Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47156 * 270.00668 * 3 2 1 5 5 H 1.48497 * 109.47081 * 30.00583 * 3 2 1 6 6 H 1.48503 * 109.46955 * 150.00440 * 3 2 1 7 7 C 1.38814 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65157 * 359.97197 * 9 7 2 11 11 C 1.54909 * 104.83107 * 204.15985 * 10 9 7 12 12 C 1.55157 * 101.58064 * 322.98525 * 11 10 9 13 13 H 1.09001 * 110.87165 * 277.06705 * 12 11 10 14 14 C 1.53001 * 110.72265 * 153.86607 * 12 11 10 15 15 N 1.46491 * 109.47538 * 180.02562 * 14 12 11 16 16 C 1.34778 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21513 * 119.99953 * 0.02562 * 16 15 14 18 18 C 1.48151 * 119.99888 * 179.97438 * 16 15 14 19 19 C 1.39813 * 120.92180 * 180.02562 * 18 16 15 20 20 C 1.38146 * 119.00419 * 180.02562 * 19 18 16 21 21 N 1.31814 * 120.89537 * 0.02562 * 20 19 18 22 22 C 1.31813 * 122.04819 * 359.97438 * 21 20 19 23 23 C 1.38150 * 120.89818 * 359.97438 * 22 21 20 24 24 C 1.47023 * 125.64666 * 180.02562 * 9 7 2 25 25 H 0.97004 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.09000 * 110.36601 * 322.99530 * 10 9 7 27 27 H 1.08998 * 110.37103 * 85.31925 * 10 9 7 28 28 H 1.08999 * 111.00472 * 204.91325 * 11 10 9 29 29 H 1.08991 * 111.00835 * 81.06176 * 11 10 9 30 30 H 1.09003 * 109.46694 * 60.02218 * 14 12 11 31 31 H 1.08998 * 109.47124 * 300.03038 * 14 12 11 32 32 H 0.97000 * 119.99949 * 359.97438 * 15 14 12 33 33 H 1.08004 * 120.50158 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.55523 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.55125 * 179.97438 * 22 21 20 36 36 H 1.07994 * 120.50391 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.88219 * 59.49207 * 24 9 7 38 38 H 1.09008 * 110.01328 * 298.40054 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4011 -3.9321 0.6130 12 6 0.7784 -4.7524 0.0272 13 1 0.5471 -5.1006 -0.9795 14 6 1.1240 -5.9311 0.9394 15 7 2.2393 -6.6851 0.3618 16 6 2.7174 -7.7736 0.9967 17 8 2.2230 -8.1298 2.0480 18 6 3.8449 -8.5365 0.4122 19 6 4.3556 -9.6687 1.0541 20 6 5.4082 -10.3499 0.4741 21 7 5.9295 -9.9453 -0.6670 22 6 5.4783 -8.8836 -1.3047 23 6 4.4278 -8.1441 -0.7966 24 6 1.9318 -3.7275 -0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.5988 -1.7587 0.6164 27 1 -0.5281 -2.4870 -1.0175 28 1 -1.3587 -4.3327 0.2804 29 1 -0.3506 -3.8978 1.7012 30 1 0.2556 -6.5830 1.0353 31 1 1.4085 -5.5579 1.9232 32 1 2.6332 -6.4014 -0.4780 33 1 3.9336 -10.0057 1.9895 34 1 5.8093 -11.2259 0.9620 35 1 5.9359 -8.5878 -2.2371 36 1 4.0634 -7.2751 -1.3242 37 1 2.5587 -3.8506 0.8826 38 1 2.5294 -3.8665 -0.9015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028373353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = 24.910664 kcal Electronic energy + Delta-G solvation = -20398.587263 eV Core-core repulsion = 17241.653358 eV Total energy + Delta-G solvation = -3156.933905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79034 -39.26204 -37.68997 -34.86077 -33.15132 -32.38729 -31.53028 -29.84952 -28.34594 -25.95083 -24.79317 -23.81751 -23.15335 -21.01003 -20.10267 -19.80433 -18.33343 -16.95461 -16.78925 -16.00899 -15.85016 -15.54913 -15.31922 -14.82303 -14.62419 -14.10698 -13.99188 -13.75199 -13.51818 -12.90804 -12.57229 -12.05625 -11.81149 -11.76568 -11.55435 -10.99686 -10.84234 -10.61137 -10.34736 -10.19881 -10.15372 -10.06269 -9.89072 -9.74749 -9.55822 -9.53495 -9.11521 -8.69147 -6.88396 -5.69639 -3.11616 0.43429 0.76295 2.72210 2.96360 3.37227 3.42344 3.44375 3.58373 4.09479 4.31722 4.44116 4.48142 4.64829 4.75386 5.01155 5.16308 5.19697 5.33309 5.41937 5.47436 5.50247 5.62393 5.74275 5.80821 5.98382 6.03030 6.23817 6.27947 6.31316 6.47910 6.52709 6.64284 6.83304 7.34398 7.46475 7.57105 7.58308 7.81184 8.00915 8.32035 9.17773 9.78683 10.43065 11.34323 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.003492 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.467535 B = 8017.060342 C = 8718.026879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.714 5.714 16 C 0.553 3.447 17 O -0.533 6.533 18 C -0.084 4.084 19 C -0.117 4.117 20 C 0.094 3.906 21 N -0.473 5.473 22 C 0.096 3.904 23 C -0.141 4.141 24 C 0.141 3.859 25 H 0.252 0.748 26 H 0.107 0.893 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.024 0.976 38 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -17.682 -1.545 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.365 5.365 16 C 0.339 3.661 17 O -0.410 6.410 18 C -0.095 4.095 19 C -0.138 4.138 20 C -0.063 4.063 21 N -0.182 5.182 22 C -0.060 4.060 23 C -0.162 4.162 24 C 0.015 3.985 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.042 0.958 38 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.308 -18.131 -1.132 19.230 hybrid contribution -0.035 1.505 -0.196 1.518 sum 6.272 -16.627 -1.328 17.820 Atomic orbital electron populations 1.69794 1.04904 1.24840 1.57505 1.24796 0.95742 0.97764 1.02328 0.86067 0.78552 0.83272 0.77574 1.21602 1.21602 1.20680 1.19072 0.90497 0.82475 1.43252 0.90527 1.44496 1.01989 0.99679 1.86853 1.21941 0.84649 0.92496 0.98228 1.23010 0.95474 0.98561 1.00359 1.22466 0.98491 0.93928 0.98627 0.90473 1.21543 0.87940 0.92239 0.97436 1.46001 1.36131 1.28040 1.26375 1.18178 0.82700 0.80708 0.84495 1.90779 1.59643 1.68318 1.22296 1.20466 0.96769 0.96640 0.95627 1.22340 0.96326 0.94079 1.01041 1.22824 0.92839 0.99043 0.91552 1.67571 1.28424 1.13926 1.08282 1.22791 0.93319 0.90572 0.99344 1.22428 0.97260 1.00967 0.95531 1.21324 0.93442 0.86075 0.97687 0.93680 0.87484 0.96955 0.92032 0.91763 0.91286 0.90878 0.76266 0.83415 0.82003 0.81978 0.84092 0.95816 0.96474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 10 C 0.15 3.58 5.89 -2.53 -0.01 3.56 16 11 C -0.13 -2.41 6.53 -24.58 -0.16 -2.57 16 12 C -0.12 -1.84 3.02 -88.79 -0.27 -2.10 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 1.85 4.99 -4.05 -0.02 1.83 16 15 N -0.71 -8.82 5.36 -61.16 -0.33 -9.14 16 16 C 0.55 7.41 7.80 -12.19 -0.10 7.31 16 17 O -0.53 -8.89 16.45 5.35 0.09 -8.80 16 18 C -0.08 -0.92 5.91 -104.65 -0.62 -1.54 16 19 C -0.12 -1.17 9.68 -39.03 -0.38 -1.54 16 20 C 0.09 0.84 11.17 -17.59 -0.20 0.64 16 21 N -0.47 -4.76 10.34 -13.30 -0.14 -4.90 16 22 C 0.10 0.84 11.17 -17.59 -0.20 0.64 16 23 C -0.14 -1.25 9.62 -39.02 -0.38 -1.63 16 24 C 0.14 2.76 6.52 -3.07 -0.02 2.74 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 32 H 0.40 4.11 6.47 -40.82 -0.26 3.85 16 33 H 0.15 1.38 7.74 -52.48 -0.41 0.97 16 34 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.14 0.95 6.54 -52.49 -0.34 0.60 16 37 H 0.02 0.48 7.76 -51.93 -0.40 0.07 16 38 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -32.75 318.03 -8.28 -41.03 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.06 Total: 1.29 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.59 Total: 0.60 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.48 Total: -55.72 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.75 -8.28 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028373353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.940 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds