Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48497 * 109.47563 * 240.00202 * 3 2 1 5 5 H 1.48504 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99925 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21507 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.48178 * 120.00079 * 179.97438 * 16 15 14 19 19 C 1.39301 * 119.72324 * 179.72256 * 18 16 15 20 20 C 1.38595 * 119.05991 * 179.77279 * 19 18 16 21 21 C 1.38628 * 118.48420 * 0.49221 * 20 19 18 22 22 C 1.38555 * 119.35428 * 359.75423 * 21 20 19 23 23 N 1.31530 * 120.90334 * 359.97438 * 22 21 20 24 24 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 25 25 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 27 27 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 28 28 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 29 29 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 30 30 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 31 31 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 32 32 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.47102 * 0.02562 * 19 18 16 34 34 H 1.07993 * 120.75913 * 180.24551 * 20 19 18 35 35 H 1.07998 * 120.32220 * 179.76946 * 21 20 19 36 36 H 1.08003 * 119.55061 * 180.02562 * 22 21 20 37 37 H 1.09002 * 110.36518 * 322.70049 * 24 9 7 38 38 H 1.08995 * 110.36673 * 84.91158 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9602 -8.5953 0.3052 18 6 3.9213 -8.4395 -0.9606 19 6 4.3050 -9.7447 -0.6611 20 6 5.4863 -10.2379 -1.1923 21 6 6.2482 -9.4045 -1.9966 22 6 5.8079 -8.1151 -2.2484 23 7 4.6797 -7.6743 -1.7357 24 6 1.9333 -3.7312 -0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5503 -2.0832 0.9095 27 1 -0.5617 -2.0533 -0.8759 28 1 -1.3017 -4.2523 -0.6628 29 1 -0.6290 -4.4190 0.9906 30 1 1.0780 -6.1265 0.9518 31 1 0.1986 -6.7069 -0.4828 32 1 2.8421 -6.0795 -1.2533 33 1 3.6887 -10.3650 -0.0272 34 1 5.8080 -11.2469 -0.9813 35 1 7.1757 -9.7570 -2.4230 36 1 6.3987 -7.4633 -2.8749 37 1 2.8303 -3.7416 -0.6198 38 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028362293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = 23.381928 kcal Electronic energy + Delta-G solvation = -20391.260232 eV Core-core repulsion = 17234.260037 eV Total energy + Delta-G solvation = -3157.000196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73908 -39.06928 -37.56586 -34.70141 -33.01100 -32.34705 -31.65736 -29.74367 -28.25845 -25.82658 -24.66391 -23.79304 -23.12248 -20.86644 -19.91446 -19.83096 -18.16530 -16.98844 -16.69642 -16.28943 -15.69117 -15.36315 -15.12705 -14.70138 -14.53729 -13.94590 -13.79655 -13.56619 -13.33496 -12.94587 -12.30571 -12.26262 -11.96393 -11.70371 -11.35918 -10.87790 -10.75533 -10.53907 -10.29008 -10.23563 -10.11440 -9.95730 -9.83103 -9.66165 -9.61088 -9.50975 -8.91804 -8.56782 -6.79816 -5.68116 -3.01431 0.40522 0.91222 2.65963 3.11722 3.42696 3.46669 3.48095 3.67823 3.96282 4.48874 4.52066 4.59204 4.67630 4.76068 5.10484 5.16445 5.28098 5.41952 5.46180 5.57115 5.65477 5.72175 5.78245 5.93248 6.06774 6.09150 6.26394 6.38067 6.46284 6.55498 6.57169 6.72467 6.95618 7.36916 7.58928 7.66524 7.67271 7.85621 8.19152 8.29476 9.25487 9.85859 10.52234 11.43681 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.003593 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.621737 B = 7791.166870 C = 8723.566834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.130 3.870 15 N -0.701 5.701 16 C 0.566 3.434 17 O -0.540 6.540 18 C 0.082 3.918 19 C -0.114 4.114 20 C -0.083 4.083 21 C -0.154 4.154 22 C 0.099 3.901 23 N -0.457 5.457 24 C 0.142 3.858 25 H 0.252 0.748 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.037 0.963 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.375 -19.561 -4.490 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.007 3.993 15 N -0.352 5.352 16 C 0.350 3.650 17 O -0.417 6.417 18 C -0.056 4.056 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.174 4.174 22 C -0.061 4.061 23 N -0.169 5.169 24 C 0.016 3.984 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.055 0.945 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.476 -18.918 -4.132 21.138 hybrid contribution 1.106 0.310 -0.126 1.155 sum 9.582 -18.608 -4.258 21.359 Atomic orbital electron populations 1.69957 1.04875 1.25093 1.57112 1.24802 0.95726 0.97655 1.02323 0.86194 0.78438 0.83213 0.77882 1.21172 1.21617 1.21208 1.19024 0.90412 0.82471 1.43782 0.90529 1.44478 1.01738 0.99866 1.87186 1.21146 0.84332 0.88146 1.01090 1.22862 0.95412 0.99405 0.99661 1.22616 0.98644 0.91870 1.00636 0.90101 1.21487 0.84965 0.93989 0.98868 1.45944 1.24807 1.13246 1.51172 1.17878 0.84167 0.82245 0.80675 1.90772 1.53884 1.58894 1.38154 1.21263 0.95477 0.92053 0.96795 1.22152 0.96839 0.95629 0.98878 1.21640 0.93678 1.00385 0.95211 1.22393 1.00994 0.95365 0.98660 1.22857 0.92242 0.94120 0.96840 1.67599 1.05315 1.36639 1.07301 1.21568 0.94026 0.86083 0.96768 0.93737 0.93930 0.93526 0.91964 0.92189 0.91096 0.91406 0.75058 0.83409 0.84106 0.84238 0.81907 0.94493 0.96352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.31 55.49 0.57 -26.83 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -15.71 3.39 -170.05 -0.58 -16.28 16 10 C 0.18 4.35 5.37 -3.06 -0.02 4.33 16 11 C -0.13 -2.49 6.42 -24.90 -0.16 -2.65 16 12 C -0.12 -2.03 3.11 -88.46 -0.27 -2.30 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 14 C 0.13 1.97 5.12 -4.05 -0.02 1.95 16 15 N -0.70 -10.18 5.40 -61.15 -0.33 -10.51 16 16 C 0.57 8.46 7.81 -12.18 -0.10 8.37 16 17 O -0.54 -9.32 16.32 5.36 0.09 -9.23 16 18 C 0.08 1.04 6.75 -83.01 -0.56 0.48 16 19 C -0.11 -1.17 9.63 -39.05 -0.38 -1.54 16 20 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 21 C -0.15 -1.04 10.11 -39.32 -0.40 -1.44 16 22 C 0.10 0.86 11.18 -17.56 -0.20 0.66 16 23 N -0.46 -5.43 9.54 -9.80 -0.09 -5.52 16 24 C 0.14 2.95 6.41 -2.52 -0.02 2.93 16 25 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 27 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.41 5.75 7.67 -40.82 -0.31 5.43 16 33 H 0.15 1.44 7.64 -52.49 -0.40 1.04 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -33.28 320.91 -8.54 -41.82 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.25 Total: 1.62 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.76 Total: 2.81 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.43 Total: -59.14 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.28 -8.54 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028362293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.200 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds