Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48501 * 109.46904 * 90.00315 * 3 2 1 5 5 H 1.48498 * 109.47253 * 330.00636 * 3 2 1 6 6 H 1.48501 * 109.47115 * 210.00247 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99826 * 19.97435 * 7 2 1 9 9 N 1.36935 * 120.00325 * 199.97027 * 7 2 1 10 10 C 1.47427 * 125.64394 * 20.93410 * 9 7 2 11 11 C 1.54916 * 104.83001 * 155.83138 * 10 9 7 12 12 C 1.55161 * 101.58081 * 37.01141 * 11 10 9 13 13 C 1.47023 * 125.65109 * 200.62069 * 9 7 2 14 14 H 1.09001 * 109.88351 * 300.51776 * 13 9 7 15 15 C 1.53009 * 109.87902 * 61.68145 * 13 9 7 16 16 N 1.46496 * 109.47270 * 300.82311 * 15 13 9 17 17 C 1.34776 * 119.99798 * 173.60036 * 16 15 13 18 18 O 1.21508 * 120.00015 * 359.97438 * 17 16 15 19 19 C 1.48149 * 119.99430 * 179.97438 * 17 16 15 20 20 C 1.39820 * 120.92740 * 359.71829 * 19 17 16 21 21 C 1.38147 * 118.99715 * 179.75391 * 20 19 17 22 22 N 1.31812 * 120.90320 * 0.53608 * 21 20 19 23 23 C 1.31816 * 122.04287 * 359.73629 * 22 21 20 24 24 C 1.38142 * 120.89879 * 359.97438 * 23 22 21 25 25 H 0.96996 * 120.00155 * 174.90750 * 1 2 3 26 26 H 1.08999 * 110.36652 * 274.66706 * 10 9 7 27 27 H 1.09000 * 110.36478 * 36.99546 * 10 9 7 28 28 H 1.09001 * 111.00190 * 155.08302 * 11 10 9 29 29 H 1.08996 * 111.00234 * 278.89827 * 11 10 9 30 30 H 1.08989 * 110.72217 * 82.85828 * 12 11 10 31 31 H 1.09002 * 110.71921 * 205.96112 * 12 11 10 32 32 H 1.09002 * 109.46836 * 60.82621 * 15 13 9 33 33 H 1.08994 * 109.46617 * 180.82146 * 15 13 9 34 34 H 0.97007 * 119.99587 * 353.60220 * 16 15 13 35 35 H 1.07994 * 120.49600 * 0.02562 * 20 19 17 36 36 H 1.08004 * 119.54775 * 180.27438 * 21 20 19 37 37 H 1.08004 * 119.54844 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.50043 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4401 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.5189 -2.1092 -0.3205 9 7 3.3178 -1.2380 0.4045 10 6 3.9825 -0.2318 1.2524 11 6 5.1613 -0.9878 1.9149 12 6 5.6187 -1.9218 0.7634 13 6 4.2896 -2.2897 0.0710 14 1 3.9334 -3.2530 0.4363 15 6 4.4940 -2.3478 -1.4442 16 7 3.2135 -2.6251 -2.0995 17 6 3.1238 -2.5939 -3.4439 18 8 4.1050 -2.3355 -4.1124 19 6 1.8289 -2.8749 -4.1065 20 6 0.6892 -3.1802 -3.3564 21 6 -0.4990 -3.4304 -4.0153 22 7 -0.5639 -3.3946 -5.3313 23 6 0.4876 -3.1164 -6.0760 24 6 1.7140 -2.8478 -5.4998 25 1 -0.4850 -0.8367 -0.0746 26 1 4.3547 0.5917 0.6430 27 1 3.2943 0.1382 2.0123 28 1 5.9570 -0.2989 2.1986 29 1 4.8215 -1.5645 2.7750 30 1 6.2813 -1.3933 0.0782 31 1 6.1068 -2.8122 1.1599 32 1 4.8824 -1.3917 -1.7953 33 1 5.2042 -3.1389 -1.6849 34 1 2.4301 -2.8310 -1.5657 35 1 0.7360 -3.2154 -2.2781 36 1 -1.3859 -3.6627 -3.4444 37 1 0.3889 -3.0984 -7.1514 38 1 2.5712 -2.6203 -6.1161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027721461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = 5.463139 kcal Electronic energy + Delta-G solvation = -21583.735588 eV Core-core repulsion = 18425.958375 eV Total energy + Delta-G solvation = -3157.777213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63578 -40.30785 -39.35128 -35.70051 -34.79381 -33.75842 -32.30760 -31.63867 -30.83365 -26.95090 -25.84899 -24.83050 -24.29455 -22.67132 -21.58115 -21.08372 -19.80984 -18.82803 -17.75032 -17.31748 -16.88551 -16.66127 -16.41138 -16.24853 -16.08358 -15.45857 -15.12569 -14.87973 -14.85221 -14.51531 -14.22934 -13.88499 -13.30522 -13.01163 -12.80161 -12.72804 -12.66564 -12.16748 -11.99270 -11.62089 -11.43037 -11.32467 -11.16691 -11.02714 -10.66826 -10.59225 -10.24932 -10.04340 -9.09189 -8.48277 -5.42647 -0.38812 0.04340 1.37447 1.49784 1.63240 1.77073 2.13070 2.50700 2.80487 3.15764 3.33927 3.43992 3.51505 3.74884 3.85161 3.90256 3.96504 4.02473 4.15125 4.31293 4.40230 4.47287 4.59203 4.71397 4.74147 4.76781 4.80518 5.00199 5.01050 5.02627 5.13822 5.26521 5.42296 5.46597 5.55565 5.65247 6.21424 6.44941 6.82124 6.85994 7.05751 7.51197 8.20798 8.96081 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.006662 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.765376 B = 4202.085877 C = 5085.156825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.063 4.063 3 Si 1.092 2.908 4 H -0.276 1.276 5 H -0.318 1.318 6 H -0.279 1.279 7 C -0.294 4.294 8 H 0.062 0.938 9 N -0.620 5.620 10 C 0.091 3.909 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.052 0.948 15 C 0.114 3.886 16 N -0.694 5.694 17 C 0.546 3.454 18 O -0.579 6.579 19 C -0.102 4.102 20 C -0.139 4.139 21 C 0.095 3.905 22 N -0.484 5.484 23 C 0.098 3.902 24 C -0.123 4.123 25 H 0.254 0.746 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.409 0.591 35 H 0.135 0.865 36 H 0.183 0.817 37 H 0.199 0.801 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 -7.582 -3.196 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.922 3.078 4 H -0.202 1.202 5 H -0.247 1.247 6 H -0.205 1.205 7 C -0.423 4.423 8 H 0.080 0.920 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.345 5.345 17 C 0.333 3.667 18 O -0.461 6.461 19 C -0.114 4.114 20 C -0.160 4.160 21 C -0.061 4.061 22 N -0.194 5.194 23 C -0.059 4.059 24 C -0.144 4.144 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.200 0.800 37 H 0.216 0.784 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.143 -5.956 -3.948 10.104 hybrid contribution 0.127 -1.220 0.563 1.349 sum 7.270 -7.176 -3.385 10.762 Atomic orbital electron populations 1.70993 1.06802 1.29422 1.52940 1.26607 0.96521 1.03363 0.99455 0.83430 0.73557 0.73754 0.77049 1.20245 1.24737 1.20495 1.19793 0.86092 0.94095 1.42290 0.92020 1.45037 1.07406 1.25153 1.57005 1.22180 0.95035 0.92991 0.93100 1.22680 0.96730 0.98575 0.97550 1.22548 0.94537 1.00933 0.97150 1.21542 0.91327 0.92964 0.90893 0.92990 1.22035 0.84524 0.99950 0.94606 1.46160 1.14557 1.68114 1.05713 1.18543 0.88029 0.77267 0.82879 1.90671 1.38919 1.51406 1.65129 1.20507 0.93673 1.01435 0.95735 1.22459 0.93543 0.98422 1.01535 1.23089 0.97487 0.95026 0.90487 1.67646 1.32566 1.11836 1.07356 1.23336 0.86715 0.93881 1.01972 1.22473 1.00829 0.97715 0.93340 0.93621 0.95901 0.94218 0.88605 0.90503 0.90457 0.87839 0.93805 0.90457 0.75090 0.84732 0.79971 0.78398 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.25 13.70 21.65 0.30 -56.96 16 2 C -0.06 -3.51 5.45 84.86 0.46 -3.05 16 3 Si 1.09 53.46 24.73 68.60 1.70 55.16 16 4 H -0.28 -12.55 6.83 99.48 0.68 -11.87 16 5 H -0.32 -16.37 7.11 99.48 0.71 -15.66 16 6 H -0.28 -13.10 6.21 99.48 0.62 -12.48 16 7 C -0.29 -14.77 8.74 84.03 0.73 -14.03 16 8 H 0.06 3.15 6.24 -2.91 -0.02 3.13 16 9 N -0.62 -26.45 2.92 -668.24 -1.95 -28.40 16 10 C 0.09 3.54 4.73 86.86 0.41 3.95 16 11 C -0.12 -3.16 7.08 31.99 0.23 -2.94 16 12 C -0.11 -2.86 6.47 31.78 0.21 -2.65 16 13 C 0.14 4.68 3.38 45.34 0.15 4.84 16 14 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 15 C 0.11 4.02 5.22 86.38 0.45 4.47 16 16 N -0.69 -26.33 4.76 -465.69 -2.22 -28.54 16 17 C 0.55 21.36 7.80 86.88 0.68 22.03 16 18 O -0.58 -25.05 16.43 -3.74 -0.06 -25.11 16 19 C -0.10 -3.52 5.91 -19.88 -0.12 -3.64 16 20 C -0.14 -4.47 9.62 22.63 0.22 -4.25 16 21 C 0.10 2.73 11.17 84.67 0.95 3.68 16 22 N -0.48 -13.79 10.34 -196.01 -2.03 -15.81 16 23 C 0.10 2.44 11.17 84.67 0.95 3.39 16 24 C -0.12 -3.57 9.68 22.63 0.22 -3.35 16 25 H 0.25 14.92 8.73 -92.71 -0.81 14.11 16 26 H 0.02 0.94 5.24 -2.39 -0.01 0.93 16 27 H 0.04 1.67 6.90 -2.39 -0.02 1.65 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 1.86 7.84 -2.39 -0.02 1.84 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.41 15.67 3.76 -92.70 -0.35 15.33 16 35 H 0.13 4.40 6.47 -2.91 -0.02 4.38 16 36 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.20 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.15 4.11 7.74 -2.91 -0.02 4.09 16 Total: -1.00 -68.48 307.26 1.85 -66.63 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.58 Total: 24.60 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.53 Total: 8.44 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.89 Total: -129.71 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.70 Total: 55.16 kcal Total: -68.48 1.85 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027721461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.096 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds