Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 300.00451 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00340 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21551 * 120.00532 * 0.02562 * 16 15 14 18 18 C 1.47845 * 119.99558 * 179.97438 * 16 15 14 19 19 C 1.40025 * 120.55971 * 179.72697 * 18 16 15 20 20 C 1.38357 * 118.28992 * 179.73769 * 19 18 16 21 21 C 1.38351 * 119.29994 * 0.53997 * 20 19 18 22 22 N 1.31926 * 121.08344 * 359.72030 * 21 20 19 23 23 C 1.31694 * 121.87717 * 0.02562 * 22 21 20 24 24 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 25 25 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 27 27 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 28 28 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 29 29 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 30 30 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 31 31 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 32 32 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 33 33 H 1.07999 * 120.85303 * 359.97438 * 19 18 16 34 34 H 1.07997 * 120.34952 * 180.28298 * 20 19 18 35 35 H 1.07998 * 119.45842 * 179.70030 * 21 20 19 36 36 H 1.08005 * 119.71858 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.88206 * 59.48273 * 24 9 7 38 38 H 1.09007 * 109.88177 * 298.32145 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1756 -8.1699 2.0144 18 6 3.6586 -8.6875 0.2844 19 6 4.1510 -9.8317 0.9239 20 6 5.1220 -10.5769 0.2788 21 6 5.5791 -10.1655 -0.9605 22 7 5.1005 -9.0796 -1.5369 23 6 4.1725 -8.3403 -0.9654 24 6 1.9319 -3.7274 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5290 -2.4860 -1.0162 27 1 -0.5991 -1.7588 0.6182 28 1 -1.3585 -4.3328 0.2810 29 1 -0.3505 -3.8984 1.7017 30 1 1.4902 -5.5610 1.8930 31 1 0.2283 -6.5362 1.1025 32 1 2.5066 -6.5062 -0.5666 33 1 3.7796 -10.1271 1.8941 34 1 5.5218 -11.4680 0.7397 35 1 6.3405 -10.7425 -1.4641 36 1 3.8053 -7.4582 -1.4690 37 1 2.5596 -3.8509 0.8809 38 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028361254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = 24.453991 kcal Electronic energy + Delta-G solvation = -20380.222280 eV Core-core repulsion = 17223.268573 eV Total energy + Delta-G solvation = -3156.953707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79763 -39.19293 -37.64210 -34.82293 -32.84622 -32.70296 -31.70277 -29.75970 -28.27498 -25.84450 -24.68075 -23.88038 -23.12166 -20.97230 -20.06845 -19.75973 -18.21085 -17.12681 -16.78238 -16.69781 -15.74331 -15.37254 -15.13139 -14.76848 -14.59035 -13.97025 -13.77885 -13.56627 -13.37566 -12.84137 -12.55871 -12.50870 -11.80477 -11.75085 -11.53386 -10.96702 -10.83139 -10.56215 -10.31676 -10.25402 -10.10067 -10.02022 -9.85067 -9.69613 -9.57772 -9.52558 -9.05050 -8.66789 -6.85148 -5.67100 -3.08812 0.34655 0.87334 2.70454 3.04330 3.38985 3.44579 3.47034 3.58321 3.97105 4.42747 4.47155 4.50364 4.59101 4.69710 5.02861 5.07286 5.20400 5.26579 5.36790 5.50780 5.66005 5.68521 5.75242 5.84707 6.02467 6.06806 6.19444 6.31674 6.33975 6.52627 6.55862 6.68458 6.87479 7.39259 7.49475 7.51453 7.61708 7.83935 8.07110 8.34654 9.20579 9.81496 10.45939 11.37010 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.003430 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.604744 B = 8161.727485 C = 8790.349476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.560 3.440 17 O -0.538 6.538 18 C -0.184 4.184 19 C -0.018 4.018 20 C -0.181 4.181 21 C 0.118 3.882 22 N -0.487 5.487 23 C 0.135 3.865 24 C 0.141 3.859 25 H 0.252 0.748 26 H 0.012 0.988 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.024 0.976 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -19.925 -0.952 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.368 5.368 16 C 0.346 3.654 17 O -0.416 6.416 18 C -0.189 4.189 19 C -0.045 4.045 20 C -0.201 4.201 21 C -0.039 4.039 22 N -0.195 5.195 23 C -0.023 4.023 24 C 0.015 3.985 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.042 0.958 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.419 -19.640 -0.989 20.686 hybrid contribution 0.356 0.697 0.285 0.833 sum 6.774 -18.944 -0.704 20.131 Atomic orbital electron populations 1.69807 1.04889 1.24682 1.57707 1.24793 0.95743 0.97750 1.02426 0.85997 0.78659 0.83580 0.77259 1.20528 1.21744 1.21715 1.19127 0.90539 0.82475 1.42958 0.90468 1.44523 1.01996 0.99721 1.86848 1.21946 0.84656 0.92476 0.98227 1.23008 0.95479 0.98585 1.00349 1.22461 0.98442 0.93943 0.98653 0.90478 1.21534 0.89948 0.90992 0.96620 1.46022 1.41609 1.26014 1.23158 1.18022 0.81634 0.80755 0.85037 1.90778 1.59254 1.71148 1.20457 1.21091 1.01123 0.98930 0.97752 1.21767 0.92208 0.91161 0.99353 1.22183 0.98949 1.01854 0.97076 1.23031 0.96525 0.92160 0.92138 1.67729 1.10553 1.05849 1.35377 1.23062 0.90973 0.97424 0.90858 1.21338 0.93429 0.86001 0.97761 0.93765 0.96959 0.87518 0.92068 0.91792 0.90906 0.91305 0.76380 0.83476 0.83986 0.82203 0.82232 0.95782 0.96353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.30 3.40 -170.04 -0.58 -15.88 16 10 C 0.15 3.61 5.89 -2.50 -0.01 3.60 16 11 C -0.13 -2.45 6.53 -24.58 -0.16 -2.61 16 12 C -0.12 -1.86 2.95 -88.79 -0.26 -2.12 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C 0.13 1.88 5.02 -4.04 -0.02 1.86 16 15 N -0.72 -8.95 5.43 -61.25 -0.33 -9.29 16 16 C 0.56 7.54 7.78 -12.33 -0.10 7.45 16 17 O -0.54 -9.01 16.42 5.32 0.09 -8.92 16 18 C -0.18 -2.04 5.89 -104.82 -0.62 -2.66 16 19 C -0.02 -0.18 9.72 -38.87 -0.38 -0.55 16 20 C -0.18 -1.32 10.10 -39.50 -0.40 -1.72 16 21 C 0.12 0.94 11.17 -17.47 -0.20 0.75 16 22 N -0.49 -5.09 10.35 -12.91 -0.13 -5.22 16 23 C 0.14 1.38 10.71 -17.13 -0.18 1.20 16 24 C 0.14 2.81 6.76 -3.07 -0.02 2.79 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.11 2.88 5.88 -51.93 -0.31 2.57 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.40 4.16 6.54 -40.82 -0.27 3.90 16 33 H 0.15 1.34 7.74 -52.49 -0.41 0.94 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.16 1.33 6.42 -52.48 -0.34 0.99 16 37 H 0.02 0.49 7.70 -51.93 -0.40 0.09 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -33.11 318.07 -8.27 -41.38 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.05 Total: 1.12 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.60 Total: 1.21 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.48 Total: -56.59 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.11 -8.27 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.836 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds