Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00340 * 3 2 1 5 5 H 1.48505 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00440 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.47869 * 126.94823 * 0.04395 * 9 7 2 11 11 C 1.56019 * 105.10550 * 181.96668 * 10 9 7 12 12 H 1.08998 * 116.24579 * 159.67892 * 11 10 9 13 13 C 1.57084 * 99.60544 * 32.80701 * 11 10 9 14 14 C 1.49296 * 126.94151 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15181 * 15.87346 * 14 9 7 16 16 C 1.56020 * 104.08857 * 246.72977 * 14 9 7 17 17 N 1.47870 * 105.10881 * 288.76568 * 16 14 9 18 18 C 1.34765 * 126.94601 * 181.97955 * 17 16 14 19 19 O 1.21282 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00292 * 0.02791 * 18 17 16 21 21 C 1.50693 * 109.47172 * 179.97438 * 20 18 17 22 22 C 1.34850 * 125.89354 * 274.68983 * 21 20 18 23 23 C 1.40899 * 107.41819 * 179.88680 * 22 21 20 24 24 C 1.34851 * 107.41479 * 0.38002 * 23 22 21 25 25 N 1.36341 * 108.22002 * 359.76764 * 24 23 22 26 26 H 0.96998 * 125.63913 * 179.97438 * 25 24 23 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.31728 * 300.87298 * 10 9 7 29 29 H 1.09001 * 110.31344 * 63.06059 * 10 9 7 30 30 H 1.09004 * 112.36733 * 191.71373 * 13 11 10 31 31 H 1.08995 * 112.36895 * 64.27368 * 13 11 10 32 32 H 1.08999 * 110.31874 * 47.67600 * 16 14 9 33 33 H 1.09000 * 110.31203 * 169.85667 * 16 14 9 34 34 H 1.08994 * 109.47027 * 299.99931 * 20 18 17 35 35 H 1.08995 * 109.46730 * 59.99843 * 20 18 17 36 36 H 1.07994 * 126.29041 * 0.03141 * 22 21 20 37 37 H 1.07997 * 126.28908 * 180.12808 * 23 22 21 38 38 H 1.07995 * 125.88910 * 179.80608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0009 11 6 -0.3637 -4.1104 0.0510 12 1 -1.3411 -4.4457 0.3978 13 6 0.8840 -4.5255 0.9104 14 6 1.9104 -3.7617 -0.0005 15 1 2.9644 -3.8351 0.2671 16 6 1.5091 -4.3453 -1.3907 17 7 0.0523 -4.5833 -1.3028 18 6 -0.7398 -5.1183 -2.2528 19 8 -1.9268 -5.2565 -2.0455 20 6 -0.1508 -5.5450 -3.5727 21 6 -1.2393 -6.1069 -4.4504 22 6 -1.6835 -7.3801 -4.4418 23 6 -2.7025 -7.4779 -5.4100 24 6 -2.8363 -6.2627 -5.9792 25 7 -1.9409 -5.4171 -5.3943 26 1 -1.8222 -4.4797 -5.6137 27 1 -0.4850 0.8400 0.0004 28 1 -0.5816 -2.0919 0.8762 29 1 -0.5736 -2.1531 -0.9124 30 1 1.0491 -5.6029 0.9083 31 1 0.8449 -4.1198 1.9213 32 1 1.7281 -3.6267 -2.1804 33 1 2.0352 -5.2821 -1.5740 34 1 0.3036 -4.6841 -4.0630 35 1 0.6082 -6.3084 -3.4020 36 1 -1.3257 -8.1776 -3.8075 37 1 -3.2691 -8.3642 -5.6544 38 1 -3.5330 -6.0039 -6.7627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032792712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = 50.462496 kcal Electronic energy + Delta-G solvation = -21358.090683 eV Core-core repulsion = 18202.264789 eV Total energy + Delta-G solvation = -3155.825894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07664 -41.39218 -39.23476 -35.44505 -33.60217 -32.51475 -31.77081 -30.64067 -30.21320 -27.43288 -26.96333 -25.09578 -22.46320 -21.45094 -21.40030 -21.03265 -20.04887 -18.88760 -18.32475 -17.87445 -17.26197 -16.52214 -16.26384 -15.72972 -15.05078 -14.99188 -14.62750 -14.47571 -14.16807 -13.81450 -13.59297 -13.45163 -13.21046 -13.10047 -13.06893 -12.81608 -12.66588 -12.53638 -12.29835 -12.15855 -12.08239 -11.86093 -11.51963 -10.96468 -10.69760 -9.71056 -9.50518 -8.93495 -8.88221 -7.84484 -5.20382 1.28959 1.46889 1.49507 1.55623 1.68026 2.00398 2.26189 2.48764 2.54790 3.33618 3.39792 3.66460 3.78870 3.92401 3.97708 4.06890 4.20606 4.23033 4.45557 4.50890 4.63751 4.65715 4.73816 4.86563 4.87308 4.96687 5.04063 5.16218 5.26477 5.36830 5.43081 5.45486 5.54374 5.64970 6.09806 6.12004 6.25915 6.69058 6.79886 7.02737 7.21869 7.71338 8.41977 9.26466 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.004517 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.683840 B = 6197.025854 C = 6701.190629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.617 5.617 10 C 0.189 3.811 11 C 0.099 3.901 12 H 0.108 0.892 13 C -0.128 4.128 14 C 0.134 3.866 15 H 0.137 0.863 16 C 0.090 3.910 17 N -0.610 5.610 18 C 0.521 3.479 19 O -0.588 6.588 20 C -0.056 4.056 21 C 0.017 3.983 22 C -0.203 4.203 23 C -0.224 4.224 24 C -0.013 4.013 25 N -0.556 5.556 26 H 0.419 0.581 27 H 0.243 0.757 28 H 0.014 0.986 29 H -0.005 1.005 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -13.871 -8.184 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.359 4.359 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.004 4.004 12 H 0.126 0.874 13 C -0.167 4.167 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.034 4.034 17 N -0.344 5.344 18 C 0.310 3.690 19 O -0.469 6.469 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.228 4.228 23 C -0.249 4.249 24 C -0.144 4.144 25 N -0.151 5.151 26 H 0.256 0.744 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.013 0.987 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.533 -13.566 -8.199 16.052 hybrid contribution -0.284 1.945 0.016 1.966 sum 2.249 -11.620 -8.183 14.389 Atomic orbital electron populations 1.70165 1.06677 1.25157 1.58846 1.25657 0.96335 1.01201 1.03180 0.85168 0.76980 0.78882 0.78402 1.20115 1.23127 1.19991 1.19527 0.91317 0.83132 1.41930 0.88524 1.45507 1.01380 1.01192 1.86126 1.21497 0.85061 0.90290 0.96918 1.24123 0.99155 0.94127 0.83003 0.87416 1.24036 0.93785 1.00914 0.97986 1.23630 0.98221 0.83092 0.92282 0.84534 1.23263 0.78999 1.00943 1.00236 1.49321 1.10380 1.59806 1.14857 1.20825 0.85741 0.76678 0.85712 1.90673 1.17312 1.57778 1.81183 1.20094 0.96289 1.03712 0.89486 1.19785 1.00435 0.92767 0.96598 1.20866 1.02094 0.96140 1.03673 1.21172 1.03212 0.98646 1.01860 1.22323 0.98198 0.90545 1.03356 1.42054 1.30297 1.12223 1.30535 0.74352 0.94805 0.96793 0.98674 0.87754 0.90394 0.92563 0.87458 0.87351 0.84100 0.84677 0.83386 0.79042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.22 10.56 21.65 0.23 -57.99 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 44.62 29.55 68.60 2.03 46.65 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.23 -11.98 10.37 84.03 0.87 -11.11 16 8 H 0.10 4.60 7.83 -2.91 -0.02 4.57 16 9 N -0.62 -29.03 3.02 -648.58 -1.96 -30.98 16 10 C 0.19 9.37 4.76 87.16 0.42 9.78 16 11 C 0.10 3.83 5.24 46.93 0.25 4.08 16 12 H 0.11 4.23 8.05 -2.39 -0.02 4.21 16 13 C -0.13 -3.92 6.81 33.45 0.23 -3.69 16 14 C 0.13 4.40 5.53 46.92 0.26 4.66 16 15 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 16 C 0.09 2.60 6.01 87.16 0.52 3.12 16 17 N -0.61 -21.06 2.95 -768.28 -2.26 -23.33 16 18 C 0.52 18.23 7.89 87.66 0.69 18.92 16 19 O -0.59 -25.80 16.38 -3.04 -0.05 -25.85 16 20 C -0.06 -1.40 5.53 29.10 0.16 -1.24 16 21 C 0.02 0.48 5.66 41.08 0.23 0.71 16 22 C -0.20 -5.62 10.77 22.14 0.24 -5.38 16 23 C -0.22 -5.60 10.86 22.14 0.24 -5.36 16 24 C -0.01 -0.29 11.94 83.21 0.99 0.70 16 25 N -0.56 -13.68 6.07 -182.77 -1.11 -14.79 16 26 H 0.42 8.64 8.96 -92.71 -0.83 7.81 16 27 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.01 0.79 7.46 -2.39 -0.02 0.77 16 29 H 0.00 -0.29 7.68 -2.39 -0.02 -0.31 16 30 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -75.81 316.16 2.67 -73.14 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.23 Total: 21.44 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.57 Total: 11.71 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -5.10 Total: -127.09 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.81 2.67 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032792712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.601 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds