Wall clock time and date at job start Mon Mar 30 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00440 * 2 1 4 4 H 1.48493 * 109.47724 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47261 * 300.00142 * 3 2 1 6 6 H 1.48505 * 109.47086 * 60.00027 * 3 2 1 7 7 C 1.38821 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99712 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.90799 * 336.24840 * 10 9 7 12 12 C 1.53782 * 113.61461 * 107.50496 * 10 9 7 13 13 C 1.53789 * 87.08115 * 139.97981 * 12 10 9 14 14 H 1.09004 * 113.68696 * 89.12359 * 13 12 10 15 15 C 1.52996 * 113.61211 * 220.01718 * 13 12 10 16 16 N 1.46498 * 109.47059 * 272.49489 * 15 13 12 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 13 18 18 O 1.21513 * 119.99898 * 0.28095 * 17 16 15 19 19 C 1.48151 * 120.00045 * 180.27636 * 17 16 15 20 20 C 1.39812 * 120.92093 * 359.72178 * 19 17 16 21 21 C 1.38153 * 119.00026 * 179.74981 * 20 19 17 22 22 N 1.31814 * 120.89404 * 0.54160 * 21 20 19 23 23 C 1.31813 * 122.05031 * 359.73061 * 22 21 20 24 24 C 1.38145 * 120.89588 * 359.97438 * 23 22 21 25 25 C 1.53782 * 87.08090 * 334.56654 * 13 12 10 26 26 H 0.97000 * 119.99677 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00013 * 0.02562 * 9 7 2 28 28 H 1.08995 * 113.61722 * 25.43098 * 12 10 9 29 29 H 1.09001 * 113.60922 * 254.52471 * 12 10 9 30 30 H 1.09004 * 109.47066 * 152.49757 * 15 13 12 31 31 H 1.08994 * 109.46974 * 32.49905 * 15 13 12 32 32 H 0.97001 * 120.00384 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.50328 * 359.97438 * 20 19 17 34 34 H 1.08005 * 119.55279 * 180.26749 * 21 20 19 35 35 H 1.07993 * 119.55136 * 180.02562 * 23 22 21 36 36 H 1.07998 * 120.50135 * 180.02562 * 24 23 22 37 37 H 1.09000 * 113.61210 * 139.97803 * 25 13 12 38 38 H 1.08999 * 113.61220 * 270.88761 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0660 -3.5648 -0.4049 12 6 1.9989 -4.4022 1.3433 13 6 1.8477 -5.6977 0.5284 14 1 2.7977 -6.1647 0.2681 15 6 0.8446 -6.6852 1.1279 16 7 1.5258 -7.5433 2.1005 17 6 0.8344 -8.4916 2.7630 18 8 -0.3529 -8.6383 2.5500 19 6 1.5219 -9.3553 3.7511 20 6 2.8884 -9.2071 4.0070 21 6 3.4882 -10.0305 4.9403 22 7 2.7925 -10.9516 5.5766 23 6 1.5041 -11.1282 5.3613 24 6 0.8234 -10.3450 4.4494 25 6 1.2599 -4.8288 -0.5961 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 1.1207 -4.1570 1.9404 29 1 2.9270 -4.3503 1.9124 30 1 0.4218 -7.3007 0.3338 31 1 0.0461 -6.1349 1.6253 32 1 2.4735 -7.4260 2.2708 33 1 3.4657 -8.4579 3.4856 34 1 4.5424 -9.9208 5.1481 35 1 0.9733 -11.8951 5.9058 36 1 -0.2324 -10.4949 4.2783 37 1 1.5915 -5.1212 -1.5924 38 1 0.1797 -4.7002 -0.5291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086012967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:43 Heat of formation + Delta-G solvation = 29.225837 kcal Electronic energy + Delta-G solvation = -19835.856859 eV Core-core repulsion = 16679.110075 eV Total energy + Delta-G solvation = -3156.746785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87584 -39.44408 -38.43147 -34.92385 -33.49262 -32.88107 -31.62840 -30.29370 -27.69610 -25.16298 -24.87617 -23.93718 -23.57191 -21.18150 -20.99728 -19.24248 -18.38156 -17.08940 -16.95449 -16.09376 -15.79251 -15.66706 -15.52951 -14.76696 -14.75115 -14.18892 -14.15829 -13.82412 -13.53600 -13.32965 -12.97042 -12.13666 -11.95815 -11.87697 -11.46893 -11.29188 -10.88816 -10.65410 -10.48438 -10.28036 -10.21458 -10.11956 -9.88489 -9.83641 -9.61410 -9.54660 -9.18213 -8.91056 -7.00142 -5.81734 -3.10787 0.35322 0.68378 2.63913 2.86286 3.40067 3.45621 3.48040 3.50385 4.01801 4.22503 4.38051 4.55071 4.55975 4.67180 4.88573 4.91014 5.09510 5.15948 5.34001 5.40856 5.42523 5.43553 5.64508 5.74012 5.78544 5.86992 6.04288 6.11913 6.18920 6.24509 6.29433 6.35395 6.53275 6.76245 7.05636 7.24372 7.49589 7.66236 7.92353 8.36779 9.47947 10.05886 10.39903 11.40689 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.002782 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.188751 B =10062.989144 C =10380.155003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.715 5.715 17 C 0.552 3.448 18 O -0.531 6.531 19 C -0.084 4.084 20 C -0.142 4.142 21 C 0.096 3.904 22 N -0.472 5.472 23 C 0.095 3.905 24 C -0.117 4.117 25 C -0.142 4.142 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.062 0.938 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -21.350 7.147 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.338 3.662 18 O -0.408 6.408 19 C -0.095 4.095 20 C -0.163 4.163 21 C -0.061 4.061 22 N -0.182 5.182 23 C -0.061 4.061 24 C -0.137 4.137 25 C -0.182 4.182 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.847 -21.757 7.542 23.758 hybrid contribution 0.167 1.550 -0.480 1.632 sum 6.014 -20.207 7.062 22.234 Atomic orbital electron populations 1.69672 1.05154 1.25683 1.57450 1.24783 0.95533 0.97837 1.02800 0.86117 0.78775 0.84062 0.77221 1.20527 1.21816 1.21836 1.19343 0.91088 0.84218 1.42910 0.91036 1.42422 1.05785 0.99897 1.86960 1.21511 0.95337 0.85059 0.92695 0.90626 1.23974 1.01414 0.94878 1.00046 1.22659 0.98356 0.94377 0.99373 0.89299 1.21533 0.95437 0.91523 0.90695 1.45971 1.13311 1.35017 1.42283 1.18195 0.86649 0.80483 0.80866 1.90794 1.14810 1.69797 1.65353 1.20467 0.94252 0.97192 0.97624 1.22397 0.94284 1.00526 0.99080 1.22792 1.00472 0.90757 0.92036 1.67573 1.08492 1.18284 1.23830 1.22836 0.90168 0.97914 0.95221 1.22358 1.02248 0.94041 0.95100 1.23455 1.01105 0.96951 0.96670 0.93461 0.78049 0.90295 0.92732 0.91382 0.90842 0.76425 0.84180 0.82001 0.81945 0.83371 0.91909 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.67 9.97 -15.05 -0.15 -6.82 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.47 5.40 -52.63 -0.28 -17.76 16 10 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.55 7.43 -25.91 -0.19 -2.74 16 13 C -0.13 -1.60 3.75 -89.80 -0.34 -1.94 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.62 5.51 -4.04 -0.02 1.60 16 16 N -0.71 -7.61 5.51 -61.16 -0.34 -7.94 16 17 C 0.55 6.80 7.80 -12.19 -0.10 6.71 16 18 O -0.53 -8.48 16.45 5.35 0.09 -8.39 16 19 C -0.08 -0.84 5.91 -104.65 -0.62 -1.45 16 20 C -0.14 -1.08 9.62 -39.02 -0.38 -1.45 16 21 C 0.10 0.73 11.17 -17.59 -0.20 0.53 16 22 N -0.47 -4.37 10.33 -13.30 -0.14 -4.51 16 23 C 0.10 0.78 11.17 -17.59 -0.20 0.58 16 24 C -0.12 -1.07 9.68 -39.02 -0.38 -1.45 16 25 C -0.14 -2.16 7.39 -25.91 -0.19 -2.35 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 28 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 32 H 0.40 3.17 6.62 -40.82 -0.27 2.90 16 33 H 0.14 0.70 6.54 -52.49 -0.34 0.35 16 34 H 0.16 0.77 8.06 -52.48 -0.42 0.34 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.30 7.74 -52.49 -0.41 0.89 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -33.16 326.58 -8.28 -41.44 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.08 Total: 8.85 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.15 Total: -6.47 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.03 Total: -57.44 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.16 -8.28 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086012967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.666 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds