Wall clock time and date at job start Mon Mar 30 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99967 * 3 2 1 6 6 H 1.48497 * 109.47043 * 60.00414 * 3 2 1 7 7 C 1.38814 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.46761 * 125.33243 * 0.02580 * 9 7 2 11 11 C 1.53979 * 106.67587 * 198.42748 * 10 9 7 12 12 H 1.09004 * 112.80285 * 209.36543 * 11 10 9 13 13 C 1.53678 * 109.29841 * 82.34337 * 11 10 9 14 14 N 1.46653 * 107.97063 * 233.06380 * 13 11 10 15 15 C 1.34778 * 125.32994 * 179.29395 * 14 13 11 16 16 O 1.21694 * 120.00323 * 354.61754 * 15 14 13 17 17 C 1.46677 * 119.99779 * 174.62266 * 15 14 13 18 18 C 1.37879 * 126.23104 * 173.60199 * 17 15 14 19 19 C 1.39842 * 107.08325 * 180.02562 * 18 17 15 20 20 C 1.35457 * 107.86447 * 0.02562 * 19 18 17 21 21 N 1.35535 * 108.87084 * 359.73067 * 20 19 18 22 22 H 0.97002 * 125.67713 * 180.29697 * 21 20 19 23 23 C 1.46756 * 109.33358 * 359.28842 * 14 13 11 24 24 C 1.53978 * 106.67694 * 18.45191 * 23 14 13 25 25 H 1.09000 * 113.34952 * 209.06748 * 24 23 14 26 26 C 1.46654 * 125.33689 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00611 * 0.02562 * 1 2 3 28 28 H 1.08997 * 110.01762 * 317.73223 * 10 9 7 29 29 H 1.09007 * 110.01467 * 79.12310 * 10 9 7 30 30 H 1.08998 * 109.76311 * 352.69172 * 13 11 10 31 31 H 1.08997 * 109.76854 * 113.42531 * 13 11 10 32 32 H 1.07991 * 126.45955 * 359.97438 * 18 17 15 33 33 H 1.07996 * 126.06511 * 179.97438 * 19 18 17 34 34 H 1.08000 * 125.55991 * 179.97438 * 20 19 18 35 35 H 1.09002 * 110.01750 * 259.14721 * 23 14 13 36 36 H 1.08997 * 110.01340 * 137.75652 * 23 14 13 37 37 H 1.09004 * 109.77070 * 59.68306 * 26 9 7 38 38 H 1.08997 * 109.76727 * 298.94294 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1356 -2.5245 -0.0005 11 6 -0.4455 -3.9590 0.4657 12 1 -1.3734 -4.3482 0.0467 13 6 -0.4007 -4.0148 2.0008 14 7 0.5116 -5.0959 2.3878 15 6 0.8186 -5.4408 3.6541 16 8 0.4023 -4.7754 4.5840 17 6 1.6545 -6.6183 3.9112 18 6 2.1476 -7.0160 5.1359 19 6 2.8892 -8.1820 4.9212 20 6 2.8379 -8.4695 3.5985 21 7 2.0860 -7.5301 2.9745 22 1 1.8867 -7.5036 2.0256 23 6 1.0377 -5.7433 1.1804 24 6 0.8073 -4.7617 0.0167 25 1 0.6738 -5.2562 -0.9455 26 6 1.9376 -3.7208 -0.0005 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5776 -1.8047 0.6883 29 1 -0.5251 -2.3668 -1.0064 30 1 -0.0355 -3.0659 2.3937 31 1 -1.3981 -4.2163 2.3916 32 1 1.9912 -6.5201 6.0823 33 1 3.4109 -8.7516 5.6759 34 1 3.3146 -9.3121 3.1199 35 1 0.5037 -6.6751 0.9939 36 1 2.1033 -5.9404 1.2970 37 1 2.5621 -3.8398 0.8850 38 1 2.5426 -3.8487 -0.8982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048677186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:17 Heat of formation + Delta-G solvation = 54.801491 kcal Electronic energy + Delta-G solvation = -21639.815565 eV Core-core repulsion = 18484.177824 eV Total energy + Delta-G solvation = -3155.637741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41284 -39.81924 -37.93621 -35.06961 -32.38232 -31.28601 -30.34423 -29.81616 -29.00730 -25.70923 -25.59177 -23.57338 -21.48533 -20.80958 -20.10732 -20.01844 -19.46289 -17.82038 -16.75646 -16.30481 -15.93623 -15.05177 -14.75667 -14.64903 -13.90906 -13.78007 -13.56564 -13.23158 -13.09504 -12.67295 -12.60304 -12.35268 -12.19080 -11.96654 -11.69359 -11.41994 -10.99996 -10.85173 -10.53412 -10.13075 -10.08085 -9.94356 -9.86017 -9.67000 -9.06970 -8.68299 -8.52485 -8.18831 -6.88535 -5.72685 -3.11405 1.51623 2.70803 2.98662 3.21337 3.38650 3.44436 3.46708 3.52229 4.42784 4.56543 4.61656 4.91183 4.97558 5.05124 5.26965 5.30257 5.40530 5.44125 5.47916 5.60054 5.72234 5.83230 6.00780 6.02359 6.09760 6.22995 6.33712 6.46434 6.56743 6.66502 6.70302 6.73188 6.89078 7.29353 7.38676 7.58111 7.66950 7.77487 8.27531 8.30723 9.18031 9.78304 10.40417 11.34179 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.004752 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.646317 B = 5890.914515 C = 6059.187359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.169 3.831 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.123 3.877 14 N -0.608 5.608 15 C 0.598 3.402 16 O -0.530 6.530 17 C -0.043 4.043 18 C -0.113 4.113 19 C -0.212 4.212 20 C 0.012 3.988 21 N -0.543 5.543 22 H 0.417 0.583 23 C 0.100 3.900 24 C -0.107 4.107 25 H 0.100 0.900 26 C 0.144 3.856 27 H 0.253 0.747 28 H 0.098 0.902 29 H 0.021 0.979 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -17.694 2.267 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.325 5.325 10 C 0.044 3.956 11 C -0.143 4.143 12 H 0.108 0.892 13 C 0.001 3.999 14 N -0.341 5.341 15 C 0.388 3.612 16 O -0.406 6.406 17 C -0.157 4.157 18 C -0.139 4.139 19 C -0.237 4.237 20 C -0.124 4.124 21 N -0.143 5.143 22 H 0.259 0.741 23 C -0.024 4.024 24 C -0.127 4.127 25 H 0.118 0.882 26 C 0.018 3.982 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.186 0.814 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.925 -17.060 2.674 17.375 hybrid contribution 0.489 0.704 -0.598 1.045 sum 2.413 -16.356 2.076 16.663 Atomic orbital electron populations 1.69851 1.04877 1.24930 1.57321 1.24780 0.95747 0.97750 1.02049 0.86005 0.78684 0.83558 0.77284 1.20537 1.21703 1.21629 1.19087 0.90530 0.82296 1.43551 0.90432 1.44190 1.01569 0.99790 1.86973 1.21490 0.84858 0.89471 0.99763 1.23228 0.97012 1.00655 0.93413 0.89216 1.21901 0.92268 0.90755 0.94985 1.48145 1.46318 1.35183 1.04502 1.16708 0.79814 0.83113 0.81581 1.90840 1.54228 1.53048 1.42509 1.20481 1.09010 0.95936 0.90240 1.21310 0.99362 0.97026 0.96235 1.20878 1.07093 1.00244 0.95457 1.22035 1.00245 0.96156 0.93927 1.42696 1.40051 1.21162 1.10392 0.74063 1.22148 0.98164 0.96118 0.85974 1.22834 0.97608 0.95634 0.96605 0.88203 1.21130 0.93277 0.85844 0.97974 0.93667 0.88374 0.96137 0.89823 0.92123 0.83586 0.84078 0.81372 0.92094 0.91173 0.96016 0.95918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.16 55.49 0.56 -25.95 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.26 10.25 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.87 3.38 -171.89 -0.58 -15.45 16 10 C 0.17 3.91 4.84 -3.39 -0.02 3.89 16 11 C -0.12 -2.14 4.09 -88.47 -0.36 -2.50 16 12 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.12 2.25 6.24 -3.61 -0.02 2.23 16 14 N -0.61 -10.13 3.31 -173.88 -0.58 -10.71 16 15 C 0.60 10.74 7.79 -12.85 -0.10 10.64 16 16 O -0.53 -11.40 17.21 5.19 0.09 -11.31 16 17 C -0.04 -0.64 6.82 -81.98 -0.56 -1.20 16 18 C -0.11 -1.55 10.66 -39.11 -0.42 -1.97 16 19 C -0.21 -2.29 10.81 -39.97 -0.43 -2.72 16 20 C 0.01 0.11 11.89 -16.91 -0.20 -0.09 16 21 N -0.54 -5.94 5.39 -9.39 -0.05 -5.99 16 22 H 0.42 3.69 5.26 -40.82 -0.21 3.47 16 23 C 0.10 1.30 4.36 -3.39 -0.01 1.28 16 24 C -0.11 -1.64 4.09 -88.48 -0.36 -2.00 16 25 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 26 C 0.14 2.85 6.62 -3.61 -0.02 2.83 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.10 2.59 5.83 -51.93 -0.30 2.28 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.87 7.47 -51.93 -0.39 1.48 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 36 H 0.07 0.84 6.23 -51.93 -0.32 0.52 16 37 H 0.02 0.45 7.47 -51.93 -0.39 0.07 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -33.12 305.08 -8.68 -41.79 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.94 Total: 2.22 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.76 Total: 3.68 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.64 Total: -58.09 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.12 -8.68 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048677186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.593 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds