Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00240 * 2 1 4 4 H 1.48504 * 109.47161 * 264.67249 * 3 2 1 5 5 H 1.48502 * 109.46865 * 24.66955 * 3 2 1 6 6 H 1.48503 * 109.47477 * 144.66978 * 3 2 1 7 7 C 1.38810 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00357 * 336.24388 * 7 2 1 9 9 N 1.36942 * 120.00409 * 156.24406 * 7 2 1 10 10 C 1.47415 * 125.65126 * 162.05395 * 9 7 2 11 11 C 1.54913 * 104.83283 * 155.90640 * 10 9 7 12 12 C 1.55156 * 101.58008 * 37.01047 * 11 10 9 13 13 H 1.09000 * 110.72402 * 83.04313 * 12 11 10 14 14 C 1.53010 * 110.71885 * 206.13728 * 12 11 10 15 15 N 1.46496 * 109.47126 * 182.55896 * 14 12 11 16 16 C 1.34770 * 119.99867 * 180.02562 * 15 14 12 17 17 O 1.21551 * 120.00350 * 359.97438 * 16 15 14 18 18 C 1.47839 * 120.00001 * 179.97438 * 16 15 14 19 19 C 1.40031 * 120.56063 * 179.97438 * 18 16 15 20 20 C 1.38353 * 118.29140 * 180.25150 * 19 18 16 21 21 C 1.38363 * 119.29907 * 359.45790 * 20 19 18 22 22 N 1.31921 * 121.07929 * 0.55740 * 21 20 19 23 23 C 1.31699 * 121.88243 * 359.71901 * 22 21 20 24 24 C 1.47325 * 125.60996 * 342.27498 * 9 7 2 25 25 H 0.97000 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.08993 * 110.37217 * 37.06627 * 10 9 7 27 27 H 1.09007 * 110.46088 * 274.78866 * 10 9 7 28 28 H 1.08994 * 111.00323 * 278.93157 * 11 10 9 29 29 H 1.08999 * 111.03585 * 155.09599 * 11 10 9 30 30 H 1.08999 * 109.47127 * 62.55353 * 14 12 11 31 31 H 1.09000 * 109.46651 * 302.55507 * 14 12 11 32 32 H 0.97004 * 119.99991 * 359.97438 * 15 14 12 33 33 H 1.07999 * 120.85543 * 359.97438 * 19 18 16 34 34 H 1.07997 * 120.35439 * 179.72450 * 20 19 18 35 35 H 1.08005 * 119.45740 * 180.27590 * 21 20 19 36 36 H 1.07991 * 119.71775 * 180.02562 * 23 22 21 37 37 H 1.08998 * 110.06247 * 61.67810 * 24 9 7 38 38 H 1.09001 * 109.84628 * 300.41854 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3958 2.6825 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2021 0.0005 8 1 1.5388 -2.0977 0.3777 9 7 3.2926 -1.2527 -0.4772 10 6 4.2677 -2.3252 -0.2091 11 6 5.2608 -2.2642 -1.3964 12 6 5.3571 -0.7355 -1.6436 13 1 6.0753 -0.2790 -0.9625 14 6 5.7332 -0.4450 -3.0980 15 7 5.8762 1.0008 -3.2860 16 6 6.2055 1.4937 -4.4964 17 8 6.3843 0.7386 -5.4320 18 6 6.3493 2.9527 -4.6862 19 6 6.6915 3.4775 -5.9386 20 6 6.8187 4.8496 -6.0621 21 6 6.5947 5.6525 -4.9578 22 7 6.2733 5.1300 -3.7899 23 6 6.1457 3.8302 -3.6207 24 6 3.9269 -0.2413 -1.3405 25 1 -0.4850 0.8400 -0.0004 26 1 3.7685 -3.2937 -0.1816 27 1 4.7882 -2.1408 0.7308 28 1 4.8576 -2.7767 -2.2697 29 1 6.2304 -2.6765 -1.1171 30 1 4.9515 -0.8216 -3.7577 31 1 6.6766 -0.9372 -3.3345 32 1 5.7331 1.6035 -2.5395 33 1 6.8564 2.8275 -6.7852 34 1 7.0858 5.2896 -7.0115 35 1 6.6889 6.7243 -5.0524 36 1 5.8809 3.4402 -2.6492 37 1 3.9676 0.7181 -0.8247 38 1 3.3644 -0.1419 -2.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028361256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 31.249254 kcal Electronic energy + Delta-G solvation = -20827.290430 eV Core-core repulsion = 17670.631388 eV Total energy + Delta-G solvation = -3156.659043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79397 -39.25024 -37.97473 -34.89146 -32.83253 -32.70453 -31.82656 -30.31801 -28.71928 -26.11057 -24.62257 -23.86675 -23.25863 -21.01025 -20.34897 -20.11683 -18.25125 -17.10350 -16.94334 -16.67852 -16.20900 -15.43117 -15.24252 -15.12307 -14.43883 -14.03009 -13.72135 -13.54269 -13.36158 -13.29137 -12.82292 -12.52730 -12.49942 -12.00455 -11.61180 -11.34396 -11.00388 -10.78778 -10.60510 -10.32812 -10.24961 -10.23271 -9.90309 -9.68366 -9.56090 -9.37415 -9.09157 -8.65359 -7.09576 -5.97235 -3.25721 0.36349 0.89727 2.69911 3.00825 3.28853 3.41939 3.47326 3.59760 3.99200 4.44296 4.51619 4.51722 4.59392 4.68314 4.79645 4.98309 5.01765 5.07843 5.21048 5.26934 5.41774 5.58328 5.70152 5.72376 5.76893 5.84524 5.98396 6.04180 6.21301 6.23136 6.28658 6.41522 6.55904 6.69463 6.75694 7.34776 7.54181 7.68360 8.03891 8.29079 8.81049 9.66719 10.15280 11.19356 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.005167 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.903978 B = 5417.623802 C = 6511.838755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.720 5.720 16 C 0.562 3.438 17 O -0.537 6.537 18 C -0.185 4.185 19 C -0.017 4.017 20 C -0.181 4.181 21 C 0.119 3.881 22 N -0.486 5.486 23 C 0.136 3.864 24 C 0.124 3.876 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.024 0.976 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.525 7.106 -9.723 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.137 4.137 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.371 5.371 16 C 0.348 3.652 17 O -0.415 6.415 18 C -0.190 4.190 19 C -0.044 4.044 20 C -0.201 4.201 21 C -0.037 4.037 22 N -0.195 5.195 23 C -0.023 4.023 24 C -0.001 4.001 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.041 0.959 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.246 7.169 -9.620 20.196 hybrid contribution 0.406 0.871 -0.218 0.985 sum 16.652 8.040 -9.838 20.946 Atomic orbital electron populations 1.69854 1.05547 1.26593 1.52960 1.24956 0.95139 0.97369 1.00274 0.86915 0.78996 0.84854 0.77491 1.21367 1.23155 1.20645 1.18678 0.85229 0.95684 1.37483 0.88909 1.44856 1.10895 1.22208 1.55735 1.21613 0.90137 0.93102 0.94453 1.22728 0.99543 0.93669 1.00023 1.22482 0.98328 0.98221 0.94668 0.90055 1.21489 1.01868 0.79176 0.96582 1.45991 1.70249 1.09403 1.11424 1.17994 0.77020 0.87199 0.82952 1.90771 1.50751 1.59478 1.40508 1.21063 1.06888 0.94690 0.96366 1.21754 0.90694 0.95354 0.96564 1.22186 1.02878 0.94011 1.00997 1.23050 0.92004 1.00904 0.87782 1.67728 1.12589 1.13688 1.25456 1.23052 0.92301 0.88674 0.98262 1.21772 0.90710 0.92836 0.94798 0.92696 0.93113 0.95743 0.90835 0.91165 0.90615 0.90989 0.76383 0.83416 0.83920 0.82136 0.82431 0.95921 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.97 55.49 0.78 -27.28 16 2 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 3 Si 0.89 22.48 24.39 -169.99 -4.15 18.33 16 4 H -0.29 -6.91 6.84 56.52 0.39 -6.52 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 7 C -0.24 -6.91 10.56 -15.06 -0.16 -7.07 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.61 -14.54 3.22 -169.83 -0.55 -15.09 16 10 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 11 C -0.12 -1.78 6.54 -24.58 -0.16 -1.94 16 12 C -0.12 -1.81 2.98 -88.78 -0.26 -2.07 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 1.85 5.00 -4.04 -0.02 1.83 16 15 N -0.72 -9.77 5.38 -61.25 -0.33 -10.10 16 16 C 0.56 8.06 7.78 -12.34 -0.10 7.96 16 17 O -0.54 -9.14 16.42 5.32 0.09 -9.05 16 18 C -0.18 -2.27 5.89 -104.82 -0.62 -2.89 16 19 C -0.02 -0.18 9.72 -38.87 -0.38 -0.56 16 20 C -0.18 -1.47 10.10 -39.49 -0.40 -1.87 16 21 C 0.12 1.08 11.17 -17.47 -0.20 0.88 16 22 N -0.49 -5.79 10.35 -12.91 -0.13 -5.92 16 23 C 0.14 1.61 10.71 -17.13 -0.18 1.43 16 24 C 0.12 2.58 4.55 -2.90 -0.01 2.57 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.92 6.47 -40.82 -0.26 4.66 16 33 H 0.15 1.43 7.74 -52.49 -0.41 1.02 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.16 1.66 6.42 -52.49 -0.34 1.32 16 37 H 0.02 0.51 3.55 -51.93 -0.18 0.33 16 38 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -34.45 313.35 -7.14 -41.59 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.97 Total: 1.52 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.60 Total: 1.28 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.23 Total: -58.39 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.15 Total: 18.33 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.45 -7.14 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.840 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds