Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47156 * 270.00668 * 3 2 1 5 5 H 1.48497 * 109.47081 * 30.00583 * 3 2 1 6 6 H 1.48503 * 109.46955 * 150.00440 * 3 2 1 7 7 C 1.38814 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65157 * 359.97197 * 9 7 2 11 11 C 1.54909 * 104.83107 * 204.15985 * 10 9 7 12 12 C 1.55157 * 101.58064 * 322.98525 * 11 10 9 13 13 H 1.09001 * 110.87165 * 277.06705 * 12 11 10 14 14 C 1.53001 * 110.72265 * 153.86607 * 12 11 10 15 15 N 1.46491 * 109.47538 * 180.02562 * 14 12 11 16 16 C 1.34778 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21513 * 119.99953 * 0.02562 * 16 15 14 18 18 C 1.48151 * 119.99888 * 179.97438 * 16 15 14 19 19 C 1.39813 * 120.92180 * 180.02562 * 18 16 15 20 20 C 1.38146 * 119.00419 * 180.02562 * 19 18 16 21 21 N 1.31814 * 120.89537 * 0.02562 * 20 19 18 22 22 C 1.31813 * 122.04819 * 359.97438 * 21 20 19 23 23 C 1.38150 * 120.89818 * 359.97438 * 22 21 20 24 24 C 1.47023 * 125.64666 * 180.02562 * 9 7 2 25 25 H 0.97004 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.09000 * 110.36601 * 322.99530 * 10 9 7 27 27 H 1.08998 * 110.37103 * 85.31925 * 10 9 7 28 28 H 1.08999 * 111.00472 * 204.91325 * 11 10 9 29 29 H 1.08991 * 111.00835 * 81.06176 * 11 10 9 30 30 H 1.09003 * 109.46694 * 60.02218 * 14 12 11 31 31 H 1.08998 * 109.47124 * 300.03038 * 14 12 11 32 32 H 0.97000 * 119.99949 * 359.97438 * 15 14 12 33 33 H 1.08004 * 120.50158 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.55523 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.55125 * 179.97438 * 22 21 20 36 36 H 1.07994 * 120.50391 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.88219 * 59.49207 * 24 9 7 38 38 H 1.09008 * 110.01328 * 298.40054 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4011 -3.9321 0.6130 12 6 0.7784 -4.7524 0.0272 13 1 0.5471 -5.1006 -0.9795 14 6 1.1240 -5.9311 0.9394 15 7 2.2393 -6.6851 0.3618 16 6 2.7174 -7.7736 0.9967 17 8 2.2230 -8.1298 2.0480 18 6 3.8449 -8.5365 0.4122 19 6 4.3556 -9.6687 1.0541 20 6 5.4082 -10.3499 0.4741 21 7 5.9295 -9.9453 -0.6670 22 6 5.4783 -8.8836 -1.3047 23 6 4.4278 -8.1441 -0.7966 24 6 1.9318 -3.7275 -0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.5988 -1.7587 0.6164 27 1 -0.5281 -2.4870 -1.0175 28 1 -1.3587 -4.3327 0.2804 29 1 -0.3506 -3.8978 1.7012 30 1 0.2556 -6.5830 1.0353 31 1 1.4085 -5.5579 1.9232 32 1 2.6332 -6.4014 -0.4780 33 1 3.9336 -10.0057 1.9895 34 1 5.8093 -11.2259 0.9620 35 1 5.9359 -8.5878 -2.2371 36 1 4.0634 -7.2751 -1.3242 37 1 2.5587 -3.8506 0.8826 38 1 2.5294 -3.8665 -0.9015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028373353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = 2.814957 kcal Electronic energy + Delta-G solvation = -20399.545404 eV Core-core repulsion = 17241.653358 eV Total energy + Delta-G solvation = -3157.892046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63175 -40.24805 -39.20414 -36.19326 -34.50725 -33.61900 -32.25979 -31.55257 -29.88530 -27.48710 -26.11285 -24.78780 -24.19939 -22.30085 -21.58214 -21.17948 -19.34316 -18.77568 -17.74921 -17.15208 -16.69451 -16.66901 -16.42678 -16.27850 -15.96062 -15.51104 -14.85059 -14.83162 -14.46263 -14.29646 -14.24818 -13.55423 -13.39449 -13.14924 -12.82254 -12.69493 -12.66822 -12.01971 -11.95957 -11.83454 -11.60564 -11.46503 -11.27371 -11.00687 -10.74135 -10.53114 -10.19838 -10.19280 -8.88024 -7.77733 -5.21743 -0.35693 0.09921 1.46828 1.48228 1.56944 1.78003 1.96728 2.49495 2.84862 3.31976 3.44717 3.51323 3.62602 3.78011 3.84473 3.94173 3.97167 4.05446 4.07916 4.43647 4.54106 4.63510 4.68111 4.74634 4.81739 4.83051 4.90589 5.03236 5.04720 5.12859 5.26797 5.38551 5.47921 5.61171 5.66468 5.83110 6.32023 6.37367 6.89906 7.01475 7.11332 7.79384 8.42386 9.24103 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.003492 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.467535 B = 8017.060342 C = 8718.026879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.100 0.900 14 C 0.142 3.858 15 N -0.706 5.706 16 C 0.555 3.445 17 O -0.572 6.572 18 C -0.102 4.102 19 C -0.125 4.125 20 C 0.095 3.905 21 N -0.491 5.491 22 C 0.094 3.906 23 C -0.136 4.136 24 C 0.136 3.864 25 H 0.247 0.753 26 H 0.070 0.930 27 H -0.009 1.009 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.414 0.586 33 H 0.147 0.853 34 H 0.189 0.811 35 H 0.191 0.809 36 H 0.163 0.837 37 H 0.020 0.980 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -18.978 -2.466 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.118 0.882 14 C 0.019 3.981 15 N -0.357 5.357 16 C 0.342 3.658 17 O -0.452 6.452 18 C -0.113 4.113 19 C -0.146 4.146 20 C -0.061 4.061 21 N -0.200 5.200 22 C -0.062 4.062 23 C -0.156 4.156 24 C 0.011 3.989 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.009 0.991 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.251 0.749 33 H 0.165 0.835 34 H 0.206 0.794 35 H 0.207 0.793 36 H 0.181 0.819 37 H 0.038 0.962 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.550 -19.453 -2.077 20.970 hybrid contribution -0.369 1.875 0.068 1.912 sum 7.181 -17.578 -2.010 19.094 Atomic orbital electron populations 1.70054 1.06175 1.24994 1.58617 1.25623 0.96636 1.00964 1.02783 0.85071 0.77594 0.79150 0.77474 1.21243 1.22082 1.19542 1.19450 0.91010 0.83891 1.42497 0.90207 1.44818 1.02838 1.00998 1.86824 1.21733 0.84067 0.94885 0.96668 1.22848 0.97838 0.95451 1.00017 1.22306 0.95811 0.93197 1.00056 0.88223 1.21293 0.88938 0.91772 0.96120 1.45859 1.35619 1.27581 1.26682 1.18519 0.82824 0.80563 0.83908 1.90757 1.61042 1.69385 1.24044 1.20395 0.96769 0.97251 0.96899 1.22453 0.96800 0.94143 1.01224 1.23211 0.92198 0.99502 0.91230 1.67641 1.28951 1.14656 1.08790 1.23284 0.92983 0.89916 1.00049 1.22644 0.96885 1.01453 0.94636 1.21516 0.94765 0.84668 0.97922 0.94359 0.91223 0.99063 0.89123 0.91933 0.90135 0.92560 0.74851 0.83489 0.79448 0.79252 0.81940 0.96235 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.08 10.09 21.65 0.22 -55.86 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -31.49 3.39 -691.99 -2.35 -33.84 16 10 C 0.15 7.23 5.89 86.86 0.51 7.74 16 11 C -0.12 -4.22 6.53 31.99 0.21 -4.01 16 12 C -0.09 -2.78 3.02 -9.61 -0.03 -2.81 16 13 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 14 C 0.14 3.70 4.99 86.38 0.43 4.14 16 15 N -0.71 -15.86 5.36 -465.69 -2.50 -18.35 16 16 C 0.55 14.11 7.80 86.88 0.68 14.78 16 17 O -0.57 -18.78 16.45 -3.75 -0.06 -18.84 16 18 C -0.10 -2.07 5.91 -19.88 -0.12 -2.19 16 19 C -0.13 -2.35 9.68 22.63 0.22 -2.13 16 20 C 0.09 1.51 11.17 84.67 0.95 2.45 16 21 N -0.49 -8.78 10.34 -196.01 -2.03 -10.80 16 22 C 0.09 1.37 11.17 84.67 0.95 2.32 16 23 C -0.14 -2.06 9.62 22.63 0.22 -1.84 16 24 C 0.14 5.15 6.52 86.73 0.57 5.71 16 25 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 2.18 8.05 -2.39 -0.02 2.16 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 32 H 0.41 7.22 6.47 -92.71 -0.60 6.62 16 33 H 0.15 2.69 7.74 -2.91 -0.02 2.66 16 34 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.16 1.63 6.54 -2.91 -0.02 1.61 16 37 H 0.02 0.76 7.76 -2.39 -0.02 0.74 16 38 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -72.09 318.03 1.69 -70.39 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.47 Total: 11.59 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.91 Total: 8.45 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -6.65 Total: -118.86 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.06 Total: -18.84 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.09 1.69 -70.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028373353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.210 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds