Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99967 * 3 2 1 6 6 H 1.48497 * 109.47043 * 60.00414 * 3 2 1 7 7 C 1.38814 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.46761 * 125.33243 * 0.02580 * 9 7 2 11 11 C 1.53979 * 106.67587 * 198.42748 * 10 9 7 12 12 H 1.09004 * 112.80285 * 209.36543 * 11 10 9 13 13 C 1.53678 * 109.29841 * 82.34337 * 11 10 9 14 14 N 1.46653 * 107.97063 * 233.06380 * 13 11 10 15 15 C 1.34778 * 125.32994 * 179.29395 * 14 13 11 16 16 O 1.21694 * 120.00323 * 354.61754 * 15 14 13 17 17 C 1.46677 * 119.99779 * 174.62266 * 15 14 13 18 18 C 1.37879 * 126.23104 * 173.60199 * 17 15 14 19 19 C 1.39842 * 107.08325 * 180.02562 * 18 17 15 20 20 C 1.35457 * 107.86447 * 0.02562 * 19 18 17 21 21 N 1.35535 * 108.87084 * 359.73067 * 20 19 18 22 22 H 0.97002 * 125.67713 * 180.29697 * 21 20 19 23 23 C 1.46756 * 109.33358 * 359.28842 * 14 13 11 24 24 C 1.53978 * 106.67694 * 18.45191 * 23 14 13 25 25 H 1.09000 * 113.34952 * 209.06748 * 24 23 14 26 26 C 1.46654 * 125.33689 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00611 * 0.02562 * 1 2 3 28 28 H 1.08997 * 110.01762 * 317.73223 * 10 9 7 29 29 H 1.09007 * 110.01467 * 79.12310 * 10 9 7 30 30 H 1.08998 * 109.76311 * 352.69172 * 13 11 10 31 31 H 1.08997 * 109.76854 * 113.42531 * 13 11 10 32 32 H 1.07991 * 126.45955 * 359.97438 * 18 17 15 33 33 H 1.07996 * 126.06511 * 179.97438 * 19 18 17 34 34 H 1.08000 * 125.55991 * 179.97438 * 20 19 18 35 35 H 1.09002 * 110.01750 * 259.14721 * 23 14 13 36 36 H 1.08997 * 110.01340 * 137.75652 * 23 14 13 37 37 H 1.09004 * 109.77070 * 59.68306 * 26 9 7 38 38 H 1.08997 * 109.76727 * 298.94294 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1356 -2.5245 -0.0005 11 6 -0.4455 -3.9590 0.4657 12 1 -1.3734 -4.3482 0.0467 13 6 -0.4007 -4.0148 2.0008 14 7 0.5116 -5.0959 2.3878 15 6 0.8186 -5.4408 3.6541 16 8 0.4023 -4.7754 4.5840 17 6 1.6545 -6.6183 3.9112 18 6 2.1476 -7.0160 5.1359 19 6 2.8892 -8.1820 4.9212 20 6 2.8379 -8.4695 3.5985 21 7 2.0860 -7.5301 2.9745 22 1 1.8867 -7.5036 2.0256 23 6 1.0377 -5.7433 1.1804 24 6 0.8073 -4.7617 0.0167 25 1 0.6738 -5.2562 -0.9455 26 6 1.9376 -3.7208 -0.0005 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5776 -1.8047 0.6883 29 1 -0.5251 -2.3668 -1.0064 30 1 -0.0355 -3.0659 2.3937 31 1 -1.3981 -4.2163 2.3916 32 1 1.9912 -6.5201 6.0823 33 1 3.4109 -8.7516 5.6759 34 1 3.3146 -9.3121 3.1199 35 1 0.5037 -6.6751 0.9939 36 1 2.1033 -5.9404 1.2970 37 1 2.5621 -3.8398 0.8850 38 1 2.5426 -3.8487 -0.8982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048677186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = 31.961913 kcal Electronic energy + Delta-G solvation = -21640.805963 eV Core-core repulsion = 18484.177824 eV Total energy + Delta-G solvation = -3156.628139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42962 -41.10461 -39.38510 -36.72196 -34.18807 -32.43661 -31.68713 -31.36662 -30.13516 -27.45299 -27.09995 -25.09415 -22.74890 -21.89758 -21.59615 -21.03983 -20.85578 -19.26479 -18.44084 -17.60086 -17.23443 -16.82169 -16.19594 -15.92818 -15.57721 -14.88964 -14.71946 -14.58493 -14.43833 -14.18789 -13.75225 -13.61710 -13.50464 -13.35831 -13.14671 -13.09385 -12.82735 -12.78884 -12.01634 -11.95193 -11.79062 -11.58940 -11.45810 -11.28973 -10.75750 -9.99663 -9.80707 -9.15182 -8.89980 -7.84571 -5.24545 0.44401 1.42125 1.43922 1.53258 1.80265 1.86184 2.25706 2.34918 2.45656 3.26681 3.28644 3.44541 3.66514 3.83479 3.88119 4.13140 4.20467 4.26748 4.36619 4.43960 4.48756 4.53728 4.68846 4.78314 4.81236 4.98105 5.04126 5.11885 5.18127 5.28894 5.31306 5.44070 5.56434 5.77535 5.79319 5.94648 6.25723 6.39688 6.56956 6.98451 7.09072 7.77473 8.37037 9.20007 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.004752 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.646317 B = 5890.914515 C = 6059.187359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.622 5.622 10 C 0.174 3.826 11 C -0.107 4.107 12 H 0.128 0.872 13 C 0.128 3.872 14 N -0.610 5.610 15 C 0.590 3.410 16 O -0.587 6.587 17 C -0.080 4.080 18 C -0.127 4.127 19 C -0.226 4.226 20 C 0.047 3.953 21 N -0.531 5.531 22 H 0.429 0.571 23 C 0.100 3.900 24 C -0.090 4.090 25 H 0.144 0.856 26 C 0.136 3.864 27 H 0.247 0.753 28 H 0.055 0.945 29 H -0.001 1.001 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.165 0.835 34 H 0.220 0.780 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.009 0.991 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -21.579 0.867 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.348 5.348 10 C 0.049 3.951 11 C -0.127 4.127 12 H 0.146 0.854 13 C 0.005 3.995 14 N -0.342 5.342 15 C 0.383 3.617 16 O -0.468 6.468 17 C -0.192 4.192 18 C -0.154 4.154 19 C -0.249 4.249 20 C -0.090 4.090 21 N -0.132 5.132 22 H 0.273 0.727 23 C -0.022 4.022 24 C -0.109 4.109 25 H 0.162 0.838 26 C 0.011 3.989 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.237 0.763 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.026 0.974 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.359 -20.989 1.224 21.291 hybrid contribution 0.138 1.854 -0.125 1.863 sum 3.497 -19.135 1.100 19.483 Atomic orbital electron populations 1.70103 1.06068 1.25028 1.58364 1.25577 0.96633 1.00835 1.02544 0.85056 0.78126 0.79672 0.76772 1.19266 1.21380 1.22263 1.19420 0.90878 0.83955 1.42823 0.90543 1.44483 1.02564 1.01009 1.86779 1.21212 0.84026 0.92424 0.97476 1.23080 0.99930 0.97325 0.92382 0.85426 1.21631 0.92863 0.89235 0.95729 1.48206 1.45887 1.34640 1.05487 1.17263 0.79575 0.83694 0.81215 1.90792 1.56615 1.55203 1.44186 1.19977 1.11096 0.96510 0.91652 1.21516 0.99876 0.98294 0.95736 1.21221 1.07148 0.99377 0.97176 1.22863 0.97211 0.95597 0.93324 1.42635 1.39665 1.20428 1.10511 0.72685 1.22418 0.99852 0.96855 0.83051 1.22901 0.93763 0.94663 0.99607 0.83829 1.21375 0.94995 0.84941 0.97598 0.94347 0.92709 0.98332 0.95414 0.91322 0.85037 0.81699 0.76309 0.87013 0.89664 0.97350 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.16 21.65 0.22 -56.86 16 2 C -0.06 -3.63 5.48 84.86 0.47 -3.17 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.77 10.25 84.03 0.86 -12.90 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -31.63 3.38 -697.74 -2.35 -33.99 16 10 C 0.17 8.30 4.84 86.66 0.42 8.72 16 11 C -0.11 -3.61 4.09 -9.40 -0.04 -3.65 16 12 H 0.13 3.40 8.14 -2.38 -0.02 3.38 16 13 C 0.13 4.82 6.24 86.58 0.54 5.36 16 14 N -0.61 -19.87 3.31 -822.26 -2.72 -22.59 16 15 C 0.59 21.53 7.79 86.45 0.67 22.21 16 16 O -0.59 -26.90 17.21 -4.33 -0.07 -26.98 16 17 C -0.08 -2.24 6.82 40.35 0.28 -1.97 16 18 C -0.13 -3.39 10.66 22.57 0.24 -3.15 16 19 C -0.23 -4.09 10.81 22.02 0.24 -3.85 16 20 C 0.05 0.62 11.89 83.48 0.99 1.62 16 21 N -0.53 -9.38 5.39 -183.61 -0.99 -10.37 16 22 H 0.43 5.24 5.26 -92.71 -0.49 4.75 16 23 C 0.10 2.21 4.36 86.66 0.38 2.59 16 24 C -0.09 -2.45 4.09 -9.41 -0.04 -2.49 16 25 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 26 C 0.14 5.24 6.62 86.58 0.57 5.81 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.05 3.09 5.83 -2.39 -0.01 3.08 16 29 H 0.00 -0.07 8.14 -2.38 -0.02 -0.08 16 30 H 0.03 1.34 7.47 -2.39 -0.02 1.32 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.13 3.74 8.06 -2.92 -0.02 3.72 16 33 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.11 1.48 7.54 -2.39 -0.02 1.46 16 36 H 0.09 1.68 6.23 -2.39 -0.01 1.66 16 37 H 0.01 0.35 7.47 -2.38 -0.02 0.33 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -80.39 305.08 2.28 -78.11 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.59 Total: 8.68 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.58 Total: 15.12 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.84 Total: -123.80 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -80.39 2.28 -78.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048677186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.073 kcal (2) G-P(sol) polarization free energy of solvation -80.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds