Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47079 * 270.00385 * 3 2 1 5 5 H 1.48505 * 109.47000 * 30.00242 * 3 2 1 6 6 H 1.48496 * 109.46901 * 150.00226 * 3 2 1 7 7 C 1.38816 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99581 * 193.85400 * 7 2 1 9 9 N 1.36936 * 120.00034 * 13.86260 * 7 2 1 10 10 C 1.46618 * 119.89090 * 205.17085 * 9 7 2 11 11 C 1.53103 * 108.00593 * 237.35228 * 10 9 7 12 12 C 1.53018 * 109.44512 * 301.01499 * 11 10 9 13 13 H 1.09004 * 113.83098 * 274.60155 * 12 11 10 14 14 C 1.54648 * 110.83844 * 143.89537 * 12 11 10 15 15 N 1.47809 * 85.79133 * 270.22883 * 14 12 11 16 16 C 1.34766 * 135.01089 * 153.81070 * 15 14 12 17 17 O 1.21697 * 120.00364 * 180.02562 * 16 15 14 18 18 C 1.46677 * 120.00065 * 359.97438 * 16 15 14 19 19 C 1.37880 * 126.23360 * 180.02562 * 18 16 15 20 20 C 1.39833 * 107.08295 * 179.97438 * 19 18 16 21 21 C 1.35449 * 107.86830 * 359.97438 * 20 19 18 22 22 N 1.35538 * 108.87156 * 359.76771 * 21 20 19 23 23 H 0.96995 * 125.67662 * 180.25581 * 22 21 20 24 24 C 1.46817 * 89.97554 * 333.81135 * 15 14 12 25 25 H 1.09009 * 111.56136 * 274.47819 * 24 15 14 26 26 C 1.45684 * 119.89294 * 25.18862 * 9 7 2 27 27 H 0.96992 * 120.00109 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.75778 * 117.71819 * 10 9 7 29 29 H 1.09004 * 109.79270 * 356.99652 * 10 9 7 30 30 H 1.09001 * 109.47413 * 181.02976 * 11 10 9 31 31 H 1.09000 * 109.47920 * 61.00796 * 11 10 9 32 32 H 1.08997 * 113.82477 * 24.45075 * 14 12 11 33 33 H 1.08998 * 113.81893 * 155.88950 * 14 12 11 34 34 H 1.07996 * 126.45494 * 359.97438 * 19 18 16 35 35 H 1.08002 * 126.06524 * 179.97438 * 20 19 18 36 36 H 1.08002 * 125.56719 * 179.97438 * 21 20 19 37 37 H 1.09003 * 108.71180 * 19.74556 * 26 9 7 38 38 H 1.08999 * 108.71295 * 261.72369 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0667 -1.2158 0.2234 9 7 1.3555 -2.3707 -0.2852 10 6 1.8758 -3.6428 0.2253 11 6 2.1255 -4.5660 -0.9703 12 6 0.8166 -4.7747 -1.7348 13 1 0.1965 -5.5775 -1.3357 14 6 1.0765 -4.8632 -3.2567 15 7 0.8975 -3.3960 -3.2624 16 6 1.3305 -2.3860 -4.0426 17 8 1.0070 -1.2403 -3.7900 18 6 2.1925 -2.6674 -5.1955 19 6 2.7071 -1.7381 -6.0744 20 6 3.4692 -2.4393 -7.0140 21 6 3.4087 -3.7554 -6.6994 22 7 2.6405 -3.9068 -5.5931 23 1 2.4382 -4.7486 -5.1557 24 6 0.0524 -3.4951 -2.0660 25 1 -0.9859 -3.7028 -2.3249 26 6 0.1445 -2.3458 -1.0946 27 1 -0.4850 0.8400 0.0004 28 1 1.1459 -4.0971 0.8955 29 1 2.8101 -3.4716 0.7600 30 1 2.4964 -5.5276 -0.6156 31 1 2.8642 -4.1128 -1.6314 32 1 2.0860 -5.1846 -3.5130 33 1 0.3053 -5.4049 -3.8043 34 1 2.5509 -0.6700 -6.0431 35 1 4.0100 -2.0081 -7.8435 36 1 3.8961 -4.5535 -7.2397 37 1 0.1176 -1.4112 -1.6550 38 1 -0.7200 -2.3781 -0.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084183801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 58.183841 kcal Electronic energy + Delta-G solvation = -22199.493207 eV Core-core repulsion = 19044.002136 eV Total energy + Delta-G solvation = -3155.491071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39186 -41.36842 -38.92522 -37.07575 -34.03818 -32.23200 -31.96181 -31.21419 -29.48115 -28.57638 -25.79780 -24.87211 -23.33697 -22.51088 -21.49512 -20.99572 -19.96656 -19.25265 -17.97014 -17.37777 -17.14243 -16.45907 -16.18208 -15.73829 -15.39741 -15.04278 -14.79366 -14.55838 -14.53397 -14.26343 -13.99013 -13.62049 -13.46853 -13.21557 -13.20548 -12.79088 -12.73186 -12.40663 -12.25059 -12.01089 -11.79406 -11.54567 -11.33675 -10.77191 -10.42667 -9.97575 -9.69297 -9.12586 -8.69807 -7.87199 -5.31096 0.52904 1.33061 1.42211 1.44692 1.83029 1.86602 2.22457 2.45811 2.46787 3.27062 3.39002 3.55206 3.70074 3.93463 4.08684 4.24533 4.36458 4.41831 4.42372 4.45708 4.56686 4.65558 4.67858 4.75682 4.88630 5.03432 5.06007 5.12217 5.25827 5.28860 5.40644 5.54352 5.66371 5.78555 5.82971 5.93661 6.38303 6.58267 6.82580 7.17218 7.24518 7.94173 8.32732 9.17176 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.007582 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.765585 B = 3691.862089 C = 4723.428781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.955 3.045 4 H -0.303 1.303 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.258 4.258 8 H 0.061 0.939 9 N -0.602 5.602 10 C 0.137 3.863 11 C -0.106 4.106 12 C -0.093 4.093 13 H 0.133 0.867 14 C 0.099 3.901 15 N -0.638 5.638 16 C 0.591 3.409 17 O -0.583 6.583 18 C -0.070 4.070 19 C -0.142 4.142 20 C -0.225 4.225 21 C 0.045 3.955 22 N -0.525 5.525 23 H 0.427 0.573 24 C 0.110 3.890 25 H 0.091 0.909 26 C 0.177 3.823 27 H 0.244 0.756 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.165 0.835 36 H 0.224 0.776 37 H 0.052 0.948 38 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -18.686 -12.221 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.784 3.216 4 H -0.231 1.231 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.326 5.326 10 C 0.012 3.988 11 C -0.145 4.145 12 C -0.111 4.111 13 H 0.151 0.849 14 C -0.021 4.021 15 N -0.373 5.373 16 C 0.383 3.617 17 O -0.463 6.463 18 C -0.184 4.184 19 C -0.169 4.169 20 C -0.249 4.249 21 C -0.091 4.091 22 N -0.125 5.125 23 H 0.269 0.731 24 C 0.006 3.994 25 H 0.109 0.891 26 C 0.050 3.950 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.182 0.818 36 H 0.240 0.760 37 H 0.071 0.929 38 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 5.208 -17.944 -12.055 22.236 hybrid contribution -0.156 1.702 0.380 1.751 sum 5.052 -16.242 -11.675 20.631 Atomic orbital electron populations 1.70164 1.06425 1.25151 1.56167 1.25650 0.96075 1.01116 1.01361 0.85448 0.78722 0.80703 0.76755 1.23086 1.21350 1.18545 1.19400 0.91648 0.86135 1.41630 0.92153 1.43705 1.28955 1.02663 1.57232 1.21006 0.97130 0.86001 0.94636 1.21752 0.95341 1.00204 0.97233 1.22859 0.97490 0.95827 0.94973 0.84887 1.23955 1.03345 0.78345 0.96500 1.49936 1.50829 1.07950 1.28559 1.17231 0.79873 0.83806 0.80814 1.90873 1.60514 1.22712 1.72230 1.20196 1.09674 0.87305 1.01195 1.21471 1.00489 0.98492 0.96460 1.21169 1.06843 0.93532 1.03328 1.22816 0.97386 0.99316 0.89615 1.42281 1.38925 1.07409 1.23841 0.73064 1.22696 0.95351 0.96832 0.84532 0.89087 1.19733 0.87572 0.96683 0.90988 0.94671 0.95116 0.92997 0.87729 0.94290 0.88654 0.85807 0.86232 0.81785 0.75965 0.92926 0.98488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.24 10.91 21.65 0.24 -61.01 16 2 C -0.05 -2.93 4.96 84.86 0.42 -2.51 16 3 Si 0.95 51.25 29.58 68.60 2.03 53.28 16 4 H -0.30 -16.98 7.11 99.48 0.71 -16.28 16 5 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.26 -15.59 9.55 84.03 0.80 -14.79 16 8 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 9 N -0.60 -32.01 3.02 -707.79 -2.14 -34.15 16 10 C 0.14 5.51 6.47 86.39 0.56 6.07 16 11 C -0.11 -3.08 5.66 30.63 0.17 -2.91 16 12 C -0.09 -2.34 4.39 -10.32 -0.05 -2.39 16 13 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 14 C 0.10 2.00 6.80 86.34 0.59 2.59 16 15 N -0.64 -22.79 3.34 -827.57 -2.77 -25.56 16 16 C 0.59 25.89 7.95 86.45 0.69 26.58 16 17 O -0.58 -33.40 16.00 -4.34 -0.07 -33.47 16 18 C -0.07 -2.42 7.01 40.35 0.28 -2.14 16 19 C -0.14 -4.80 10.65 22.57 0.24 -4.56 16 20 C -0.23 -5.21 10.81 22.01 0.24 -4.97 16 21 C 0.05 0.76 11.89 83.48 0.99 1.75 16 22 N -0.53 -11.28 5.90 -183.61 -1.08 -12.36 16 23 H 0.43 6.29 5.78 -92.71 -0.54 5.76 16 24 C 0.11 4.15 4.23 43.74 0.18 4.33 16 25 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 26 C 0.18 9.34 4.61 85.81 0.40 9.73 16 27 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 2.09 7.89 -2.38 -0.02 2.07 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.31 7.69 -2.39 -0.02 1.29 16 32 H 0.10 1.43 6.26 -2.39 -0.01 1.41 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.05 3.38 4.83 -2.39 -0.01 3.36 16 38 H 0.00 -0.15 7.97 -2.39 -0.02 -0.17 16 Total: -1.00 -90.69 306.51 2.27 -88.42 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.54 Total: 8.05 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.52 Total: 16.80 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -5.75 Total: -133.08 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.07 Total: -33.47 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.03 Total: 53.28 kcal Total: -90.69 2.27 -88.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084183801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.603 kcal (2) G-P(sol) polarization free energy of solvation -90.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds