Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47312 * 239.99799 * 3 2 1 5 5 H 1.48501 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47225 * 119.99879 * 3 2 1 7 7 C 1.38809 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99977 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85133 * 336.19440 * 10 9 7 12 12 C 1.53959 * 113.74302 * 107.40183 * 10 9 7 13 13 C 1.53778 * 87.02046 * 139.94208 * 12 10 9 14 14 H 1.08998 * 113.61505 * 89.22986 * 13 12 10 15 15 C 1.52996 * 113.61600 * 220.05231 * 13 12 10 16 16 N 1.46508 * 109.46732 * 274.13717 * 15 13 12 17 17 C 1.34776 * 119.99656 * 180.02562 * 16 15 13 18 18 O 1.21519 * 120.00171 * 359.97438 * 17 16 15 19 19 C 1.48169 * 120.00046 * 179.97438 * 17 16 15 20 20 C 1.39304 * 119.72744 * 179.97438 * 19 17 16 21 21 C 1.38589 * 119.05880 * 179.76686 * 20 19 17 22 22 C 1.38621 * 118.49148 * 0.49798 * 21 20 19 23 23 C 1.38563 * 119.34901 * 359.49980 * 22 21 20 24 24 N 1.31522 * 120.90538 * 0.25414 * 23 22 21 25 25 C 1.53786 * 113.61247 * 204.99817 * 10 9 7 26 26 H 0.97005 * 120.00318 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99830 * 359.97438 * 9 7 2 28 28 H 1.09006 * 113.60869 * 25.41929 * 12 10 9 29 29 H 1.09002 * 113.66702 * 254.47380 * 12 10 9 30 30 H 1.08998 * 109.47487 * 154.13774 * 15 13 12 31 31 H 1.09002 * 109.47053 * 34.13187 * 15 13 12 32 32 H 0.96991 * 119.99882 * 359.97438 * 16 15 13 33 33 H 1.07997 * 120.46830 * 359.97438 * 20 19 17 34 34 H 1.08007 * 120.75443 * 180.26738 * 21 20 19 35 35 H 1.08002 * 120.32910 * 179.78334 * 22 21 20 36 36 H 1.07997 * 119.54794 * 180.27721 * 23 22 21 37 37 H 1.08999 * 113.61350 * 105.39136 * 25 10 9 38 38 H 1.08994 * 113.68850 * 334.49671 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0655 -3.5638 -0.4049 12 6 2.0030 -4.4043 1.3453 13 6 1.8497 -5.6981 0.5283 14 1 2.7995 -6.1644 0.2666 15 6 0.8478 -6.6867 1.1281 16 7 1.5225 -7.5207 2.1259 17 6 0.8323 -8.4697 2.7888 18 8 -0.3498 -8.6332 2.5592 19 6 1.5146 -9.3136 3.7975 20 6 0.7956 -10.2924 4.4797 21 6 1.4488 -11.0772 5.4168 22 6 2.7965 -10.8486 5.6467 23 6 3.4490 -9.8573 4.9314 24 7 2.8059 -9.1303 4.0438 25 6 1.2601 -4.8288 -0.5949 26 1 -0.4851 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 1.1261 -4.1601 1.9450 29 1 2.9324 -4.3536 1.9125 30 1 0.4447 -7.3200 0.3379 31 1 0.0353 -6.1371 1.6034 32 1 2.4661 -7.3904 2.3089 33 1 -0.2552 -10.4399 4.2787 34 1 0.9189 -11.8469 5.9585 35 1 3.3340 -11.4403 6.3730 36 1 4.5000 -9.6795 5.1047 37 1 1.5907 -5.1203 -1.5918 38 1 0.1796 -4.7020 -0.5275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086012223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = 5.085250 kcal Electronic energy + Delta-G solvation = -19844.996585 eV Core-core repulsion = 16687.202986 eV Total energy + Delta-G solvation = -3157.793599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61468 -40.35974 -39.54783 -36.12615 -35.08467 -33.53781 -32.52862 -32.06134 -28.85623 -26.46725 -26.09547 -25.13720 -24.37175 -22.48652 -21.86244 -20.56782 -19.26927 -18.90003 -17.79976 -17.16325 -16.69863 -16.62643 -16.46925 -16.07148 -15.90214 -15.36786 -15.13911 -14.86400 -14.64436 -14.19543 -14.04369 -13.42770 -13.24388 -13.02933 -12.92873 -12.90002 -12.62970 -12.24897 -12.09583 -11.69708 -11.57114 -11.33067 -11.06947 -10.95014 -10.81141 -10.53602 -10.32912 -10.02717 -8.97808 -7.94077 -5.22650 -0.36301 0.26612 1.47223 1.50552 1.56591 1.68293 2.04253 2.57191 2.87869 3.12862 3.37548 3.69217 3.73251 3.81841 3.93925 3.98974 4.06197 4.11083 4.24788 4.34058 4.41130 4.50653 4.54095 4.72280 4.78073 4.96612 4.97843 5.02786 5.08187 5.16899 5.20894 5.31758 5.40534 5.52252 5.64929 5.71697 6.28085 6.36930 6.79830 7.09267 7.33471 8.11686 8.33813 9.29362 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.002809 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.377630 B = 9964.119021 C =10284.156525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.145 3.855 11 H 0.082 0.918 12 C -0.155 4.155 13 C -0.097 4.097 14 H 0.119 0.881 15 C 0.135 3.865 16 N -0.696 5.696 17 C 0.560 3.440 18 O -0.576 6.576 19 C 0.050 3.950 20 C -0.125 4.125 21 C -0.080 4.080 22 C -0.135 4.135 23 C 0.088 3.912 24 N -0.479 5.479 25 C -0.134 4.134 26 H 0.250 0.750 27 H 0.372 0.628 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.419 0.581 33 H 0.141 0.859 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.192 0.808 37 H 0.081 0.919 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 -25.945 10.928 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.367 5.367 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.196 4.196 13 C -0.116 4.116 14 H 0.137 0.863 15 C 0.012 3.988 16 N -0.346 5.346 17 C 0.346 3.654 18 O -0.456 6.456 19 C -0.087 4.087 20 C -0.146 4.146 21 C -0.105 4.105 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.191 5.191 25 C -0.173 4.173 26 H 0.059 0.941 27 H 0.204 0.796 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.256 0.744 33 H 0.159 0.841 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.209 0.791 37 H 0.099 0.901 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.442 -25.207 10.228 28.483 hybrid contribution -0.500 0.733 0.449 0.994 sum 7.942 -24.475 10.676 27.858 Atomic orbital electron populations 1.69819 1.06741 1.26115 1.59678 1.25612 0.96384 1.01298 1.03896 0.85196 0.77158 0.79072 0.78253 1.20175 1.22377 1.20386 1.19708 0.91610 0.85387 1.40865 0.90311 1.42624 1.05360 1.01217 1.87503 1.21968 0.95676 0.83872 0.94950 0.90044 1.23768 1.00963 0.96173 0.98674 1.22469 0.99371 0.92967 0.96777 0.86280 1.21353 0.95029 0.92002 0.90436 1.45818 1.14779 1.34356 1.39677 1.18382 0.85774 0.80325 0.80893 1.90755 1.16562 1.70923 1.67359 1.20946 0.91460 0.97698 0.98563 1.22274 1.02060 0.94516 0.95757 1.22061 0.95231 0.98085 0.95134 1.22869 0.95137 0.97812 0.99633 1.23469 1.01711 0.91339 0.90647 1.67502 1.07864 1.26573 1.17184 1.23314 1.00015 0.95634 0.98380 0.94080 0.79633 0.92649 0.91595 0.91031 0.93082 0.74396 0.84126 0.80826 0.80189 0.79073 0.90057 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.24 -13.70 9.97 84.03 0.84 -12.86 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -37.49 5.41 -320.15 -1.73 -39.23 16 10 C 0.14 5.63 4.48 45.58 0.20 5.83 16 11 H 0.08 3.05 8.10 -2.39 -0.02 3.04 16 12 C -0.16 -5.22 7.45 31.18 0.23 -4.99 16 13 C -0.10 -2.56 3.75 -10.27 -0.04 -2.60 16 14 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 15 C 0.14 3.73 5.50 86.38 0.47 4.20 16 16 N -0.70 -18.01 5.55 -465.64 -2.58 -20.60 16 17 C 0.56 16.19 7.81 86.88 0.68 16.87 16 18 O -0.58 -20.33 16.32 -3.78 -0.06 -20.39 16 19 C 0.05 1.17 6.75 41.91 0.28 1.45 16 20 C -0.12 -2.32 9.63 22.61 0.22 -2.10 16 21 C -0.08 -0.83 10.17 22.45 0.23 -0.60 16 22 C -0.14 -1.05 10.11 22.44 0.23 -0.83 16 23 C 0.09 1.06 11.18 84.82 0.95 2.01 16 24 N -0.48 -9.51 9.54 -184.91 -1.76 -11.28 16 25 C -0.13 -4.23 7.40 31.12 0.23 -4.00 16 26 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 27 H 0.37 20.72 7.93 -92.71 -0.73 19.99 16 28 H 0.05 2.13 7.92 -2.38 -0.02 2.11 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.64 7.87 -2.39 -0.02 1.62 16 32 H 0.42 9.41 7.80 -92.71 -0.72 8.68 16 33 H 0.14 2.70 7.64 -2.91 -0.02 2.68 16 34 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 Total: -1.00 -74.32 328.66 0.78 -73.53 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.38 Total: 31.72 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.99 Total: -1.82 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.80 Total: -131.72 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.39 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.32 0.78 -73.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086012223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.619 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds