Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47324 * 300.00288 * 3 2 1 6 6 H 1.48505 * 109.47278 * 60.00256 * 3 2 1 7 7 C 1.38817 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.46711 * 125.32301 * 179.97438 * 9 7 2 11 11 C 1.54044 * 106.82946 * 161.81835 * 10 9 7 12 12 H 1.08993 * 113.43651 * 262.67792 * 11 10 9 13 13 C 1.55124 * 108.25689 * 135.80695 * 11 10 9 14 14 C 1.54858 * 101.77978 * 286.09394 * 13 11 10 15 15 N 1.47399 * 104.80929 * 322.81315 * 14 13 11 16 16 C 1.34774 * 125.59283 * 204.60478 * 15 14 13 17 17 O 1.21693 * 120.00394 * 181.61439 * 16 15 14 18 18 C 1.46679 * 119.99507 * 1.89103 * 16 15 14 19 19 C 1.37879 * 126.23254 * 171.35291 * 18 16 15 20 20 C 1.39834 * 107.08393 * 179.88501 * 19 18 16 21 21 C 1.35455 * 107.86659 * 0.38462 * 20 19 18 22 22 N 1.35530 * 108.87248 * 359.76465 * 21 20 19 23 23 H 0.96996 * 125.67964 * 180.02562 * 22 21 20 24 24 C 1.46739 * 108.82154 * 24.87506 * 15 14 13 25 25 H 1.09002 * 111.32693 * 235.85995 * 24 15 14 26 26 C 1.46636 * 125.32661 * 0.02562 * 9 7 2 27 27 H 0.96995 * 120.00087 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.98314 * 42.47791 * 10 9 7 29 29 H 1.08993 * 109.98803 * 281.16441 * 10 9 7 30 30 H 1.08994 * 110.96654 * 167.96754 * 13 11 10 31 31 H 1.08997 * 110.99563 * 44.22897 * 13 11 10 32 32 H 1.08995 * 110.37027 * 203.97890 * 14 13 11 33 33 H 1.09001 * 110.36763 * 81.64503 * 14 13 11 34 34 H 1.08000 * 126.45407 * 0.03202 * 19 18 16 35 35 H 1.08003 * 126.06964 * 180.15023 * 20 19 18 36 36 H 1.07998 * 125.56342 * 179.76174 * 21 20 19 37 37 H 1.09007 * 109.75274 * 300.93266 * 26 9 7 38 38 H 1.09010 * 109.75547 * 61.62464 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9381 -3.7212 -0.0016 11 6 0.8517 -4.7115 0.4589 12 1 0.9107 -4.9576 1.5190 13 6 0.9031 -5.9546 -0.4676 14 6 0.2739 -5.4037 -1.7710 15 7 -0.7941 -4.4941 -1.3186 16 6 -1.8870 -4.1527 -2.0295 17 8 -2.6930 -3.3671 -1.5667 18 6 -2.1081 -4.7326 -3.3585 19 6 -3.2493 -4.6088 -4.1222 20 6 -3.0273 -5.3129 -5.3098 21 6 -1.7853 -5.8500 -5.2485 22 7 -1.2162 -5.5049 -4.0679 23 1 -0.3281 -5.7593 -3.7722 24 6 -0.4692 -4.0162 0.0302 25 1 -1.2755 -4.2305 0.7317 26 6 -0.1345 -2.5241 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 2.7806 -3.7446 0.6895 29 1 2.2730 -3.9765 -1.0069 30 1 0.3052 -6.7697 -0.0601 31 1 1.9315 -6.2741 -0.6358 32 1 -0.1458 -6.2170 -2.3629 33 1 1.0181 -4.8567 -2.3498 34 1 -4.1449 -4.0677 -3.8547 35 1 -3.7240 -5.4141 -6.1288 36 1 -1.3238 -6.4545 -6.0153 37 1 -0.5502 -2.0332 0.8795 38 1 -0.5466 -2.0729 -0.9032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075538301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = 63.956790 kcal Electronic energy + Delta-G solvation = -21931.634576 eV Core-core repulsion = 18776.393838 eV Total energy + Delta-G solvation = -3155.240737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30969 -39.81721 -37.55264 -34.90288 -32.35656 -31.03657 -30.91811 -29.54123 -28.37601 -26.44312 -24.78686 -23.45172 -21.59273 -20.95497 -20.23260 -19.89230 -19.26023 -17.42934 -16.79388 -16.39021 -15.45904 -15.05725 -14.53208 -14.44367 -13.83434 -13.74754 -13.56765 -13.31560 -12.89226 -12.69261 -12.50997 -12.20933 -12.15982 -11.91003 -11.65355 -11.14716 -11.02539 -10.76407 -10.51340 -10.28826 -10.16939 -9.89050 -9.70749 -9.58840 -8.94752 -8.58098 -8.35582 -8.05414 -6.80712 -5.66141 -3.02820 1.68121 2.83341 3.10510 3.34377 3.41888 3.46159 3.49869 3.70933 4.48626 4.56354 4.62053 4.88825 5.05304 5.08026 5.33669 5.38464 5.41724 5.48853 5.54392 5.64479 5.69388 5.78544 5.93031 6.09039 6.14028 6.18853 6.31326 6.43274 6.50154 6.58931 6.76634 6.84264 7.01121 7.40287 7.56745 7.67485 7.87338 7.93571 8.30675 8.55048 9.24732 9.85739 10.48699 11.43716 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.005831 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.174666 B = 4800.762855 C = 5471.280152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.110 4.110 12 H 0.101 0.899 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.604 5.604 16 C 0.598 3.402 17 O -0.516 6.516 18 C -0.038 4.038 19 C -0.116 4.116 20 C -0.212 4.212 21 C 0.007 3.993 22 N -0.545 5.545 23 H 0.417 0.583 24 C 0.117 3.883 25 H 0.081 0.919 26 C 0.174 3.826 27 H 0.253 0.747 28 H 0.035 0.965 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.167 0.833 37 H 0.054 0.946 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -16.404 -6.814 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.130 4.130 12 H 0.119 0.881 13 C -0.160 4.160 14 C -0.035 4.035 15 N -0.338 5.338 16 C 0.387 3.613 17 O -0.391 6.391 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.236 4.236 21 C -0.129 4.129 22 N -0.146 5.146 23 H 0.261 0.739 24 C 0.014 3.986 25 H 0.099 0.901 26 C 0.049 3.951 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.817 -15.729 -6.504 17.040 hybrid contribution 0.921 0.743 -0.088 1.186 sum 0.104 -14.986 -6.591 16.372 Atomic orbital electron populations 1.69998 1.04789 1.25081 1.56150 1.24853 0.95688 0.97747 1.01947 0.86067 0.78607 0.83893 0.77287 1.20542 1.21760 1.21666 1.19040 0.90359 0.82307 1.44750 0.90397 1.44235 1.01458 0.99913 1.87289 1.21296 0.93947 0.86040 0.97164 1.23165 0.95905 0.94412 0.99489 0.88091 1.22737 1.01170 0.97623 0.94461 1.22534 0.90537 0.92331 0.98129 1.48318 1.21028 1.46688 1.17788 1.16665 0.80707 0.81139 0.82795 1.90881 1.44699 1.33750 1.69781 1.20589 0.93257 1.05588 0.95711 1.21300 0.97437 1.01767 0.93736 1.20855 0.97368 1.05476 0.99905 1.22003 0.95856 1.05082 0.89938 1.42886 1.15940 1.40343 1.15459 0.73936 1.22534 0.95935 0.98192 0.81949 0.90132 1.21160 0.84269 0.87287 1.02394 0.93608 0.94642 0.96698 0.90779 0.89713 0.91642 0.90825 0.83598 0.84195 0.81538 0.92774 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 10.24 55.49 0.57 -27.60 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.69 10.25 -15.06 -0.15 -6.84 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.51 3.38 -172.35 -0.58 -16.09 16 10 C 0.14 2.80 6.45 -3.38 -0.02 2.78 16 11 C -0.11 -1.77 4.35 -87.73 -0.38 -2.15 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -1.43 6.35 -24.63 -0.16 -1.58 16 14 C 0.09 1.16 4.99 -2.57 -0.01 1.15 16 15 N -0.60 -10.84 2.99 -164.24 -0.49 -11.33 16 16 C 0.60 11.87 7.39 -12.85 -0.09 11.78 16 17 O -0.52 -12.35 16.70 5.20 0.09 -12.26 16 18 C -0.04 -0.62 6.84 -81.97 -0.56 -1.18 16 19 C -0.12 -1.77 10.66 -39.12 -0.42 -2.19 16 20 C -0.21 -2.55 10.81 -39.98 -0.43 -2.98 16 21 C 0.01 0.07 11.89 -16.91 -0.20 -0.13 16 22 N -0.54 -6.71 5.37 -9.39 -0.05 -6.76 16 23 H 0.42 4.23 5.24 -40.82 -0.21 4.01 16 24 C 0.12 2.31 3.56 -66.61 -0.24 2.07 16 25 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 26 C 0.17 4.47 4.89 -4.00 -0.02 4.45 16 27 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.29 6.52 -51.93 -0.34 -0.04 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.07 0.67 5.51 -51.93 -0.29 0.39 16 33 H 0.07 1.01 7.15 -51.93 -0.37 0.64 16 34 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.05 1.56 7.33 -51.92 -0.38 1.18 16 38 H 0.06 1.67 6.61 -51.92 -0.34 1.33 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -35.37 302.79 -8.57 -43.94 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.86 Total: 3.00 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.78 Total: 4.92 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.56 Total: -61.78 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.37 -8.57 -43.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075538301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.899 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds