Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21632 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.47261 * 120.00199 * 179.97438 * 13 12 11 16 16 C 1.36762 * 126.94054 * 0.03160 * 15 13 12 17 17 N 1.34660 * 108.39544 * 179.97438 * 16 15 13 18 18 H 0.96999 * 124.85231 * 179.97438 * 17 16 15 19 19 C 1.36439 * 110.29862 * 359.97438 * 17 16 15 20 20 C 1.34490 * 108.85889 * 359.71213 * 19 17 16 21 21 C 1.50693 * 126.83765 * 180.26802 * 20 19 17 22 22 C 1.53000 * 117.50114 * 8.94737 * 21 20 19 23 23 C 1.53001 * 117.49777 * 300.28780 * 21 20 19 24 24 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 25 25 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 26 26 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 27 27 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 28 28 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 29 29 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 30 30 H 1.08003 * 125.80752 * 0.02562 * 16 15 13 31 31 H 1.08001 * 125.57519 * 180.02562 * 19 17 16 32 32 H 1.09001 * 115.55159 * 154.62231 * 21 20 19 33 33 H 1.08997 * 117.49734 * 0.02562 * 22 21 20 34 34 H 1.08997 * 117.49821 * 145.02077 * 22 21 20 35 35 H 1.09004 * 117.50186 * 214.97909 * 23 21 20 36 36 H 1.09005 * 117.49865 * 0.02562 * 23 21 20 37 37 H 1.09001 * 113.46790 * 321.86691 * 24 9 7 38 38 H 1.09000 * 113.46631 * 92.30253 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6884 -0.5080 1.5342 15 6 9.1348 -0.8316 -0.2664 16 6 9.4308 -1.1809 -1.5551 17 7 10.7553 -1.0277 -1.7434 18 1 11.2217 -1.2093 -2.5743 19 6 11.3475 -0.5803 -0.5986 20 6 10.4048 -0.4318 0.3491 21 6 10.6127 0.0456 1.7632 22 6 11.9911 0.6018 2.1257 23 6 11.5555 -0.7679 2.6521 24 6 4.4119 -2.2311 -0.3331 25 1 -0.4851 -0.8370 0.0714 26 1 4.6554 0.1221 -1.2583 27 1 4.2793 0.6483 0.4381 28 1 5.4518 -1.3039 1.3917 29 1 6.8212 -1.5052 -1.2580 30 1 8.7225 -1.5211 -2.2962 31 1 12.4004 -0.3739 -0.4751 32 1 9.7446 0.5038 2.2371 33 1 12.7475 0.6228 1.3412 34 1 12.0299 1.4257 2.8383 35 1 11.3079 -0.8446 3.7109 36 1 12.0258 -1.6483 2.2139 37 1 4.2436 -3.1276 0.2637 38 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031173277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = 101.170360 kcal Electronic energy + Delta-G solvation = -20592.052667 eV Core-core repulsion = 17438.425631 eV Total energy + Delta-G solvation = -3153.627036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40192 -39.36533 -37.69970 -37.06969 -33.59840 -32.15242 -30.93034 -29.27479 -27.54010 -25.33431 -23.76524 -23.28524 -22.43719 -21.83319 -19.96736 -19.66286 -18.86648 -18.52987 -17.43229 -16.27792 -15.83199 -15.37745 -15.28551 -14.82376 -14.39273 -14.11959 -14.05802 -13.53007 -13.38626 -13.11270 -12.51952 -12.10224 -11.94086 -11.70749 -11.62675 -11.51294 -11.35272 -10.87793 -10.51973 -10.39734 -10.32689 -9.62086 -9.47042 -9.17942 -8.84527 -8.76094 -8.39074 -8.37349 -7.15053 -6.31542 -3.22799 1.69338 2.16801 2.97804 3.46813 3.49275 3.52393 3.64377 3.70526 3.99921 4.50866 4.62134 4.77841 4.80034 4.85372 4.93893 5.03582 5.09621 5.19783 5.43791 5.44763 5.52330 5.60496 5.76111 5.83804 5.91662 5.98766 6.02437 6.19070 6.28661 6.31706 6.37671 6.54198 6.59859 6.72498 7.07258 7.09719 7.21266 7.87481 8.24465 8.60472 8.98301 9.50465 10.35563 11.21424 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.003914 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.630587 B = 7152.537173 C = 7468.048012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.305 4.305 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.087 3.913 11 C 0.104 3.896 12 N -0.716 5.716 13 C 0.586 3.414 14 O -0.542 6.542 15 C -0.215 4.215 16 C 0.045 3.955 17 N -0.550 5.550 18 H 0.417 0.583 19 C -0.026 4.026 20 C -0.075 4.075 21 C -0.075 4.075 22 C -0.183 4.183 23 C -0.172 4.172 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.394 0.606 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.376 -2.645 -4.118 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.221 4.221 3 Si 0.903 3.097 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.432 4.432 8 H 0.102 0.898 9 N -0.351 5.351 10 C -0.040 4.040 11 C -0.001 4.001 12 N -0.366 5.366 13 C 0.374 3.626 14 O -0.420 6.420 15 C -0.225 4.225 16 C -0.091 4.091 17 N -0.144 5.144 18 H 0.253 0.747 19 C -0.153 4.153 20 C -0.082 4.082 21 C -0.094 4.094 22 C -0.220 4.220 23 C -0.209 4.209 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.228 0.772 30 H 0.190 0.810 31 H 0.183 0.817 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 26.868 -0.787 -3.401 27.094 hybrid contribution 0.397 -1.965 -0.996 2.239 sum 27.265 -2.752 -4.397 27.754 Atomic orbital electron populations 1.70931 1.05310 1.29443 1.51792 1.25747 0.96407 1.01020 0.98942 0.83696 0.73682 0.75851 0.76485 1.22218 1.21896 1.21436 1.20109 0.78198 0.95928 1.48916 0.89785 1.45689 1.02120 1.01920 1.85370 1.23244 0.87703 0.94505 0.98569 1.23425 0.78803 0.98651 0.99259 1.45839 1.07413 1.68167 1.15172 1.17415 0.82850 0.76572 0.85757 1.90744 1.86124 1.48364 1.16721 1.20419 0.93724 1.14113 0.94293 1.21948 0.85333 1.04216 0.97633 1.41424 1.07454 1.52702 1.12851 0.74667 1.21434 0.98547 1.09119 0.86229 1.19645 0.90864 1.03613 0.94068 1.20411 0.94421 1.02962 0.91557 1.23000 0.97931 0.97430 1.03631 1.22981 1.03574 0.94657 0.99685 1.22646 0.87265 0.93786 0.97469 0.92899 0.93628 0.92792 0.86040 0.77188 0.80964 0.81671 0.85779 0.89194 0.88691 0.88687 0.89101 0.93099 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.70 55.49 0.76 -29.15 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 3 Si 1.07 27.80 25.13 -169.99 -4.27 23.53 16 4 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 5 H -0.29 -7.34 6.65 56.52 0.38 -6.97 16 6 H -0.29 -6.94 6.13 56.52 0.35 -6.60 16 7 C -0.31 -8.98 11.08 -15.06 -0.17 -9.15 16 8 H 0.08 2.57 8.05 -52.49 -0.42 2.15 16 9 N -0.62 -15.65 3.70 -184.60 -0.68 -16.33 16 10 C 0.09 1.91 5.53 -8.37 -0.05 1.87 16 11 C 0.10 1.95 4.62 -67.67 -0.31 1.64 16 12 N -0.72 -10.64 5.38 -54.61 -0.29 -10.93 16 13 C 0.59 9.47 7.81 -12.59 -0.10 9.37 16 14 O -0.54 -10.79 15.01 5.25 0.08 -10.71 16 15 C -0.21 -2.77 6.29 -103.35 -0.65 -3.42 16 16 C 0.04 0.39 11.40 -16.85 -0.19 0.20 16 17 N -0.55 -3.70 5.90 -12.85 -0.08 -3.78 16 18 H 0.42 1.26 8.96 -40.82 -0.37 0.90 16 19 C -0.03 -0.22 11.26 -16.83 -0.19 -0.41 16 20 C -0.08 -0.91 6.02 -102.54 -0.62 -1.52 16 21 C -0.07 -0.91 5.78 -91.77 -0.53 -1.44 16 22 C -0.18 -1.65 10.03 -26.69 -0.27 -1.92 16 23 C -0.17 -1.72 10.24 -26.69 -0.27 -2.00 16 24 C 0.12 2.26 8.44 -8.50 -0.07 2.19 16 25 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 26 H 0.05 0.97 7.73 -51.93 -0.40 0.56 16 27 H 0.05 1.28 4.65 -51.93 -0.24 1.04 16 28 H 0.12 2.47 7.45 -51.93 -0.39 2.09 16 29 H 0.39 4.49 7.70 -40.82 -0.31 4.18 16 30 H 0.17 0.96 7.45 -52.48 -0.39 0.57 16 31 H 0.17 0.96 7.16 -52.49 -0.38 0.58 16 32 H 0.12 1.84 7.03 -51.93 -0.37 1.48 16 33 H 0.09 0.66 7.00 -51.93 -0.36 0.30 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -36.85 315.33 -8.22 -45.07 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.97 Total: 2.93 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.51 Total: -5.37 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.29 Total: -60.19 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 27.80 SS G_CDS: -4.27 Total: 23.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.85 -8.22 -45.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031173277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.237 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds