Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48497 * 109.47563 * 240.00202 * 3 2 1 5 5 H 1.48504 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99925 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21507 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.48178 * 120.00079 * 179.97438 * 16 15 14 19 19 C 1.39301 * 119.72324 * 179.72256 * 18 16 15 20 20 C 1.38595 * 119.05991 * 179.77279 * 19 18 16 21 21 C 1.38628 * 118.48420 * 0.49221 * 20 19 18 22 22 C 1.38555 * 119.35428 * 359.75423 * 21 20 19 23 23 N 1.31530 * 120.90334 * 359.97438 * 22 21 20 24 24 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 25 25 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 27 27 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 28 28 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 29 29 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 30 30 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 31 31 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 32 32 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.47102 * 0.02562 * 19 18 16 34 34 H 1.07993 * 120.75913 * 180.24551 * 20 19 18 35 35 H 1.07998 * 120.32220 * 179.76946 * 21 20 19 36 36 H 1.08003 * 119.55061 * 180.02562 * 22 21 20 37 37 H 1.09002 * 110.36518 * 322.70049 * 24 9 7 38 38 H 1.08995 * 110.36673 * 84.91158 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9602 -8.5953 0.3052 18 6 3.9213 -8.4395 -0.9606 19 6 4.3050 -9.7447 -0.6611 20 6 5.4863 -10.2379 -1.1923 21 6 6.2482 -9.4045 -1.9966 22 6 5.8079 -8.1151 -2.2484 23 7 4.6797 -7.6743 -1.7357 24 6 1.9333 -3.7312 -0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5503 -2.0832 0.9095 27 1 -0.5617 -2.0533 -0.8759 28 1 -1.3017 -4.2523 -0.6628 29 1 -0.6290 -4.4190 0.9906 30 1 1.0780 -6.1265 0.9518 31 1 0.1986 -6.7069 -0.4828 32 1 2.8421 -6.0795 -1.2533 33 1 3.6887 -10.3650 -0.0272 34 1 5.8080 -11.2469 -0.9813 35 1 7.1757 -9.7570 -2.4230 36 1 6.3987 -7.4633 -2.8749 37 1 2.8303 -3.7416 -0.6198 38 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028362293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = 0.438799 kcal Electronic energy + Delta-G solvation = -20392.255121 eV Core-core repulsion = 17234.260037 eV Total energy + Delta-G solvation = -3157.995084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59061 -40.14453 -39.16921 -36.12475 -34.41205 -33.48688 -32.47842 -31.52965 -29.89004 -27.45093 -26.03602 -24.69056 -24.23940 -22.20385 -21.55600 -21.27092 -19.26730 -18.68803 -17.77765 -17.21636 -16.77564 -16.65285 -16.40763 -16.13662 -15.83501 -15.43656 -14.95621 -14.70849 -14.37403 -14.04924 -13.95967 -13.82082 -13.41180 -13.03273 -12.88597 -12.77919 -12.61122 -12.06551 -11.97742 -11.85782 -11.55720 -11.47769 -11.35241 -10.93757 -10.69784 -10.51882 -10.31686 -10.02239 -8.90156 -7.84789 -5.20651 -0.34366 0.28234 1.45649 1.49404 1.55673 1.70205 2.05947 2.49933 2.89581 3.14786 3.33021 3.58953 3.75844 3.88790 3.99618 4.01250 4.02616 4.07826 4.12672 4.42617 4.51599 4.61276 4.68624 4.76515 4.79649 4.89721 5.04265 5.07124 5.09336 5.17871 5.30968 5.42461 5.44900 5.66438 5.67855 5.77605 6.20151 6.37369 6.80809 7.09373 7.10570 7.77845 8.42536 9.25571 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.003593 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.621737 B = 7791.166870 C = 8723.566834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.087 0.913 14 C 0.141 3.859 15 N -0.701 5.701 16 C 0.564 3.436 17 O -0.571 6.571 18 C 0.050 3.950 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.135 4.135 22 C 0.086 3.914 23 N -0.483 5.483 24 C 0.139 3.861 25 H 0.247 0.753 26 H 0.005 0.995 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.043 0.957 38 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.654 -21.401 -5.480 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.351 5.351 16 C 0.350 3.650 17 O -0.451 6.451 18 C -0.087 4.087 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.154 4.154 22 C -0.074 4.074 23 N -0.196 5.196 24 C 0.014 3.986 25 H 0.056 0.944 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.163 0.837 34 H 0.194 0.806 35 H 0.198 0.802 36 H 0.205 0.795 37 H 0.062 0.938 38 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.779 -20.786 -5.128 23.969 hybrid contribution 0.520 0.819 0.153 0.982 sum 11.299 -19.966 -4.975 23.475 Atomic orbital electron populations 1.70189 1.06324 1.25360 1.58190 1.25683 0.96660 1.01111 1.02548 0.85127 0.77131 0.78643 0.78276 1.20039 1.21998 1.20410 1.19448 0.91030 0.83825 1.43214 0.90039 1.44810 1.02571 1.01122 1.87038 1.20928 0.83707 0.91816 0.97733 1.22727 0.96968 0.94937 1.01355 1.22416 0.96230 0.92278 1.00666 0.89423 1.21285 0.85955 0.92549 0.98429 1.45892 1.24570 1.13442 1.51186 1.18305 0.84836 0.81836 0.80023 1.90737 1.55172 1.59565 1.39646 1.20983 0.95358 0.93304 0.99085 1.22284 0.98123 0.94769 0.99162 1.22071 0.92227 1.01958 0.94160 1.22853 1.01691 0.94097 0.96801 1.23430 0.91494 0.95675 0.96753 1.67510 1.06653 1.37405 1.07982 1.21712 0.95267 0.84606 0.97021 0.94389 0.97670 0.96799 0.89388 0.90853 0.91778 0.90113 0.74737 0.83740 0.80622 0.80225 0.79495 0.93827 0.96529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 10.31 21.65 0.22 -58.17 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.25 -14.16 10.28 84.03 0.86 -13.29 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -33.20 3.39 -691.93 -2.35 -35.55 16 10 C 0.18 9.25 5.37 86.73 0.47 9.71 16 11 C -0.12 -4.41 6.42 31.78 0.20 -4.21 16 12 C -0.10 -3.22 3.11 -9.40 -0.03 -3.25 16 13 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.14 4.14 5.12 86.38 0.44 4.58 16 15 N -0.70 -20.01 5.40 -465.67 -2.51 -22.52 16 16 C 0.56 16.86 7.81 86.89 0.68 17.54 16 17 O -0.57 -19.90 16.32 -3.74 -0.06 -19.96 16 18 C 0.05 1.23 6.75 41.91 0.28 1.51 16 19 C -0.12 -2.35 9.63 22.61 0.22 -2.13 16 20 C -0.08 -0.89 10.17 22.45 0.23 -0.66 16 21 C -0.13 -1.27 10.11 22.44 0.23 -1.05 16 22 C 0.09 1.26 11.18 84.81 0.95 2.21 16 23 N -0.48 -10.93 9.54 -184.91 -1.76 -12.70 16 24 C 0.14 5.76 6.41 86.86 0.56 6.32 16 25 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.01 0.29 7.51 -2.39 -0.02 0.27 16 27 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 30 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.42 11.38 7.67 -92.71 -0.71 10.66 16 33 H 0.14 2.75 7.64 -2.91 -0.02 2.73 16 34 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 Total: -1.00 -75.08 320.91 1.47 -73.61 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.35 Total: 12.97 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.55 Total: 13.85 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -6.40 Total: -128.95 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.08 1.47 -73.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028362293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.048 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds