Wall clock time and date at job start Mon Mar 30 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48508 * 109.46950 * 274.98231 * 3 2 1 5 5 H 1.48494 * 109.47492 * 34.98175 * 3 2 1 6 6 H 1.48503 * 109.47344 * 154.98473 * 3 2 1 7 7 C 1.38811 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00117 * 187.06599 * 7 2 1 9 9 N 1.36938 * 120.00005 * 7.06946 * 7 2 1 10 10 C 1.47144 * 125.58154 * 354.81072 * 9 7 2 11 11 C 1.54630 * 107.37953 * 179.07125 * 10 9 7 12 12 C 1.53511 * 102.70219 * 339.38931 * 11 10 9 13 13 C 1.51784 * 117.00175 * 164.16580 * 12 11 10 14 14 N 1.47385 * 87.59717 * 92.95808 * 13 12 11 15 15 C 1.34776 * 135.85184 * 205.59321 * 14 13 12 16 16 O 1.21693 * 120.00578 * 0.02562 * 15 14 13 17 17 C 1.46680 * 119.99736 * 180.02562 * 15 14 13 18 18 C 1.37873 * 126.23247 * 179.69260 * 17 15 14 19 19 C 1.39838 * 107.08875 * 179.84989 * 18 17 15 20 20 C 1.35448 * 107.85976 * 0.41084 * 19 18 17 21 21 N 1.35532 * 108.87418 * 359.74466 * 20 19 18 22 22 H 0.97003 * 125.67886 * 179.97438 * 21 20 19 23 23 C 1.47389 * 88.29659 * 25.63267 * 14 13 12 24 24 C 1.47757 * 125.58249 * 174.79546 * 9 7 2 25 25 H 0.96999 * 119.99823 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.86750 * 59.62075 * 10 9 7 27 27 H 1.09007 * 109.86528 * 298.52275 * 10 9 7 28 28 H 1.08998 * 110.76441 * 221.08508 * 11 10 9 29 29 H 1.09001 * 110.76638 * 97.69023 * 11 10 9 30 30 H 1.08998 * 113.53897 * 338.26109 * 13 12 11 31 31 H 1.08994 * 113.54173 * 207.66121 * 13 12 11 32 32 H 1.08002 * 126.45675 * 359.97438 * 18 17 15 33 33 H 1.07993 * 126.07071 * 180.16445 * 19 18 17 34 34 H 1.07997 * 125.56503 * 179.71919 * 20 19 18 35 35 H 1.08998 * 113.54575 * 88.99005 * 23 14 13 36 36 H 1.09000 * 113.54543 * 219.60640 * 23 14 13 37 37 H 1.09006 * 110.40501 * 83.51353 * 24 9 7 38 38 H 1.09006 * 110.40017 * 321.09600 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1156 9 7 1.3333 -2.3836 -0.1449 10 6 -0.1297 -2.5307 -0.2020 11 6 -0.4355 -4.0341 -0.3954 12 6 0.8852 -4.5775 -0.9585 13 6 1.0801 -6.0825 -0.9276 14 7 0.5284 -6.1196 -2.2938 15 6 -0.1113 -7.0303 -3.0540 16 8 -0.3495 -8.1368 -2.6070 17 6 -0.5204 -6.6877 -4.4203 18 6 -1.1729 -7.5169 -5.3077 19 6 -1.3692 -6.7868 -6.4841 20 6 -0.8366 -5.5548 -6.3021 21 7 -0.3177 -5.4817 -5.0522 22 1 0.1234 -4.7084 -4.6671 23 6 0.9815 -4.7279 -2.4674 24 6 1.9523 -3.7194 -0.2705 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5268 -1.9609 -1.0421 27 1 -0.5739 -2.1791 0.7293 28 1 -1.2470 -4.1746 -1.1094 29 1 -0.6723 -4.5061 0.5582 30 1 0.4546 -6.5874 -0.1916 31 1 2.1257 -6.3849 -0.8719 32 1 -1.4772 -8.5374 -5.1275 33 1 -1.8551 -7.1434 -7.3802 34 1 -0.8267 -4.7604 -7.0337 35 1 1.9997 -4.6457 -2.8478 36 1 0.2744 -4.1048 -3.0150 37 1 2.1880 -4.1231 0.7143 38 1 2.8510 -3.6654 -0.8850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072463433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:06 Heat of formation + Delta-G solvation = 83.610580 kcal Electronic energy + Delta-G solvation = -21246.021502 eV Core-core repulsion = 18091.633017 eV Total energy + Delta-G solvation = -3154.388485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43636 -40.36690 -38.03221 -35.76487 -32.35850 -31.22333 -30.14359 -29.18370 -28.39511 -26.22178 -25.83930 -23.91164 -21.94877 -20.57730 -20.35852 -20.01423 -18.64527 -17.81107 -16.85152 -16.19437 -15.72117 -15.41252 -14.77884 -14.46116 -14.40815 -13.93686 -13.73625 -13.33526 -13.14445 -12.69472 -12.53578 -12.40977 -12.27953 -12.04558 -11.94566 -11.12245 -10.98291 -10.78516 -10.55936 -10.32243 -10.17364 -9.99574 -9.83466 -9.70958 -9.09716 -8.74768 -8.66445 -8.26335 -6.93427 -5.81420 -3.14453 1.45618 2.67975 2.76911 3.08255 3.33605 3.39498 3.41630 3.42598 4.33566 4.44912 4.55386 4.84613 4.95788 5.11740 5.26651 5.29699 5.39928 5.41366 5.44871 5.56058 5.67397 5.70263 5.73728 5.99299 6.02832 6.12228 6.14115 6.36064 6.41568 6.54937 6.60079 6.66019 6.86049 7.29154 7.46332 7.51433 7.70617 7.73260 8.14894 8.16657 9.11990 9.72217 10.37778 11.30481 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.004472 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.336299 B = 6259.491810 C = 6920.953966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.118 4.118 12 C -0.102 4.102 13 C 0.122 3.878 14 N -0.646 5.646 15 C 0.614 3.386 16 O -0.538 6.538 17 C -0.047 4.047 18 C -0.113 4.113 19 C -0.214 4.214 20 C 0.019 3.981 21 N -0.538 5.538 22 H 0.418 0.582 23 C 0.111 3.889 24 C 0.153 3.847 25 H 0.253 0.747 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -10.001 -9.595 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.156 4.156 12 C -0.104 4.104 13 C -0.001 4.001 14 N -0.380 5.380 15 C 0.406 3.594 16 O -0.415 6.415 17 C -0.160 4.160 18 C -0.139 4.139 19 C -0.239 4.239 20 C -0.117 4.117 21 N -0.136 5.136 22 H 0.258 0.742 23 C -0.011 4.011 24 C 0.027 3.973 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.314 -10.400 -9.348 13.987 hybrid contribution 0.618 1.387 0.024 1.519 sum 0.303 -9.013 -9.324 12.971 Atomic orbital electron populations 1.69973 1.04944 1.25156 1.56578 1.24814 0.95668 0.97679 1.02000 0.86132 0.78744 0.83598 0.77498 1.21630 1.21737 1.20582 1.19053 0.91161 0.82430 1.43333 0.90323 1.44549 1.01545 1.00739 1.86302 1.21241 0.84405 0.87992 1.01005 1.22488 0.93862 0.99574 0.99684 1.22134 1.00219 0.93798 0.94205 1.22775 0.99026 0.95344 0.82905 1.49727 1.56628 1.14669 1.17013 1.16571 0.77409 0.82930 0.82516 1.90821 1.57312 1.20902 1.72492 1.20406 1.12881 0.88055 0.94678 1.21292 1.00579 0.99540 0.92516 1.20871 1.08773 0.94361 0.99851 1.22082 1.02077 1.00144 0.87426 1.42441 1.45465 1.13067 1.12605 0.74194 1.22956 0.99750 0.80302 0.98130 1.21149 0.93238 0.86285 0.96660 0.93684 0.93428 0.93858 0.92152 0.91543 0.90106 0.89548 0.83618 0.83988 0.81245 0.89166 0.90865 0.95371 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.89 10.35 55.49 0.57 -25.32 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.16 29.56 -169.99 -5.02 16.14 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -6.08 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 9 N -0.60 -14.24 3.41 -170.53 -0.58 -14.82 16 10 C 0.18 4.04 5.40 -2.83 -0.02 4.02 16 11 C -0.12 -2.07 6.40 -25.61 -0.16 -2.23 16 12 C -0.10 -1.58 1.06 -155.29 -0.16 -1.75 16 13 C 0.12 1.69 8.03 -7.48 -0.06 1.63 16 14 N -0.65 -9.47 3.70 -187.01 -0.69 -10.16 16 15 C 0.61 10.03 8.04 -12.85 -0.10 9.92 16 16 O -0.54 -10.36 17.65 5.19 0.09 -10.27 16 17 C -0.05 -0.67 7.02 -81.98 -0.58 -1.24 16 18 C -0.11 -1.48 10.65 -39.12 -0.42 -1.90 16 19 C -0.21 -2.31 10.81 -39.98 -0.43 -2.74 16 20 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 21 N -0.54 -6.27 5.91 -9.39 -0.06 -6.32 16 22 H 0.42 4.37 5.89 -40.82 -0.24 4.13 16 23 C 0.11 1.52 6.60 -7.40 -0.05 1.47 16 24 C 0.15 2.80 6.71 -3.22 -0.02 2.78 16 25 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.05 1.19 7.30 -51.93 -0.38 0.82 16 27 H 0.04 1.11 7.60 -51.92 -0.39 0.71 16 28 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.09 1.09 8.07 -51.93 -0.42 0.68 16 36 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -31.67 314.56 -8.51 -40.19 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.11 Total: 2.33 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.45 Total: 3.50 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.75 Total: -56.63 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.67 -8.51 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072463433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.796 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds