Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47324 * 300.00288 * 3 2 1 6 6 H 1.48505 * 109.47278 * 60.00256 * 3 2 1 7 7 C 1.38817 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.46711 * 125.32301 * 179.97438 * 9 7 2 11 11 C 1.54044 * 106.82946 * 161.81835 * 10 9 7 12 12 H 1.08993 * 113.43651 * 262.67792 * 11 10 9 13 13 C 1.55124 * 108.25689 * 135.80695 * 11 10 9 14 14 C 1.54858 * 101.77978 * 286.09394 * 13 11 10 15 15 N 1.47399 * 104.80929 * 322.81315 * 14 13 11 16 16 C 1.34774 * 125.59283 * 204.60478 * 15 14 13 17 17 O 1.21693 * 120.00394 * 181.61439 * 16 15 14 18 18 C 1.46679 * 119.99507 * 1.89103 * 16 15 14 19 19 C 1.37879 * 126.23254 * 171.35291 * 18 16 15 20 20 C 1.39834 * 107.08393 * 179.88501 * 19 18 16 21 21 C 1.35455 * 107.86659 * 0.38462 * 20 19 18 22 22 N 1.35530 * 108.87248 * 359.76465 * 21 20 19 23 23 H 0.96996 * 125.67964 * 180.02562 * 22 21 20 24 24 C 1.46739 * 108.82154 * 24.87506 * 15 14 13 25 25 H 1.09002 * 111.32693 * 235.85995 * 24 15 14 26 26 C 1.46636 * 125.32661 * 0.02562 * 9 7 2 27 27 H 0.96995 * 120.00087 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.98314 * 42.47791 * 10 9 7 29 29 H 1.08993 * 109.98803 * 281.16441 * 10 9 7 30 30 H 1.08994 * 110.96654 * 167.96754 * 13 11 10 31 31 H 1.08997 * 110.99563 * 44.22897 * 13 11 10 32 32 H 1.08995 * 110.37027 * 203.97890 * 14 13 11 33 33 H 1.09001 * 110.36763 * 81.64503 * 14 13 11 34 34 H 1.08000 * 126.45407 * 0.03202 * 19 18 16 35 35 H 1.08003 * 126.06964 * 180.15023 * 20 19 18 36 36 H 1.07998 * 125.56342 * 179.76174 * 21 20 19 37 37 H 1.09007 * 109.75274 * 300.93266 * 26 9 7 38 38 H 1.09010 * 109.75547 * 61.62464 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9381 -3.7212 -0.0016 11 6 0.8517 -4.7115 0.4589 12 1 0.9107 -4.9576 1.5190 13 6 0.9031 -5.9546 -0.4676 14 6 0.2739 -5.4037 -1.7710 15 7 -0.7941 -4.4941 -1.3186 16 6 -1.8870 -4.1527 -2.0295 17 8 -2.6930 -3.3671 -1.5667 18 6 -2.1081 -4.7326 -3.3585 19 6 -3.2493 -4.6088 -4.1222 20 6 -3.0273 -5.3129 -5.3098 21 6 -1.7853 -5.8500 -5.2485 22 7 -1.2162 -5.5049 -4.0679 23 1 -0.3281 -5.7593 -3.7722 24 6 -0.4692 -4.0162 0.0302 25 1 -1.2755 -4.2305 0.7317 26 6 -0.1345 -2.5241 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 2.7806 -3.7446 0.6895 29 1 2.2730 -3.9765 -1.0069 30 1 0.3052 -6.7697 -0.0601 31 1 1.9315 -6.2741 -0.6358 32 1 -0.1458 -6.2170 -2.3629 33 1 1.0181 -4.8567 -2.3498 34 1 -4.1449 -4.0677 -3.8547 35 1 -3.7240 -5.4141 -6.1288 36 1 -1.3238 -6.4545 -6.0153 37 1 -0.5502 -2.0332 0.8795 38 1 -0.5466 -2.0729 -0.9032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075538301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = 38.413829 kcal Electronic energy + Delta-G solvation = -21932.742201 eV Core-core repulsion = 18776.393838 eV Total energy + Delta-G solvation = -3156.348363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.45557 -41.16557 -39.11312 -36.65857 -34.10468 -32.55742 -32.14123 -30.99873 -29.77931 -28.00018 -26.68921 -24.76924 -23.08051 -22.13489 -21.66526 -20.98775 -20.73487 -18.98512 -18.55265 -17.76347 -16.93350 -16.69058 -16.07959 -15.87577 -15.57589 -14.90455 -14.81027 -14.70479 -14.32134 -14.18080 -13.95702 -13.62470 -13.42010 -13.19424 -13.03134 -12.97887 -12.85553 -12.48707 -12.10883 -11.92673 -11.89528 -11.66309 -11.47613 -11.16814 -10.77498 -9.99972 -9.78637 -9.15547 -8.93732 -7.86908 -5.26101 0.47651 1.40286 1.42751 1.53229 1.82029 1.87693 2.26134 2.36577 2.45604 3.29547 3.33572 3.45748 3.71795 3.76296 3.93226 4.09624 4.27912 4.33705 4.35480 4.43694 4.49042 4.53266 4.65864 4.76719 4.85924 5.02403 5.10646 5.11649 5.18980 5.26953 5.36342 5.42218 5.57330 5.74957 5.78889 5.93661 6.15576 6.46697 6.55894 7.03711 7.09349 7.75558 8.37327 9.21848 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.005831 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.174666 B = 4800.762855 C = 5471.280152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.096 4.096 12 H 0.122 0.878 13 C -0.102 4.102 14 C 0.080 3.920 15 N -0.605 5.605 16 C 0.586 3.414 17 O -0.582 6.582 18 C -0.078 4.078 19 C -0.130 4.130 20 C -0.224 4.224 21 C 0.044 3.956 22 N -0.533 5.533 23 H 0.428 0.572 24 C 0.118 3.882 25 H 0.075 0.925 26 C 0.194 3.806 27 H 0.243 0.757 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.167 0.833 36 H 0.222 0.778 37 H 0.002 0.998 38 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -20.137 -8.650 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.266 4.266 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.115 4.115 12 H 0.140 0.860 13 C -0.140 4.140 14 C -0.042 4.042 15 N -0.337 5.337 16 C 0.378 3.622 17 O -0.463 6.463 18 C -0.191 4.191 19 C -0.158 4.158 20 C -0.247 4.247 21 C -0.093 4.093 22 N -0.136 5.136 23 H 0.274 0.726 24 C 0.013 3.987 25 H 0.093 0.907 26 C 0.068 3.932 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.185 0.815 36 H 0.238 0.762 37 H 0.020 0.980 38 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 2.034 -19.543 -8.340 21.346 hybrid contribution 0.070 1.852 0.390 1.894 sum 2.104 -17.692 -7.950 19.510 Atomic orbital electron populations 1.70310 1.06760 1.25004 1.58296 1.25810 0.96448 1.01667 1.02694 0.84969 0.78484 0.79152 0.76492 1.17968 1.22482 1.21943 1.19556 0.91182 0.83551 1.42769 0.89052 1.44551 1.01666 1.01825 1.86993 1.21618 0.95217 0.83854 0.98375 1.23170 0.91264 0.95348 1.01746 0.85969 1.22802 1.03791 0.95747 0.91637 1.22892 0.89241 0.92367 0.99704 1.48361 1.21571 1.46862 1.16924 1.17325 0.80424 0.80426 0.84065 1.90824 1.47096 1.36758 1.71593 1.20076 0.95137 1.08846 0.95053 1.21511 0.96917 1.01993 0.95342 1.21211 0.98948 1.05268 0.99300 1.22879 0.94744 1.02478 0.89180 1.42832 1.15868 1.39335 1.15572 0.72632 1.22270 0.98033 0.94762 0.83636 0.90744 1.20651 0.84372 0.90932 0.97275 0.94815 0.93337 0.95017 0.88052 0.85986 0.88014 0.91103 0.85228 0.81541 0.76157 0.98028 0.98330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.22 10.24 21.65 0.22 -63.00 16 2 C -0.07 -4.45 5.48 84.86 0.47 -3.98 16 3 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 6 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.24 -13.95 10.25 84.04 0.86 -13.08 16 8 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 9 N -0.62 -32.95 3.38 -699.18 -2.36 -35.32 16 10 C 0.13 5.03 6.45 86.69 0.56 5.58 16 11 C -0.10 -2.84 4.35 -8.92 -0.04 -2.88 16 12 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 13 C -0.10 -1.87 6.35 31.96 0.20 -1.67 16 14 C 0.08 1.84 4.99 86.84 0.43 2.27 16 15 N -0.60 -21.96 2.99 -791.77 -2.37 -24.33 16 16 C 0.59 24.61 7.39 86.45 0.64 25.25 16 17 O -0.58 -30.79 16.70 -4.33 -0.07 -30.86 16 18 C -0.08 -2.57 6.84 40.35 0.28 -2.30 16 19 C -0.13 -4.03 10.66 22.57 0.24 -3.78 16 20 C -0.22 -4.77 10.81 22.01 0.24 -4.53 16 21 C 0.04 0.71 11.89 83.48 0.99 1.71 16 22 N -0.53 -11.48 5.37 -183.61 -0.99 -12.46 16 23 H 0.43 6.91 5.24 -92.71 -0.49 6.43 16 24 C 0.12 4.78 3.56 45.72 0.16 4.94 16 25 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 26 C 0.19 10.70 4.89 86.34 0.42 11.12 16 27 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.03 1.12 6.52 -2.39 -0.02 1.10 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.10 1.63 5.51 -2.39 -0.01 1.62 16 33 H 0.07 1.71 7.15 -2.39 -0.02 1.69 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.00 0.10 7.33 -2.38 -0.02 0.08 16 38 H 0.00 -0.10 6.61 -2.38 -0.02 -0.12 16 Total: -1.00 -88.64 302.79 2.51 -86.12 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.60 Total: 11.11 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 5.45 Total: 18.64 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -5.49 Total: -135.10 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.07 Total: -30.86 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -88.64 2.51 -86.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075538301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.538 kcal (2) G-P(sol) polarization free energy of solvation -88.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds