Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 300.00451 * 3 2 1 6 6 H 1.48501 * 109.46780 * 60.00340 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21551 * 120.00532 * 0.02562 * 16 15 14 18 18 C 1.47845 * 119.99558 * 179.97438 * 16 15 14 19 19 C 1.40025 * 120.55971 * 179.72697 * 18 16 15 20 20 C 1.38357 * 118.28992 * 179.73769 * 19 18 16 21 21 C 1.38351 * 119.29994 * 0.53997 * 20 19 18 22 22 N 1.31926 * 121.08344 * 359.72030 * 21 20 19 23 23 C 1.31694 * 121.87717 * 0.02562 * 22 21 20 24 24 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 25 25 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 27 27 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 28 28 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 29 29 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 30 30 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 31 31 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 32 32 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 33 33 H 1.07999 * 120.85303 * 359.97438 * 19 18 16 34 34 H 1.07997 * 120.34952 * 180.28298 * 20 19 18 35 35 H 1.07998 * 119.45842 * 179.70030 * 21 20 19 36 36 H 1.08005 * 119.71858 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.88206 * 59.48273 * 24 9 7 38 38 H 1.09007 * 109.88177 * 298.32145 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1756 -8.1699 2.0144 18 6 3.6586 -8.6875 0.2844 19 6 4.1510 -9.8317 0.9239 20 6 5.1220 -10.5769 0.2788 21 6 5.5791 -10.1655 -0.9605 22 7 5.1005 -9.0796 -1.5369 23 6 4.1725 -8.3403 -0.9654 24 6 1.9319 -3.7274 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5290 -2.4860 -1.0162 27 1 -0.5991 -1.7588 0.6182 28 1 -1.3585 -4.3328 0.2810 29 1 -0.3505 -3.8984 1.7017 30 1 1.4902 -5.5610 1.8930 31 1 0.2283 -6.5362 1.1025 32 1 2.5066 -6.5062 -0.5666 33 1 3.7796 -10.1271 1.8941 34 1 5.5218 -11.4680 0.7397 35 1 6.3405 -10.7425 -1.4641 36 1 3.8053 -7.4582 -1.4690 37 1 2.5596 -3.8509 0.8809 38 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028361254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = 1.861240 kcal Electronic energy + Delta-G solvation = -20381.201975 eV Core-core repulsion = 17223.268573 eV Total energy + Delta-G solvation = -3157.933403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62649 -40.19508 -39.17902 -36.16806 -34.42759 -33.54342 -32.65940 -31.45064 -29.82429 -27.42683 -25.97415 -24.77457 -24.22996 -22.27500 -21.60344 -21.14296 -19.21294 -18.76379 -17.83434 -17.56262 -16.99934 -16.67260 -16.36079 -16.09536 -15.76581 -15.47276 -14.84589 -14.54810 -14.28244 -14.20367 -14.11581 -13.55284 -13.40671 -13.19695 -13.11679 -12.81184 -12.70772 -11.98300 -11.93071 -11.82959 -11.61100 -11.43666 -11.22374 -10.98340 -10.74921 -10.48311 -10.34999 -10.06814 -8.87792 -7.77808 -5.21786 -0.39093 0.20007 1.46661 1.47255 1.57622 1.77871 2.04001 2.49361 2.84118 3.29787 3.32104 3.63037 3.68736 3.79606 3.80967 3.93665 3.97580 4.02540 4.08780 4.44320 4.44950 4.64737 4.66489 4.69952 4.79498 4.91269 5.00753 5.03994 5.11804 5.13568 5.28860 5.40211 5.48234 5.58239 5.66894 5.83254 6.32114 6.40776 6.83881 7.06677 7.11503 7.79261 8.42378 9.24270 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.003430 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.604744 B = 8161.727485 C = 8790.349476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.099 0.901 14 C 0.144 3.856 15 N -0.710 5.710 16 C 0.561 3.439 17 O -0.577 6.577 18 C -0.202 4.202 19 C -0.030 4.030 20 C -0.168 4.168 21 C 0.119 3.881 22 N -0.511 5.511 23 C 0.132 3.868 24 C 0.136 3.864 25 H 0.247 0.753 26 H -0.009 1.009 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.172 0.828 37 H 0.020 0.980 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 -21.935 -1.538 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.114 4.114 13 H 0.117 0.883 14 C 0.020 3.980 15 N -0.361 5.361 16 C 0.349 3.651 17 O -0.458 6.458 18 C -0.207 4.207 19 C -0.056 4.056 20 C -0.188 4.188 21 C -0.037 4.037 22 N -0.219 5.219 23 C -0.026 4.026 24 C 0.011 3.989 25 H 0.057 0.943 26 H 0.009 0.991 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.249 0.751 33 H 0.165 0.835 34 H 0.195 0.805 35 H 0.210 0.790 36 H 0.189 0.811 37 H 0.038 0.962 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.868 -21.675 -1.600 23.114 hybrid contribution -0.014 1.243 0.448 1.322 sum 7.853 -20.431 -1.153 21.919 Atomic orbital electron populations 1.70062 1.06154 1.24924 1.58704 1.25624 0.96659 1.00952 1.02803 0.84996 0.78077 0.79429 0.76748 1.19193 1.21843 1.21874 1.19486 0.90993 0.83914 1.42364 0.90292 1.44847 1.02875 1.00987 1.86811 1.21743 0.84008 0.94914 0.96669 1.22847 0.97795 0.95411 1.00055 1.22297 0.95755 0.93237 1.00084 0.88321 1.21273 0.90826 0.90522 0.95383 1.45895 1.41136 1.25590 1.23506 1.18364 0.81584 0.80672 0.84492 1.90753 1.60726 1.72160 1.22155 1.20950 1.01516 0.99689 0.98534 1.21966 0.92901 0.91138 0.99607 1.22526 0.97471 1.02238 0.96529 1.23660 0.96375 0.91382 0.92325 1.67787 1.11036 1.06989 1.36118 1.23214 0.90977 0.97895 0.90535 1.21523 0.94783 0.84720 0.97848 0.94350 0.99094 0.91172 0.89106 0.91866 0.92547 0.90186 0.75054 0.83549 0.80514 0.78967 0.81128 0.96189 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.64 10.09 21.65 0.22 -56.42 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 3 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -13.42 10.27 84.03 0.86 -12.56 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -32.16 3.40 -691.89 -2.35 -34.51 16 10 C 0.15 7.35 5.89 86.85 0.51 7.87 16 11 C -0.12 -4.29 6.53 31.98 0.21 -4.08 16 12 C -0.09 -2.88 2.95 -9.61 -0.03 -2.91 16 13 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 14 C 0.14 3.87 5.02 86.38 0.43 4.30 16 15 N -0.71 -16.70 5.43 -465.96 -2.53 -19.23 16 16 C 0.56 14.67 7.78 86.79 0.68 15.34 16 17 O -0.58 -19.15 16.42 -3.88 -0.06 -19.22 16 18 C -0.20 -4.24 5.89 -19.99 -0.12 -4.36 16 19 C -0.03 -0.52 9.72 22.73 0.22 -0.30 16 20 C -0.17 -1.95 10.10 22.33 0.23 -1.72 16 21 C 0.12 1.53 11.17 84.71 0.95 2.47 16 22 N -0.51 -9.57 10.35 -194.75 -2.01 -11.59 16 23 C 0.13 2.49 10.71 85.02 0.91 3.40 16 24 C 0.14 5.33 6.76 86.73 0.59 5.92 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 27 H 0.07 3.93 5.88 -2.39 -0.01 3.92 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 30 H 0.06 1.74 7.95 -2.38 -0.02 1.72 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.41 7.79 6.54 -92.71 -0.61 7.19 16 33 H 0.15 2.54 7.74 -2.91 -0.02 2.51 16 34 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.17 2.57 6.42 -2.91 -0.02 2.55 16 37 H 0.02 0.81 7.70 -2.39 -0.02 0.79 16 38 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -73.36 318.07 1.66 -71.70 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.47 Total: 11.40 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.90 Total: 9.96 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -6.67 Total: -121.74 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.36 1.66 -71.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.562 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds