Wall clock time and date at job start Mon Mar 30 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48508 * 109.46950 * 274.98231 * 3 2 1 5 5 H 1.48494 * 109.47492 * 34.98175 * 3 2 1 6 6 H 1.48503 * 109.47344 * 154.98473 * 3 2 1 7 7 C 1.38811 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00117 * 187.06599 * 7 2 1 9 9 N 1.36938 * 120.00005 * 7.06946 * 7 2 1 10 10 C 1.47144 * 125.58154 * 354.81072 * 9 7 2 11 11 C 1.54630 * 107.37953 * 179.07125 * 10 9 7 12 12 C 1.53511 * 102.70219 * 339.38931 * 11 10 9 13 13 C 1.51784 * 117.00175 * 164.16580 * 12 11 10 14 14 N 1.47385 * 87.59717 * 92.95808 * 13 12 11 15 15 C 1.34776 * 135.85184 * 205.59321 * 14 13 12 16 16 O 1.21693 * 120.00578 * 0.02562 * 15 14 13 17 17 C 1.46680 * 119.99736 * 180.02562 * 15 14 13 18 18 C 1.37873 * 126.23247 * 179.69260 * 17 15 14 19 19 C 1.39838 * 107.08875 * 179.84989 * 18 17 15 20 20 C 1.35448 * 107.85976 * 0.41084 * 19 18 17 21 21 N 1.35532 * 108.87418 * 359.74466 * 20 19 18 22 22 H 0.97003 * 125.67886 * 179.97438 * 21 20 19 23 23 C 1.47389 * 88.29659 * 25.63267 * 14 13 12 24 24 C 1.47757 * 125.58249 * 174.79546 * 9 7 2 25 25 H 0.96999 * 119.99823 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.86750 * 59.62075 * 10 9 7 27 27 H 1.09007 * 109.86528 * 298.52275 * 10 9 7 28 28 H 1.08998 * 110.76441 * 221.08508 * 11 10 9 29 29 H 1.09001 * 110.76638 * 97.69023 * 11 10 9 30 30 H 1.08998 * 113.53897 * 338.26109 * 13 12 11 31 31 H 1.08994 * 113.54173 * 207.66121 * 13 12 11 32 32 H 1.08002 * 126.45675 * 359.97438 * 18 17 15 33 33 H 1.07993 * 126.07071 * 180.16445 * 19 18 17 34 34 H 1.07997 * 125.56503 * 179.71919 * 20 19 18 35 35 H 1.08998 * 113.54575 * 88.99005 * 23 14 13 36 36 H 1.09000 * 113.54543 * 219.60640 * 23 14 13 37 37 H 1.09006 * 110.40501 * 83.51353 * 24 9 7 38 38 H 1.09006 * 110.40017 * 321.09600 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1156 9 7 1.3333 -2.3836 -0.1449 10 6 -0.1297 -2.5307 -0.2020 11 6 -0.4355 -4.0341 -0.3954 12 6 0.8852 -4.5775 -0.9585 13 6 1.0801 -6.0825 -0.9276 14 7 0.5284 -6.1196 -2.2938 15 6 -0.1113 -7.0303 -3.0540 16 8 -0.3495 -8.1368 -2.6070 17 6 -0.5204 -6.6877 -4.4203 18 6 -1.1729 -7.5169 -5.3077 19 6 -1.3692 -6.7868 -6.4841 20 6 -0.8366 -5.5548 -6.3021 21 7 -0.3177 -5.4817 -5.0522 22 1 0.1234 -4.7084 -4.6671 23 6 0.9815 -4.7279 -2.4674 24 6 1.9523 -3.7194 -0.2705 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5268 -1.9609 -1.0421 27 1 -0.5739 -2.1791 0.7293 28 1 -1.2470 -4.1746 -1.1094 29 1 -0.6723 -4.5061 0.5582 30 1 0.4546 -6.5874 -0.1916 31 1 2.1257 -6.3849 -0.8719 32 1 -1.4772 -8.5374 -5.1275 33 1 -1.8551 -7.1434 -7.3802 34 1 -0.8267 -4.7604 -7.0337 35 1 1.9997 -4.6457 -2.8478 36 1 0.2744 -4.1048 -3.0150 37 1 2.1880 -4.1231 0.7143 38 1 2.8510 -3.6654 -0.8850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072463433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:06 Heat of formation + Delta-G solvation = 63.231558 kcal Electronic energy + Delta-G solvation = -21246.905203 eV Core-core repulsion = 18091.633017 eV Total energy + Delta-G solvation = -3155.272186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46474 -41.49763 -39.33527 -37.36115 -34.14685 -32.21059 -31.47397 -30.71135 -29.62784 -27.45556 -27.28071 -25.59070 -23.01778 -22.15364 -21.44263 -20.98377 -19.99538 -18.94517 -18.60639 -17.42914 -16.92994 -16.76993 -16.43579 -15.86717 -15.58870 -15.45095 -14.75540 -14.47874 -14.28655 -14.17857 -13.79445 -13.71234 -13.50354 -13.38142 -13.19375 -12.89469 -12.78488 -12.31508 -12.01782 -11.99305 -11.86762 -11.75935 -11.30030 -11.12510 -10.66108 -10.01600 -9.90240 -9.18518 -8.86671 -7.83748 -5.17497 0.43039 1.49701 1.49869 1.59034 1.63704 1.82293 2.20076 2.32348 2.51637 3.16127 3.35533 3.44439 3.56911 3.75120 3.99323 4.15004 4.21230 4.34706 4.36340 4.42193 4.47974 4.59166 4.59949 4.65768 4.80438 4.88632 4.98633 5.11417 5.12065 5.16274 5.27724 5.50486 5.64732 5.76464 5.77830 5.95150 6.20863 6.46224 6.55108 6.97877 7.12161 7.79588 8.44100 9.27241 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.004472 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.336299 B = 6259.491810 C = 6920.953966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.189 3.811 11 C -0.104 4.104 12 C -0.096 4.096 13 C 0.127 3.873 14 N -0.645 5.645 15 C 0.611 3.389 16 O -0.579 6.579 17 C -0.081 4.081 18 C -0.123 4.123 19 C -0.222 4.222 20 C 0.037 3.963 21 N -0.536 5.536 22 H 0.422 0.578 23 C 0.117 3.883 24 C 0.152 3.848 25 H 0.245 0.755 26 H 0.016 0.984 27 H 0.002 0.998 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.210 0.790 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -10.253 -11.274 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.064 3.936 11 C -0.142 4.142 12 C -0.097 4.097 13 C 0.005 3.995 14 N -0.378 5.378 15 C 0.404 3.596 16 O -0.460 6.460 17 C -0.194 4.194 18 C -0.150 4.150 19 C -0.246 4.246 20 C -0.100 4.100 21 N -0.134 5.134 22 H 0.263 0.737 23 C -0.005 4.005 24 C 0.027 3.973 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.185 0.815 34 H 0.226 0.774 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.003 -10.664 -11.021 15.368 hybrid contribution 0.219 1.456 0.525 1.563 sum 1.223 -9.208 -10.496 14.016 Atomic orbital electron populations 1.70189 1.06358 1.25155 1.58338 1.25585 0.96408 1.00834 1.02763 0.85140 0.77905 0.79568 0.77221 1.21382 1.22772 1.19192 1.19465 0.91754 0.83613 1.41785 0.89524 1.44818 1.02081 1.02111 1.86081 1.20922 0.84162 0.90888 0.97595 1.22276 0.95378 0.95967 1.00575 1.21930 0.97671 0.94627 0.95499 1.22837 1.00531 0.93486 0.82690 1.49692 1.56205 1.14789 1.17146 1.16865 0.76982 0.82517 0.83275 1.90785 1.59122 1.22547 1.73589 1.20220 1.15227 0.89623 0.94312 1.21531 1.00301 0.99674 0.93517 1.21219 1.09014 0.94436 0.99888 1.22797 0.99513 1.00739 0.86972 1.42460 1.45472 1.12405 1.13049 0.73650 1.23034 1.01191 0.79623 0.96621 1.21305 0.94285 0.84112 0.97592 0.94546 0.96581 0.97977 0.91503 0.90786 0.90215 0.86979 0.84061 0.81523 0.77358 0.86772 0.90574 0.94672 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.17 10.35 21.65 0.22 -54.95 16 2 C -0.06 -3.40 5.48 84.86 0.46 -2.94 16 3 Si 0.97 43.66 29.56 68.60 2.03 45.69 16 4 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.24 -12.37 10.27 84.03 0.86 -11.51 16 8 H 0.09 4.27 7.84 -2.91 -0.02 4.25 16 9 N -0.62 -29.24 3.41 -693.44 -2.36 -31.60 16 10 C 0.19 8.79 5.40 86.81 0.47 9.26 16 11 C -0.10 -3.59 6.40 31.32 0.20 -3.39 16 12 C -0.10 -2.79 1.06 -52.67 -0.06 -2.84 16 13 C 0.13 3.22 8.03 83.67 0.67 3.89 16 14 N -0.64 -17.78 3.70 -863.78 -3.20 -20.97 16 15 C 0.61 19.50 8.04 86.45 0.69 20.19 16 16 O -0.58 -22.43 17.65 -4.33 -0.08 -22.50 16 17 C -0.08 -2.22 7.02 40.35 0.28 -1.93 16 18 C -0.12 -3.11 10.65 22.57 0.24 -2.87 16 19 C -0.22 -4.20 10.81 22.01 0.24 -3.96 16 20 C 0.04 0.61 11.89 83.48 0.99 1.60 16 21 N -0.54 -11.23 5.91 -183.63 -1.09 -12.31 16 22 H 0.42 7.80 5.89 -92.71 -0.55 7.25 16 23 C 0.12 2.92 6.60 83.72 0.55 3.47 16 24 C 0.15 5.26 6.71 86.22 0.58 5.84 16 25 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.02 0.83 7.30 -2.39 -0.02 0.82 16 27 H 0.00 0.11 7.60 -2.38 -0.02 0.09 16 28 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 36 H 0.08 1.88 6.50 -2.39 -0.02 1.86 16 37 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 1.92 8.01 -2.38 -0.02 1.90 16 Total: -1.00 -70.44 314.56 2.25 -68.20 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.52 Total: 13.63 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.19 Total: 14.83 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -6.42 Total: -119.84 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.08 Total: -22.50 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.44 2.25 -68.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072463433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.427 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds