Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00240 * 2 1 4 4 H 1.48504 * 109.47161 * 264.67249 * 3 2 1 5 5 H 1.48502 * 109.46865 * 24.66955 * 3 2 1 6 6 H 1.48503 * 109.47477 * 144.66978 * 3 2 1 7 7 C 1.38810 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00357 * 336.24388 * 7 2 1 9 9 N 1.36942 * 120.00409 * 156.24406 * 7 2 1 10 10 C 1.47415 * 125.65126 * 162.05395 * 9 7 2 11 11 C 1.54913 * 104.83283 * 155.90640 * 10 9 7 12 12 C 1.55156 * 101.58008 * 37.01047 * 11 10 9 13 13 H 1.09000 * 110.72402 * 83.04313 * 12 11 10 14 14 C 1.53010 * 110.71885 * 206.13728 * 12 11 10 15 15 N 1.46496 * 109.47126 * 182.55896 * 14 12 11 16 16 C 1.34770 * 119.99867 * 180.02562 * 15 14 12 17 17 O 1.21551 * 120.00350 * 359.97438 * 16 15 14 18 18 C 1.47839 * 120.00001 * 179.97438 * 16 15 14 19 19 C 1.40031 * 120.56063 * 179.97438 * 18 16 15 20 20 C 1.38353 * 118.29140 * 180.25150 * 19 18 16 21 21 C 1.38363 * 119.29907 * 359.45790 * 20 19 18 22 22 N 1.31921 * 121.07929 * 0.55740 * 21 20 19 23 23 C 1.31699 * 121.88243 * 359.71901 * 22 21 20 24 24 C 1.47325 * 125.60996 * 342.27498 * 9 7 2 25 25 H 0.97000 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.08993 * 110.37217 * 37.06627 * 10 9 7 27 27 H 1.09007 * 110.46088 * 274.78866 * 10 9 7 28 28 H 1.08994 * 111.00323 * 278.93157 * 11 10 9 29 29 H 1.08999 * 111.03585 * 155.09599 * 11 10 9 30 30 H 1.08999 * 109.47127 * 62.55353 * 14 12 11 31 31 H 1.09000 * 109.46651 * 302.55507 * 14 12 11 32 32 H 0.97004 * 119.99991 * 359.97438 * 15 14 12 33 33 H 1.07999 * 120.85543 * 359.97438 * 19 18 16 34 34 H 1.07997 * 120.35439 * 179.72450 * 20 19 18 35 35 H 1.08005 * 119.45740 * 180.27590 * 21 20 19 36 36 H 1.07991 * 119.71775 * 180.02562 * 23 22 21 37 37 H 1.08998 * 110.06247 * 61.67810 * 24 9 7 38 38 H 1.09001 * 109.84628 * 300.41854 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3958 2.6825 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2021 0.0005 8 1 1.5388 -2.0977 0.3777 9 7 3.2926 -1.2527 -0.4772 10 6 4.2677 -2.3252 -0.2091 11 6 5.2608 -2.2642 -1.3964 12 6 5.3571 -0.7355 -1.6436 13 1 6.0753 -0.2790 -0.9625 14 6 5.7332 -0.4450 -3.0980 15 7 5.8762 1.0008 -3.2860 16 6 6.2055 1.4937 -4.4964 17 8 6.3843 0.7386 -5.4320 18 6 6.3493 2.9527 -4.6862 19 6 6.6915 3.4775 -5.9386 20 6 6.8187 4.8496 -6.0621 21 6 6.5947 5.6525 -4.9578 22 7 6.2733 5.1300 -3.7899 23 6 6.1457 3.8302 -3.6207 24 6 3.9269 -0.2413 -1.3405 25 1 -0.4850 0.8400 -0.0004 26 1 3.7685 -3.2937 -0.1816 27 1 4.7882 -2.1408 0.7308 28 1 4.8576 -2.7767 -2.2697 29 1 6.2304 -2.6765 -1.1171 30 1 4.9515 -0.8216 -3.7577 31 1 6.6766 -0.9372 -3.3345 32 1 5.7331 1.6035 -2.5395 33 1 6.8564 2.8275 -6.7852 34 1 7.0858 5.2896 -7.0115 35 1 6.6889 6.7243 -5.0524 36 1 5.8809 3.4402 -2.6492 37 1 3.9676 0.7181 -0.8247 38 1 3.3644 -0.1419 -2.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028361256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 5.732540 kcal Electronic energy + Delta-G solvation = -20828.396918 eV Core-core repulsion = 17670.631388 eV Total energy + Delta-G solvation = -3157.765530 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68619 -40.30027 -39.39450 -36.19321 -34.56770 -33.60642 -32.91100 -31.84732 -30.16244 -27.57992 -25.96288 -24.88174 -24.35082 -22.29722 -21.81805 -21.36224 -19.24517 -18.94311 -17.96514 -17.76082 -17.53110 -16.60714 -16.42387 -16.18042 -15.73976 -15.41407 -15.12678 -14.81404 -14.60335 -14.26507 -14.21519 -14.16680 -13.48119 -13.30435 -13.16977 -13.02695 -12.67137 -12.41660 -12.14608 -11.85827 -11.60734 -11.37571 -11.23162 -11.03222 -10.77753 -10.53658 -10.40058 -10.12650 -9.09078 -8.21126 -5.45456 -0.44526 0.14923 1.24660 1.34742 1.45471 1.71961 1.99155 2.38802 2.78558 2.99241 3.22286 3.30881 3.59891 3.69461 3.75048 3.80097 3.84330 3.90293 3.98966 4.35056 4.40035 4.45683 4.54040 4.59089 4.63949 4.75761 4.84901 4.95724 5.02301 5.06253 5.09343 5.15360 5.27881 5.43634 5.53583 5.67054 6.07581 6.30832 6.74658 6.78434 6.98680 7.52403 8.08818 8.99224 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.005167 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.903978 B = 5417.623802 C = 6511.838755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.041 4.041 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.312 1.312 6 H -0.265 1.265 7 C -0.238 4.238 8 H 0.059 0.941 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.106 4.106 12 C -0.101 4.101 13 H 0.107 0.893 14 C 0.138 3.862 15 N -0.718 5.718 16 C 0.562 3.438 17 O -0.571 6.571 18 C -0.203 4.203 19 C -0.027 4.027 20 C -0.166 4.166 21 C 0.119 3.881 22 N -0.512 5.512 23 C 0.126 3.874 24 C 0.118 3.882 25 H 0.262 0.738 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.408 0.592 33 H 0.151 0.849 34 H 0.181 0.819 35 H 0.195 0.805 36 H 0.163 0.837 37 H 0.017 0.983 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.703 8.600 -10.690 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.236 4.236 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.241 1.241 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.145 4.145 12 C -0.120 4.120 13 H 0.126 0.874 14 C 0.015 3.985 15 N -0.369 5.369 16 C 0.350 3.650 17 O -0.451 6.451 18 C -0.208 4.208 19 C -0.054 4.054 20 C -0.185 4.185 21 C -0.038 4.038 22 N -0.221 5.221 23 C -0.032 4.032 24 C -0.007 4.007 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.244 0.756 33 H 0.169 0.831 34 H 0.198 0.802 35 H 0.212 0.788 36 H 0.180 0.820 37 H 0.034 0.966 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 19.478 8.649 -10.577 23.793 hybrid contribution -0.598 0.350 0.051 0.695 sum 18.881 9.000 -10.526 23.415 Atomic orbital electron populations 1.69991 1.07318 1.27242 1.55753 1.25644 0.95824 1.00953 1.01142 0.85864 0.77761 0.79946 0.78363 1.19664 1.24105 1.19047 1.18654 0.87375 0.94552 1.36112 0.92279 1.45014 1.10423 1.24258 1.56133 1.21887 0.90109 0.91270 0.96963 1.22705 1.00326 0.93359 0.98080 1.22410 0.95038 0.98559 0.95972 0.87445 1.21389 1.02248 0.79686 0.95187 1.45985 1.69864 1.09385 1.11641 1.18308 0.76162 0.87999 0.82527 1.90745 1.52486 1.60459 1.41454 1.20974 1.08901 0.93406 0.97555 1.21981 0.90682 0.96685 0.96009 1.22560 1.00877 0.92787 1.02306 1.23696 0.90331 1.02655 0.87078 1.67764 1.13663 1.13557 1.27128 1.23135 0.92660 0.88913 0.98468 1.21874 0.93688 0.92133 0.92991 0.92955 0.93674 0.94512 0.90776 0.86781 0.92499 0.88820 0.75592 0.83144 0.80188 0.78820 0.81954 0.96562 0.96199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.47 13.97 21.65 0.30 -61.17 16 2 C -0.04 -2.47 5.43 84.86 0.46 -2.00 16 3 Si 0.95 47.08 24.39 68.60 1.67 48.75 16 4 H -0.27 -12.50 6.84 99.48 0.68 -11.82 16 5 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 6 H -0.26 -12.31 6.87 99.48 0.68 -11.63 16 7 C -0.24 -13.89 10.56 84.03 0.89 -13.00 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.63 -29.89 3.22 -691.23 -2.22 -32.12 16 10 C 0.12 4.39 7.23 86.86 0.63 5.02 16 11 C -0.11 -2.76 6.54 31.99 0.21 -2.55 16 12 C -0.10 -2.78 2.98 -9.60 -0.03 -2.80 16 13 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 14 C 0.14 3.56 5.00 86.38 0.43 3.99 16 15 N -0.72 -18.25 5.38 -465.98 -2.51 -20.75 16 16 C 0.56 15.53 7.78 86.79 0.68 16.20 16 17 O -0.57 -19.04 16.42 -3.87 -0.06 -19.10 16 18 C -0.20 -4.73 5.89 -19.99 -0.12 -4.84 16 19 C -0.03 -0.51 9.72 22.73 0.22 -0.29 16 20 C -0.17 -2.15 10.10 22.33 0.23 -1.92 16 21 C 0.12 1.76 11.17 84.71 0.95 2.71 16 22 N -0.51 -11.12 10.35 -194.75 -2.01 -13.13 16 23 C 0.13 2.82 10.71 85.02 0.91 3.73 16 24 C 0.12 4.75 4.55 86.67 0.39 5.14 16 25 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.70 8.00 -2.39 -0.02 1.68 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.41 9.20 6.47 -92.71 -0.60 8.60 16 33 H 0.15 2.70 7.74 -2.91 -0.02 2.67 16 34 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.16 3.21 6.42 -2.92 -0.02 3.19 16 37 H 0.02 0.71 3.55 -2.39 -0.01 0.70 16 38 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 Total: -1.00 -77.77 313.35 1.43 -76.33 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.43 Total: 11.82 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.85 Total: 9.37 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -6.45 Total: -127.17 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.67 Total: 48.75 kcal Total: -77.77 1.43 -76.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.064 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds