19 C 1.48149 * 119.99430 * 179.97438 * 17 16 15 20 20 C 1.39820 * 120.92740 * 359.71829 * 19 17 16 21 21 C 1.38147 * 118.99715 * 179.75391 * 20 19 17 22 22 N 1.31812 * 120.90320 * 0.53608 * 21 20 19 23 23 C 1.31816 * 122.04287 * 359.73629 * 22 21 20 24 24 C 1.38142 * 120.89879 * 359.97438 * 23 22 21 25 25 H 0.96996 * 120.00155 * 174.90750 * 1 2 3 26 26 H 1.08999 * 110.36652 * 274.66706 * 10 9 7 27 27 H 1.09000 * 110.36478 * 36.99546 * 10 9 7 28 28 H 1.09001 * 111.00190 * 155.08302 * 11 10 9 29 29 H 1.08996 * 111.00234 * 278.89827 * 11 10 9 30 30 H 1.08989 * 110.72217 * 82.85828 * 12 11 10 31 31 H 1.09002 * 110.71921 * 205.96112 * 12 11 10 32 32 H 1.09002 * 109.46836 * 60.82621 * 15 13 9 33 33 H 1.08994 * 109.46617 * 180.82146 * 15 13 9 34 34 H 0.97007 * 119.99587 * 353.60220 * 16 15 13 35 35 H 1.07994 * 120.49600 * 0.02562 * 20 19 17 36 36 H 1.08004 * 119.54775 * 180.27438 * 21 20 19 37 37 H 1.08004 * 119.54844 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.50043 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4401 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.5189 -2.1092 -0.3205 9 7 3.3178 -1.2380 0.4045 10 6 3.9825 -0.2318 1.2524 11 6 5.1613 -0.9878 1.9149 12 6 5.6187 -1.9218 0.7634 13 6 4.2896 -2.2897 0.0710 14 1 3.9334 -3.2530 0.4363 15 6 4.4940 -2.3478 -1.4442 16 7 3.2135 -2.6251 -2.0995 17 6 3.1238 -2.5939 -3.4439 18 8 4.1050 -2.3355 -4.1124 19 6 1.8289 -2.8749 -4.1065 20 6 0.6892 -3.1802 -3.3564 21 6 -0.4990 -3.4304 -4.0153 22 7 -0.5639 -3.3946 -5.3313 23 6 0.4876 -3.1164 -6.0760 24 6 1.7140 -2.8478 -5.4998 25 1 -0.4850 -0.8367 -0.0746 26 1 4.3547 0.5917 0.6430 27 1 3.2943 0.1382 2.0123 28 1 5.9570 -0.2989 2.1986 29 1 4.8215 -1.5645 2.7750 30 1 6.2813 -1.3933 0.0782 31 1 6.1068 -2.8122 1.1599 32 1 4.8824 -1.3917 -1.7953 33 1 5.2042 -3.1389 -1.6849 34 1 2.4301 -2.8310 -1.5657 35 1 0.7360 -3.2154 -2.2781 36 1 -1.3859 -3.6627 -3.4444 37 1 0.3889 -3.0984 -7.1514 38 1 2.5712 -2.6203 -6.1161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027721461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:16 Heat of formation + Delta-G solvation = 26.903257 kcal Electronic energy + Delta-G solvation = -21582.805874 eV Core-core repulsion = 18425.958375 eV Total energy + Delta-G solvation = -3156.847499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32158 -38.89810 -37.84486 -34.17521 -32.90266 -32.47416 -31.13233 -29.93127 -29.39193 -25.52390 -24.25524 -23.40298 -22.95339 -21.24303 -20.10402 -19.61627 -18.12709 -17.21807 -16.41014 -15.84640 -15.57871 -15.19137 -14.95315 -14.83917 -14.64837 -13.68170 -13.65130 -13.58917 -13.29492 -13.17067 -12.76024 -12.40566 -11.77249 -11.60113 -11.41953 -11.09019 -11.00346 -10.77132 -10.53626 -10.07889 -9.93655 -9.73144 -9.58984 -9.34319 -9.27707 -9.09215 -8.70125 -8.49070 -7.20629 -6.42370 -3.42363 0.90420 1.20397 3.20361 3.35070 3.47746 3.55498 3.61099 4.04745 4.47926 4.50274 4.80612 4.87247 4.97783 5.12644 5.15284 5.18349 5.21118 5.32709 5.50399 5.61437 5.75307 5.81836 5.84218 5.96200 6.01898 6.04121 6.17586 6.19455 6.26403 6.32033 6.55802 6.69252 6.71718 6.74604 6.92617 7.53377 7.96913 8.00035 8.16476 8.58175 8.84715 9.41844 10.12569 11.01685 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.006662 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.765376 B = 4202.085877 C = 5085.156825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 1.064 2.936 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.285 1.285 7 C -0.327 4.327 8 H 0.069 0.931 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.045 0.955 15 C 0.113 3.887 16 N -0.690 5.690 17 C 0.550 3.450 18 O -0.553 6.553 19 C -0.079 4.079 20 C -0.130 4.130 21 C 0.096 3.904 22 N -0.475 5.475 23 C 0.088 3.912 24 C -0.121 4.121 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.821 -6.619 -3.179 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.896 3.104 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.454 4.454 8 H 0.087 0.913 9 N -0.327 5.327 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.036 3.964 14 H 0.063 0.937 15 C -0.012 4.012 16 N -0.343 5.343 17 C 0.336 3.664 18 O -0.432 6.432 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.060 4.060 22 N -0.185 5.185 23 C -0.069 4.069 24 C -0.142 4.142 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.423 -4.971 -3.963 8.356 hybrid contribution 0.601 -1.414 0.603 1.651 sum 6.024 -6.386 -3.360 9.400 Atomic orbital electron populations 1.70937 1.05783 1.29909 1.48790 1.25928 0.96391 1.00999 0.97806 0.83813 0.74339 0.75893 0.76340 1.22035 1.22792 1.21197 1.19746 0.84689 0.94922 1.46071 0.91343 1.44841 1.07571 1.23914 1.56412 1.22052 0.93595 0.92816 0.93562 1.22716 0.98156 0.98472 0.97519 1.22510 0.96398 0.99511 0.97705 1.21318 0.90249 0.93981 0.90894 0.93730 1.22012 0.84441 1.00272 0.94516 1.46080 1.14262 1.68349 1.05583 1.18171 0.87432 0.77946 0.82871 1.90703 1.37834 1.50009 1.64693 1.20486 0.94371 0.99613 0.94581 1.22467 0.93181 0.97627 1.01769 1.22735 0.97271 0.95822 0.90205 1.67536 1.32025 1.11600 1.07304 1.22723 0.87901 0.96008 1.00280 1.22266 0.99722 0.97975 0.94192 0.92692 0.95104 0.92358 0.91602 0.91381 0.91286 0.91409 0.91617 0.92810 0.74908 0.84114 0.82151 0.82337 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.51 13.70 55.49 0.76 -25.74 16 2 C -0.01 -0.24 5.45 -17.43 -0.10 -0.34 16 3 Si 1.06 26.01 24.73 -169.99 -4.20 21.81 16 4 H -0.29 -6.78 6.83 56.52 0.39 -6.39 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.29 -6.79 6.21 56.52 0.35 -6.44 16 7 C -0.33 -8.16 8.74 -15.06 -0.13 -8.29 16 8 H 0.07 1.72 6.24 -52.48 -0.33 1.39 16 9 N -0.60 -13.13 2.92 -162.57 -0.47 -13.61 16 10 C 0.10 2.11 4.73 -2.52 -0.01 2.10 16 11 C -0.13 -2.00 7.08 -24.58 -0.17 -2.18 16 12 C -0.12 -1.80 6.47 -24.90 -0.16 -1.96 16 13 C 0.14 2.57 3.38 -66.95 -0.23 2.34 16 14 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.11 2.07 5.22 -4.04 -0.02 2.05 16 16 N -0.69 -13.12 4.76 -61.15 -0.29 -13.41 16 17 C 0.55 10.71 7.80 -12.19 -0.10 10.61 16 18 O -0.55 -11.94 16.43 5.36 0.09 -11.85 16 19 C -0.08 -1.36 5.91 -104.64 -0.62 -1.98 16 20 C -0.13 -2.07 9.62 -39.02 -0.38 -2.45 16 21 C 0.10 1.42 11.17 -17.59 -0.20 1.22 16 22 N -0.47 -7.16 10.34 -13.30 -0.14 -7.30 16 23 C 0.09 1.19 11.17 -17.59 -0.20 0.99 16 24 C -0.12 -1.82 9.68 -39.02 -0.38 -2.20 16 25 H 0.26 7.41 8.73 -40.82 -0.36 7.06 16 26 H 0.03 0.66 5.24 -51.93 -0.27 0.38 16 27 H 0.06 1.25 6.90 -51.93 -0.36 0.89 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.97 7.84 -51.94 -0.41 0.56 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.41 7.78 3.76 -40.82 -0.15 7.63 16 35 H 0.14 2.22 6.47 -52.49 -0.34 1.88 16 36 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.14 2.02 7.74 -52.49 -0.41 1.61 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -31.14 307.26 -7.17 -38.31 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.86 Total: 7.23 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.68 Total: -0.07 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.14 Total: -60.06 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.20 Total: 21.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.14 -7.17 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027721461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.216 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds