Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47079 * 270.00385 * 3 2 1 5 5 H 1.48505 * 109.47000 * 30.00242 * 3 2 1 6 6 H 1.48496 * 109.46901 * 150.00226 * 3 2 1 7 7 C 1.38816 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99581 * 193.85400 * 7 2 1 9 9 N 1.36936 * 120.00034 * 13.86260 * 7 2 1 10 10 C 1.46618 * 119.89090 * 205.17085 * 9 7 2 11 11 C 1.53103 * 108.00593 * 237.35228 * 10 9 7 12 12 C 1.53018 * 109.44512 * 301.01499 * 11 10 9 13 13 H 1.09004 * 113.83098 * 274.60155 * 12 11 10 14 14 C 1.54648 * 110.83844 * 143.89537 * 12 11 10 15 15 N 1.47809 * 85.79133 * 270.22883 * 14 12 11 16 16 C 1.34766 * 135.01089 * 153.81070 * 15 14 12 17 17 O 1.21697 * 120.00364 * 180.02562 * 16 15 14 18 18 C 1.46677 * 120.00065 * 359.97438 * 16 15 14 19 19 C 1.37880 * 126.23360 * 180.02562 * 18 16 15 20 20 C 1.39833 * 107.08295 * 179.97438 * 19 18 16 21 21 C 1.35449 * 107.86830 * 359.97438 * 20 19 18 22 22 N 1.35538 * 108.87156 * 359.76771 * 21 20 19 23 23 H 0.96995 * 125.67662 * 180.25581 * 22 21 20 24 24 C 1.46817 * 89.97554 * 333.81135 * 15 14 12 25 25 H 1.09009 * 111.56136 * 274.47819 * 24 15 14 26 26 C 1.45684 * 119.89294 * 25.18862 * 9 7 2 27 27 H 0.96992 * 120.00109 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.75778 * 117.71819 * 10 9 7 29 29 H 1.09004 * 109.79270 * 356.99652 * 10 9 7 30 30 H 1.09001 * 109.47413 * 181.02976 * 11 10 9 31 31 H 1.09000 * 109.47920 * 61.00796 * 11 10 9 32 32 H 1.08997 * 113.82477 * 24.45075 * 14 12 11 33 33 H 1.08998 * 113.81893 * 155.88950 * 14 12 11 34 34 H 1.07996 * 126.45494 * 359.97438 * 19 18 16 35 35 H 1.08002 * 126.06524 * 179.97438 * 20 19 18 36 36 H 1.08002 * 125.56719 * 179.97438 * 21 20 19 37 37 H 1.09003 * 108.71180 * 19.74556 * 26 9 7 38 38 H 1.08999 * 108.71295 * 261.72369 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0667 -1.2158 0.2234 9 7 1.3555 -2.3707 -0.2852 10 6 1.8758 -3.6428 0.2253 11 6 2.1255 -4.5660 -0.9703 12 6 0.8166 -4.7747 -1.7348 13 1 0.1965 -5.5775 -1.3357 14 6 1.0765 -4.8632 -3.2567 15 7 0.8975 -3.3960 -3.2624 16 6 1.3305 -2.3860 -4.0426 17 8 1.0070 -1.2403 -3.7900 18 6 2.1925 -2.6674 -5.1955 19 6 2.7071 -1.7381 -6.0744 20 6 3.4692 -2.4393 -7.0140 21 6 3.4087 -3.7554 -6.6994 22 7 2.6405 -3.9068 -5.5931 23 1 2.4382 -4.7486 -5.1557 24 6 0.0524 -3.4951 -2.0660 25 1 -0.9859 -3.7028 -2.3249 26 6 0.1445 -2.3458 -1.0946 27 1 -0.4850 0.8400 0.0004 28 1 1.1459 -4.0971 0.8955 29 1 2.8101 -3.4716 0.7600 30 1 2.4964 -5.5276 -0.6156 31 1 2.8642 -4.1128 -1.6314 32 1 2.0860 -5.1846 -3.5130 33 1 0.3053 -5.4049 -3.8043 34 1 2.5509 -0.6700 -6.0431 35 1 4.0100 -2.0081 -7.8435 36 1 3.8961 -4.5535 -7.2397 37 1 0.1176 -1.4112 -1.6550 38 1 -0.7200 -2.3781 -0.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084183801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 84.355039 kcal Electronic energy + Delta-G solvation = -22198.358339 eV Core-core repulsion = 19044.002136 eV Total energy + Delta-G solvation = -3154.356203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19506 -40.08243 -37.32415 -35.21791 -32.19207 -31.06900 -30.18460 -29.79342 -28.10686 -26.98720 -23.95587 -23.35749 -21.99171 -20.92495 -20.40531 -19.83682 -18.55380 -17.54858 -16.33346 -15.81087 -15.55885 -15.09544 -14.47056 -14.10715 -13.81970 -13.65884 -13.29808 -13.20294 -13.09058 -12.71657 -12.40651 -12.34036 -12.15500 -11.95365 -11.52375 -11.11474 -10.69258 -10.63791 -10.48945 -10.19184 -9.92947 -9.81107 -9.70711 -9.02442 -8.89772 -8.29055 -8.26785 -7.99943 -6.58706 -5.63295 -3.05944 1.76585 2.89659 3.15271 3.24465 3.51144 3.57011 3.60334 3.87195 4.57361 4.64306 4.75297 5.02504 5.11738 5.21610 5.40178 5.43973 5.46683 5.55942 5.60128 5.65623 5.81084 6.02880 6.08622 6.20684 6.24804 6.33032 6.36246 6.49798 6.55514 6.75513 6.87295 6.96693 7.07094 7.45716 7.51954 7.79194 7.96461 8.22106 8.59436 8.74427 9.37506 10.01193 10.48892 11.45009 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.007582 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.765585 B = 3691.862089 C = 4723.428781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.255 4.255 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.105 4.105 13 H 0.089 0.911 14 C 0.085 3.915 15 N -0.632 5.632 16 C 0.604 3.396 17 O -0.503 6.503 18 C -0.033 4.033 19 C -0.119 4.119 20 C -0.211 4.211 21 C 0.004 3.996 22 N -0.542 5.542 23 H 0.412 0.588 24 C 0.127 3.873 25 H 0.074 0.926 26 C 0.164 3.836 27 H 0.252 0.748 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.107 0.893 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -13.910 -10.492 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.157 4.157 12 C -0.124 4.124 13 H 0.107 0.893 14 C -0.039 4.039 15 N -0.369 5.369 16 C 0.393 3.607 17 O -0.377 6.377 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.235 4.235 21 C -0.131 4.131 22 N -0.140 5.140 23 H 0.252 0.748 24 C 0.023 3.977 25 H 0.092 0.908 26 C 0.038 3.962 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.125 0.875 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.254 -13.051 -10.355 16.974 hybrid contribution 0.393 0.299 -0.132 0.511 sum 3.647 -12.751 -10.487 16.908 Atomic orbital electron populations 1.69994 1.05216 1.25348 1.54274 1.24939 0.95298 0.98173 1.00310 0.86304 0.78840 0.83865 0.77811 1.21192 1.21824 1.20694 1.19093 0.91531 0.84470 1.43302 0.91938 1.43466 1.29068 1.01686 1.56453 1.20734 0.97485 0.87319 0.92381 1.21876 0.94782 0.99436 0.99644 1.22854 0.98679 0.97790 0.93088 0.89312 1.23643 1.00115 0.82135 0.98019 1.49783 1.51872 1.05478 1.29775 1.16602 0.79870 0.84257 0.79970 1.90925 1.57384 1.19506 1.69895 1.20767 1.07696 0.84976 1.01232 1.21324 0.99266 0.99083 0.94858 1.20839 1.06782 0.92742 1.03169 1.21938 1.00697 0.98771 0.91721 1.42375 1.39533 1.08501 1.23615 0.74809 1.22718 0.93147 0.96927 0.84884 0.90832 1.20152 0.88920 0.96109 0.91034 0.93747 0.96135 0.92496 0.92678 0.92180 0.91517 0.90150 0.83637 0.84243 0.81658 0.87488 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 10.91 55.49 0.61 -27.12 16 2 C 0.01 0.34 4.96 -17.43 -0.09 0.25 16 3 Si 0.90 23.65 29.58 -169.99 -5.03 18.62 16 4 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -7.37 9.55 -15.06 -0.14 -7.51 16 8 H 0.06 1.79 7.84 -52.49 -0.41 1.38 16 9 N -0.58 -15.02 3.02 -175.07 -0.53 -15.54 16 10 C 0.15 3.04 6.47 -3.92 -0.03 3.01 16 11 C -0.12 -1.93 5.66 -26.67 -0.15 -2.08 16 12 C -0.10 -1.55 4.39 -89.97 -0.40 -1.95 16 13 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.08 1.07 6.80 -3.00 -0.02 1.05 16 15 N -0.63 -11.55 3.34 -175.56 -0.59 -12.14 16 16 C 0.60 12.72 7.95 -12.86 -0.10 12.61 16 17 O -0.50 -13.17 16.00 5.19 0.08 -13.09 16 18 C -0.03 -0.57 7.01 -81.98 -0.57 -1.15 16 19 C -0.12 -1.97 10.65 -39.12 -0.42 -2.39 16 20 C -0.21 -2.72 10.81 -39.98 -0.43 -3.15 16 21 C 0.00 0.04 11.89 -16.91 -0.20 -0.16 16 22 N -0.54 -6.90 5.90 -9.39 -0.06 -6.96 16 23 H 0.41 4.19 5.78 -40.82 -0.24 3.96 16 24 C 0.13 2.42 4.23 -69.60 -0.29 2.12 16 25 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 26 C 0.16 4.10 4.61 -5.60 -0.03 4.08 16 27 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 32 H 0.07 0.71 6.26 -51.93 -0.33 0.39 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.15 2.47 8.06 -52.49 -0.42 2.04 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.11 3.17 4.83 -51.93 -0.25 2.92 16 38 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -35.61 306.51 -8.72 -44.33 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.96 Total: 2.53 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.87 Total: 4.74 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.57 Total: -61.76 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.03 Total: 18.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.61 -8.72 -44.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084183801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.686 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds