Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.47079 * 29.99679 * 3 2 1 6 6 H 1.48497 * 109.47331 * 150.00096 * 3 2 1 7 7 C 1.38816 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65412 * 359.97438 * 9 7 2 11 11 C 1.54910 * 104.83576 * 155.90378 * 10 9 7 12 12 C 1.55153 * 101.57980 * 37.00954 * 11 10 9 13 13 H 1.09000 * 110.71786 * 83.03944 * 12 11 10 14 14 C 1.53002 * 110.72143 * 206.13053 * 12 11 10 15 15 N 1.46494 * 109.47001 * 182.56205 * 14 12 11 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 12 17 17 O 1.21512 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.48171 * 119.99714 * 179.97438 * 16 15 14 19 19 C 1.39306 * 119.72209 * 180.02562 * 18 16 15 20 20 C 1.38583 * 119.06306 * 179.97438 * 19 18 16 21 21 C 1.38637 * 118.48574 * 0.02562 * 20 19 18 22 22 C 1.38550 * 119.35061 * 359.97438 * 21 20 19 23 23 N 1.31524 * 120.90493 * 359.73883 * 22 21 20 24 24 C 1.47325 * 125.61631 * 180.19429 * 9 7 2 25 25 H 0.97004 * 119.99832 * 0.02562 * 1 2 3 26 26 H 1.09009 * 110.36288 * 37.06511 * 10 9 7 27 27 H 1.08997 * 110.46055 * 274.79329 * 10 9 7 28 28 H 1.09002 * 111.00179 * 278.94117 * 11 10 9 29 29 H 1.08994 * 111.03688 * 155.10240 * 11 10 9 30 30 H 1.09005 * 109.46767 * 62.56271 * 14 12 11 31 31 H 1.09002 * 109.47113 * 302.56611 * 14 12 11 32 32 H 0.96995 * 120.00292 * 0.27801 * 15 14 12 33 33 H 1.08008 * 120.46772 * 359.97438 * 19 18 16 34 34 H 1.07999 * 120.76313 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.32202 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.54805 * 180.02562 * 22 21 20 37 37 H 1.09003 * 110.05861 * 61.68212 * 24 9 7 38 38 H 1.08993 * 109.85005 * 300.42837 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5332 0.0028 11 6 -0.4022 -3.9328 -0.6077 12 6 0.7783 -4.7524 -0.0229 13 1 0.5452 -5.0998 0.9837 14 6 1.1223 -5.9322 -0.9344 15 7 2.1971 -6.7210 -0.3273 16 6 2.6675 -7.8160 -0.9569 17 8 2.2004 -8.1486 -2.0282 18 6 3.7550 -8.6136 -0.3432 19 6 4.2372 -9.7440 -0.9992 20 6 5.2550 -10.4796 -0.4131 21 6 5.7551 -10.0591 0.8097 22 6 5.2277 -8.9247 1.4053 23 7 4.2655 -8.2419 0.8241 24 6 1.9336 -3.7299 0.0063 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5998 -1.7593 -0.6132 27 1 -0.5284 -2.4853 1.0207 28 1 -0.3533 -3.8996 -1.6961 29 1 -1.3593 -4.3333 -0.2738 30 1 1.4494 -5.5583 -1.9046 31 1 0.2405 -6.5595 -1.0652 32 1 2.5678 -6.4574 0.5294 33 1 3.8237 -10.0429 -1.9511 34 1 5.6492 -11.3608 -0.8973 35 1 6.5485 -10.6099 1.2928 36 1 5.6151 -8.5940 2.3577 37 1 2.5281 -3.8678 0.9095 38 1 2.5616 -3.8548 -0.8757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028362294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = 24.679706 kcal Electronic energy + Delta-G solvation = -20384.641186 eV Core-core repulsion = 17227.697267 eV Total energy + Delta-G solvation = -3156.943920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74399 -39.07207 -37.55452 -34.70078 -33.02140 -32.35617 -31.66143 -29.73816 -28.23499 -25.83113 -24.67302 -23.79726 -23.10785 -20.89274 -20.02402 -19.68713 -18.14603 -16.99082 -16.73586 -16.29056 -15.70952 -15.35913 -15.13172 -14.77435 -14.56799 -13.90679 -13.78256 -13.58611 -13.37826 -12.73482 -12.46417 -12.26896 -11.74619 -11.66892 -11.46451 -10.92754 -10.77810 -10.51795 -10.29628 -10.27513 -10.09416 -9.98665 -9.81891 -9.68463 -9.51555 -9.47182 -8.91666 -8.62298 -6.80251 -5.62621 -3.03967 0.39966 0.90589 2.65851 3.11764 3.42042 3.46792 3.48860 3.67389 3.95547 4.48148 4.50963 4.58875 4.66986 4.75593 5.09968 5.17017 5.29590 5.41205 5.44491 5.55704 5.65344 5.72766 5.77825 5.92242 6.09049 6.13799 6.25794 6.38278 6.46133 6.60605 6.62045 6.76425 6.95185 7.36222 7.54457 7.65430 7.66810 7.88330 8.19290 8.39258 9.25170 9.85868 10.51152 11.41429 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027277 B = 0.003472 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.274655 B = 8063.007949 C = 8720.346664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.130 3.870 15 N -0.702 5.702 16 C 0.566 3.434 17 O -0.539 6.539 18 C 0.083 3.917 19 C -0.114 4.114 20 C -0.083 4.083 21 C -0.154 4.154 22 C 0.099 3.901 23 N -0.457 5.457 24 C 0.141 3.859 25 H 0.252 0.748 26 H 0.107 0.893 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.020 0.980 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 -20.748 1.769 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.007 3.993 15 N -0.352 5.352 16 C 0.350 3.650 17 O -0.416 6.416 18 C -0.056 4.056 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.174 4.174 22 C -0.061 4.061 23 N -0.169 5.169 24 C 0.015 3.985 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.038 0.962 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.390 -19.950 1.389 21.320 hybrid contribution 1.121 0.144 0.183 1.145 sum 8.511 -19.807 1.573 21.615 Atomic orbital electron populations 1.69798 1.04877 1.24714 1.57791 1.24786 0.95739 0.97702 1.02556 0.86068 0.78505 0.83341 0.77568 1.21608 1.21670 1.20765 1.19090 0.90516 0.82521 1.42847 0.90545 1.44582 1.01962 0.99716 1.86851 1.21925 0.84657 0.92485 0.98198 1.23005 0.95478 0.98601 1.00318 1.22445 0.98341 0.93941 0.98665 0.90492 1.21553 0.89056 0.91696 0.97029 1.45953 1.38015 1.26377 1.24875 1.17882 0.81786 0.80860 0.84470 1.90778 1.59467 1.70093 1.21265 1.21266 0.97057 0.94990 0.92244 1.22157 0.95952 0.94191 1.01180 1.21642 0.95005 0.99291 0.94957 1.22391 1.00780 0.98004 0.96245 1.22847 0.92154 0.91567 0.99528 1.67589 1.09839 1.30648 1.08827 1.21387 0.93442 0.85865 0.97840 0.93763 0.87527 0.97031 0.91814 0.92093 0.90951 0.91383 0.75156 0.83391 0.84094 0.84238 0.81929 0.96175 0.95749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.09 55.49 0.56 -26.62 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.28 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.76 3.40 -169.83 -0.58 -16.34 16 10 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 11 C -0.13 -2.54 6.54 -24.58 -0.16 -2.70 16 12 C -0.11 -1.98 2.98 -88.79 -0.26 -2.24 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.01 5.00 -4.04 -0.02 1.99 16 15 N -0.70 -10.26 5.42 -61.14 -0.33 -10.59 16 16 C 0.57 8.54 7.81 -12.18 -0.10 8.45 16 17 O -0.54 -9.45 16.32 5.36 0.09 -9.36 16 18 C 0.08 1.05 6.75 -83.01 -0.56 0.49 16 19 C -0.11 -1.17 9.63 -39.06 -0.38 -1.55 16 20 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 21 C -0.15 -1.03 10.11 -39.32 -0.40 -1.43 16 22 C 0.10 0.84 11.18 -17.57 -0.20 0.64 16 23 N -0.46 -5.39 9.54 -9.80 -0.09 -5.49 16 24 C 0.14 2.96 6.67 -2.90 -0.02 2.94 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.11 2.93 5.87 -51.92 -0.30 2.63 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.19 8.05 -51.93 -0.42 0.78 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.41 5.69 7.74 -40.82 -0.32 5.37 16 33 H 0.15 1.45 7.64 -52.48 -0.40 1.05 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.53 7.73 -51.93 -0.40 0.12 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -33.10 320.19 -8.49 -41.59 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.18 Total: 2.25 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.76 Total: 2.41 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.44 Total: -59.03 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.10 -8.49 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028362294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.274 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds