Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.47079 * 29.99679 * 3 2 1 6 6 H 1.48497 * 109.47331 * 150.00096 * 3 2 1 7 7 C 1.38816 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65412 * 359.97438 * 9 7 2 11 11 C 1.54910 * 104.83576 * 155.90378 * 10 9 7 12 12 C 1.55153 * 101.57980 * 37.00954 * 11 10 9 13 13 H 1.09000 * 110.71786 * 83.03944 * 12 11 10 14 14 C 1.53002 * 110.72143 * 206.13053 * 12 11 10 15 15 N 1.46494 * 109.47001 * 182.56205 * 14 12 11 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 12 17 17 O 1.21512 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.48171 * 119.99714 * 179.97438 * 16 15 14 19 19 C 1.39306 * 119.72209 * 180.02562 * 18 16 15 20 20 C 1.38583 * 119.06306 * 179.97438 * 19 18 16 21 21 C 1.38637 * 118.48574 * 0.02562 * 20 19 18 22 22 C 1.38550 * 119.35061 * 359.97438 * 21 20 19 23 23 N 1.31524 * 120.90493 * 359.73883 * 22 21 20 24 24 C 1.47325 * 125.61631 * 180.19429 * 9 7 2 25 25 H 0.97004 * 119.99832 * 0.02562 * 1 2 3 26 26 H 1.09009 * 110.36288 * 37.06511 * 10 9 7 27 27 H 1.08997 * 110.46055 * 274.79329 * 10 9 7 28 28 H 1.09002 * 111.00179 * 278.94117 * 11 10 9 29 29 H 1.08994 * 111.03688 * 155.10240 * 11 10 9 30 30 H 1.09005 * 109.46767 * 62.56271 * 14 12 11 31 31 H 1.09002 * 109.47113 * 302.56611 * 14 12 11 32 32 H 0.96995 * 120.00292 * 0.27801 * 15 14 12 33 33 H 1.08008 * 120.46772 * 359.97438 * 19 18 16 34 34 H 1.07999 * 120.76313 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.32202 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.54805 * 180.02562 * 22 21 20 37 37 H 1.09003 * 110.05861 * 61.68212 * 24 9 7 38 38 H 1.08993 * 109.85005 * 300.42837 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5332 0.0028 11 6 -0.4022 -3.9328 -0.6077 12 6 0.7783 -4.7524 -0.0229 13 1 0.5452 -5.0998 0.9837 14 6 1.1223 -5.9322 -0.9344 15 7 2.1971 -6.7210 -0.3273 16 6 2.6675 -7.8160 -0.9569 17 8 2.2004 -8.1486 -2.0282 18 6 3.7550 -8.6136 -0.3432 19 6 4.2372 -9.7440 -0.9992 20 6 5.2550 -10.4796 -0.4131 21 6 5.7551 -10.0591 0.8097 22 6 5.2277 -8.9247 1.4053 23 7 4.2655 -8.2419 0.8241 24 6 1.9336 -3.7299 0.0063 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5998 -1.7593 -0.6132 27 1 -0.5284 -2.4853 1.0207 28 1 -0.3533 -3.8996 -1.6961 29 1 -1.3593 -4.3333 -0.2738 30 1 1.4494 -5.5583 -1.9046 31 1 0.2405 -6.5595 -1.0652 32 1 2.5678 -6.4574 0.5294 33 1 3.8237 -10.0429 -1.9511 34 1 5.6492 -11.3608 -0.8973 35 1 6.5485 -10.6099 1.2928 36 1 5.6151 -8.5940 2.3577 37 1 2.5281 -3.8678 0.9095 38 1 2.5616 -3.8548 -0.8757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028362294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = 1.946497 kcal Electronic energy + Delta-G solvation = -20385.626972 eV Core-core repulsion = 17227.697267 eV Total energy + Delta-G solvation = -3157.929706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60155 -40.15599 -39.16069 -36.14347 -34.42350 -33.49077 -32.48419 -31.52695 -29.87082 -27.46604 -26.03862 -24.68623 -24.23811 -22.28198 -21.56897 -21.18831 -19.24958 -18.74506 -17.78180 -17.25871 -16.81049 -16.68834 -16.40894 -16.14796 -15.83476 -15.48249 -14.82926 -14.76552 -14.29442 -14.14791 -14.04234 -13.55730 -13.38473 -13.15128 -12.89366 -12.82693 -12.66844 -12.02018 -11.95613 -11.84661 -11.61411 -11.47336 -11.27714 -10.94393 -10.74663 -10.52649 -10.32964 -10.03630 -8.89021 -7.77792 -5.22171 -0.35282 0.27661 1.45998 1.48230 1.56875 1.69076 2.04803 2.49326 2.88806 3.13804 3.31381 3.60967 3.76030 3.86144 3.96145 3.99175 4.05638 4.07191 4.12038 4.43235 4.51065 4.63662 4.68085 4.75200 4.79128 4.89291 5.03546 5.08646 5.11981 5.17391 5.30102 5.38570 5.46808 5.65559 5.65997 5.82011 6.31274 6.36419 6.80123 7.08373 7.10978 7.77998 8.41975 9.24142 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027277 B = 0.003472 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.274655 B = 8063.007949 C = 8720.346664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.094 0.906 14 C 0.141 3.859 15 N -0.700 5.700 16 C 0.563 3.437 17 O -0.572 6.572 18 C 0.050 3.950 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.135 4.135 22 C 0.087 3.913 23 N -0.483 5.483 24 C 0.138 3.862 25 H 0.247 0.753 26 H 0.072 0.928 27 H -0.009 1.009 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.189 0.811 37 H 0.025 0.975 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -22.851 2.597 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.112 0.888 14 C 0.017 3.983 15 N -0.350 5.350 16 C 0.349 3.651 17 O -0.452 6.452 18 C -0.087 4.087 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.154 4.154 22 C -0.073 4.073 23 N -0.195 5.195 24 C 0.013 3.987 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.009 0.991 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.253 0.747 33 H 0.162 0.838 34 H 0.194 0.806 35 H 0.198 0.802 36 H 0.206 0.794 37 H 0.043 0.957 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.266 -22.077 2.226 24.047 hybrid contribution 0.647 0.720 -0.016 0.968 sum 9.913 -21.358 2.210 23.649 Atomic orbital electron populations 1.70054 1.06171 1.25050 1.58548 1.25645 0.96696 1.00983 1.02672 0.85036 0.77573 0.78959 0.77503 1.21244 1.21820 1.19550 1.19455 0.90973 0.83937 1.42686 0.90421 1.44907 1.02869 1.00867 1.86830 1.21736 0.83931 0.94906 0.96686 1.22850 0.97629 0.95379 1.00117 1.22280 0.95897 0.93283 0.99912 0.88761 1.21327 0.89926 0.91231 0.95773 1.45886 1.37830 1.26339 1.24985 1.18337 0.82017 0.80688 0.84034 1.90741 1.60810 1.70980 1.22683 1.20961 0.97890 0.96228 0.93627 1.22282 0.96918 0.93984 1.01199 1.22071 0.93578 0.99670 0.95102 1.22861 1.00342 0.96789 0.95419 1.23440 0.91386 0.92060 1.00420 1.67502 1.11260 1.31942 1.08787 1.21523 0.94733 0.84817 0.97598 0.94282 0.90953 0.99144 0.91712 0.88993 0.92416 0.90041 0.74677 0.83829 0.80635 0.80175 0.79373 0.95687 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.42 10.09 21.65 0.22 -57.20 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.24 -13.96 10.28 84.04 0.86 -13.09 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -33.36 3.40 -691.23 -2.35 -35.71 16 10 C 0.15 7.63 5.89 86.86 0.51 8.14 16 11 C -0.12 -4.47 6.54 31.99 0.21 -4.26 16 12 C -0.09 -3.17 2.98 -9.61 -0.03 -3.20 16 13 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 14 C 0.14 4.27 5.00 86.38 0.43 4.70 16 15 N -0.70 -20.26 5.42 -465.65 -2.52 -22.79 16 16 C 0.56 17.14 7.81 86.88 0.68 17.82 16 17 O -0.57 -20.43 16.32 -3.75 -0.06 -20.49 16 18 C 0.05 1.24 6.75 41.91 0.28 1.52 16 19 C -0.12 -2.39 9.63 22.61 0.22 -2.17 16 20 C -0.08 -0.89 10.17 22.45 0.23 -0.67 16 21 C -0.13 -1.25 10.11 22.44 0.23 -1.02 16 22 C 0.09 1.24 11.18 84.81 0.95 2.19 16 23 N -0.48 -10.83 9.54 -184.92 -1.76 -12.59 16 24 C 0.14 5.84 6.67 86.67 0.58 6.42 16 25 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.07 4.14 5.87 -2.38 -0.01 4.12 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.06 1.94 8.01 -2.38 -0.02 1.92 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.42 11.30 7.74 -92.71 -0.72 10.58 16 33 H 0.14 2.80 7.64 -2.91 -0.02 2.78 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.02 0.82 7.73 -2.39 -0.02 0.80 16 Total: -1.00 -74.49 320.19 1.51 -72.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.35 Total: 14.35 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.61 Total: 12.93 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.42 Total: -128.29 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.49 1.51 -72.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028362294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.932 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds