Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00340 * 3 2 1 5 5 H 1.48505 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00440 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.47869 * 126.94823 * 0.04395 * 9 7 2 11 11 C 1.56019 * 105.10550 * 181.96668 * 10 9 7 12 12 H 1.08998 * 116.24579 * 159.67892 * 11 10 9 13 13 C 1.57084 * 99.60544 * 32.80701 * 11 10 9 14 14 C 1.49296 * 126.94151 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15181 * 15.87346 * 14 9 7 16 16 C 1.56020 * 104.08857 * 246.72977 * 14 9 7 17 17 N 1.47870 * 105.10881 * 288.76568 * 16 14 9 18 18 C 1.34765 * 126.94601 * 181.97955 * 17 16 14 19 19 O 1.21282 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00292 * 0.02791 * 18 17 16 21 21 C 1.50693 * 109.47172 * 179.97438 * 20 18 17 22 22 C 1.34850 * 125.89354 * 274.68983 * 21 20 18 23 23 C 1.40899 * 107.41819 * 179.88680 * 22 21 20 24 24 C 1.34851 * 107.41479 * 0.38002 * 23 22 21 25 25 N 1.36341 * 108.22002 * 359.76764 * 24 23 22 26 26 H 0.96998 * 125.63913 * 179.97438 * 25 24 23 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.31728 * 300.87298 * 10 9 7 29 29 H 1.09001 * 110.31344 * 63.06059 * 10 9 7 30 30 H 1.09004 * 112.36733 * 191.71373 * 13 11 10 31 31 H 1.08995 * 112.36895 * 64.27368 * 13 11 10 32 32 H 1.08999 * 110.31874 * 47.67600 * 16 14 9 33 33 H 1.09000 * 110.31203 * 169.85667 * 16 14 9 34 34 H 1.08994 * 109.47027 * 299.99931 * 20 18 17 35 35 H 1.08995 * 109.46730 * 59.99843 * 20 18 17 36 36 H 1.07994 * 126.29041 * 0.03141 * 22 21 20 37 37 H 1.07997 * 126.28908 * 180.12808 * 23 22 21 38 38 H 1.07995 * 125.88910 * 179.80608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0009 11 6 -0.3637 -4.1104 0.0510 12 1 -1.3411 -4.4457 0.3978 13 6 0.8840 -4.5255 0.9104 14 6 1.9104 -3.7617 -0.0005 15 1 2.9644 -3.8351 0.2671 16 6 1.5091 -4.3453 -1.3907 17 7 0.0523 -4.5833 -1.3028 18 6 -0.7398 -5.1183 -2.2528 19 8 -1.9268 -5.2565 -2.0455 20 6 -0.1508 -5.5450 -3.5727 21 6 -1.2393 -6.1069 -4.4504 22 6 -1.6835 -7.3801 -4.4418 23 6 -2.7025 -7.4779 -5.4100 24 6 -2.8363 -6.2627 -5.9792 25 7 -1.9409 -5.4171 -5.3943 26 1 -1.8222 -4.4797 -5.6137 27 1 -0.4850 0.8400 0.0004 28 1 -0.5816 -2.0919 0.8762 29 1 -0.5736 -2.1531 -0.9124 30 1 1.0491 -5.6029 0.9083 31 1 0.8449 -4.1198 1.9213 32 1 1.7281 -3.6267 -2.1804 33 1 2.0352 -5.2821 -1.5740 34 1 0.3036 -4.6841 -4.0630 35 1 0.6082 -6.3084 -3.4020 36 1 -1.3257 -8.1776 -3.8075 37 1 -3.2691 -8.3642 -5.6544 38 1 -3.5330 -6.0039 -6.7627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032792712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = 71.880153 kcal Electronic energy + Delta-G solvation = -21357.161943 eV Core-core repulsion = 18202.264789 eV Total energy + Delta-G solvation = -3154.897155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02811 -39.94086 -37.73170 -33.64223 -32.11069 -31.10239 -30.77667 -29.04828 -28.55887 -26.33546 -25.20522 -23.44151 -20.99059 -20.43441 -19.96862 -19.84241 -18.50831 -17.35400 -17.15733 -16.27904 -15.66261 -15.12623 -14.60742 -14.05013 -13.80120 -13.59845 -13.45924 -13.26187 -12.94378 -12.37432 -12.17858 -12.13527 -11.88950 -11.66176 -11.49185 -11.32888 -11.02676 -10.88003 -10.79895 -10.62333 -10.28867 -10.12280 -9.66730 -9.44967 -8.74220 -8.70623 -7.99664 -7.89415 -6.96502 -5.80273 -3.15177 2.33922 3.06017 3.10620 3.34304 3.38743 3.39702 3.40861 3.60002 4.38568 4.83445 4.92113 5.16013 5.17164 5.20867 5.29239 5.37925 5.49705 5.53255 5.60950 5.64177 5.76251 5.83904 5.90943 6.15243 6.27818 6.33836 6.39553 6.42865 6.48183 6.57763 6.68005 7.12175 7.25742 7.39032 7.45895 7.68070 7.69763 8.05871 8.11633 8.62528 9.06505 9.67495 10.36741 11.31625 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.004517 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.683840 B = 6197.025854 C = 6701.190629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.098 3.902 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.082 3.918 17 N -0.608 5.608 18 C 0.526 3.474 19 O -0.544 6.544 20 C -0.068 4.068 21 C 0.042 3.958 22 C -0.185 4.185 23 C -0.202 4.202 24 C -0.017 4.017 25 N -0.552 5.552 26 H 0.412 0.588 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -12.022 -7.352 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.043 4.043 17 N -0.342 5.342 18 C 0.314 3.686 19 O -0.422 6.422 20 C -0.109 4.109 21 C -0.072 4.072 22 C -0.210 4.210 23 C -0.227 4.227 24 C -0.148 4.148 25 N -0.147 5.147 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.238 -11.676 -7.358 13.803 hybrid contribution 0.432 1.426 -0.230 1.508 sum 0.670 -10.250 -7.589 12.771 Atomic orbital electron populations 1.69911 1.04971 1.25450 1.56300 1.24820 0.95667 0.97725 1.01993 0.86197 0.78445 0.83152 0.77906 1.21173 1.21621 1.21065 1.19007 0.90386 0.82104 1.44618 0.90181 1.45246 1.01363 0.99304 1.86295 1.21917 0.84645 0.87294 1.01207 1.24332 0.97715 0.97572 0.80799 0.86933 1.24134 0.96703 0.98917 0.99209 1.23180 0.96551 0.86285 0.90846 0.87557 1.23307 0.79995 0.98864 1.02140 1.49232 1.09393 1.60185 1.15424 1.20008 0.86280 0.77648 0.84693 1.90698 1.15250 1.55939 1.80264 1.20099 0.96065 1.02403 0.92331 1.19594 0.99469 0.92395 0.95705 1.20571 1.01534 0.95735 1.03170 1.20819 1.02886 0.97389 1.01629 1.21730 0.98661 0.90984 1.03403 1.41914 1.30365 1.11680 1.30730 0.75214 0.93527 0.92692 0.93631 0.91598 0.89811 0.91174 0.92728 0.88685 0.87250 0.85169 0.85030 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.56 55.49 0.59 -25.98 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.11 3.02 -156.35 -0.47 -14.58 16 10 C 0.17 4.15 4.76 -1.68 -0.01 4.15 16 11 C 0.10 1.90 5.24 -62.54 -0.33 1.57 16 12 H 0.11 2.16 8.05 -51.93 -0.42 1.74 16 13 C -0.15 -2.50 6.81 -22.32 -0.15 -2.65 16 14 C 0.14 2.52 5.53 -62.56 -0.35 2.17 16 15 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 16 C 0.08 1.34 6.01 -1.67 -0.01 1.33 16 17 N -0.61 -10.96 2.95 -156.77 -0.46 -11.42 16 18 C 0.53 9.50 7.89 -10.99 -0.09 9.41 16 19 O -0.54 -11.83 16.38 5.56 0.09 -11.74 16 20 C -0.07 -0.94 5.53 -29.04 -0.16 -1.10 16 21 C 0.04 0.60 5.66 -81.79 -0.46 0.14 16 22 C -0.19 -2.69 10.77 -39.78 -0.43 -3.12 16 23 C -0.20 -2.67 10.86 -39.78 -0.43 -3.11 16 24 C -0.02 -0.20 11.94 -16.75 -0.20 -0.40 16 25 N -0.55 -7.16 6.07 -9.12 -0.06 -7.22 16 26 H 0.41 4.46 8.96 -40.82 -0.37 4.09 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.06 1.45 7.46 -51.93 -0.39 1.06 16 29 H 0.05 1.25 7.68 -51.93 -0.40 0.85 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -33.01 316.16 -8.78 -41.79 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.34 Total: 6.12 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.87 Total: 1.90 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.40 Total: -59.21 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.01 -8.78 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032792712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.675 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds