Wall clock time and date at job start Mon Mar 30 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00440 * 2 1 4 4 H 1.48493 * 109.47724 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47261 * 300.00142 * 3 2 1 6 6 H 1.48505 * 109.47086 * 60.00027 * 3 2 1 7 7 C 1.38821 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99712 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.90799 * 336.24840 * 10 9 7 12 12 C 1.53782 * 113.61461 * 107.50496 * 10 9 7 13 13 C 1.53789 * 87.08115 * 139.97981 * 12 10 9 14 14 H 1.09004 * 113.68696 * 89.12359 * 13 12 10 15 15 C 1.52996 * 113.61211 * 220.01718 * 13 12 10 16 16 N 1.46498 * 109.47059 * 272.49489 * 15 13 12 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 13 18 18 O 1.21513 * 119.99898 * 0.28095 * 17 16 15 19 19 C 1.48151 * 120.00045 * 180.27636 * 17 16 15 20 20 C 1.39812 * 120.92093 * 359.72178 * 19 17 16 21 21 C 1.38153 * 119.00026 * 179.74981 * 20 19 17 22 22 N 1.31814 * 120.89404 * 0.54160 * 21 20 19 23 23 C 1.31813 * 122.05031 * 359.73061 * 22 21 20 24 24 C 1.38145 * 120.89588 * 359.97438 * 23 22 21 25 25 C 1.53782 * 87.08090 * 334.56654 * 13 12 10 26 26 H 0.97000 * 119.99677 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00013 * 0.02562 * 9 7 2 28 28 H 1.08995 * 113.61722 * 25.43098 * 12 10 9 29 29 H 1.09001 * 113.60922 * 254.52471 * 12 10 9 30 30 H 1.09004 * 109.47066 * 152.49757 * 15 13 12 31 31 H 1.08994 * 109.46974 * 32.49905 * 15 13 12 32 32 H 0.97001 * 120.00384 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.50328 * 359.97438 * 20 19 17 34 34 H 1.08005 * 119.55279 * 180.26749 * 21 20 19 35 35 H 1.07993 * 119.55136 * 180.02562 * 23 22 21 36 36 H 1.07998 * 120.50135 * 180.02562 * 24 23 22 37 37 H 1.09000 * 113.61210 * 139.97803 * 25 13 12 38 38 H 1.08999 * 113.61220 * 270.88761 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0660 -3.5648 -0.4049 12 6 1.9989 -4.4022 1.3433 13 6 1.8477 -5.6977 0.5284 14 1 2.7977 -6.1647 0.2681 15 6 0.8446 -6.6852 1.1279 16 7 1.5258 -7.5433 2.1005 17 6 0.8344 -8.4916 2.7630 18 8 -0.3529 -8.6383 2.5500 19 6 1.5219 -9.3553 3.7511 20 6 2.8884 -9.2071 4.0070 21 6 3.4882 -10.0305 4.9403 22 7 2.7925 -10.9516 5.5766 23 6 1.5041 -11.1282 5.3613 24 6 0.8234 -10.3450 4.4494 25 6 1.2599 -4.8288 -0.5961 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 1.1207 -4.1570 1.9404 29 1 2.9270 -4.3503 1.9124 30 1 0.4218 -7.3007 0.3338 31 1 0.0461 -6.1349 1.6253 32 1 2.4735 -7.4260 2.2708 33 1 3.4657 -8.4579 3.4856 34 1 4.5424 -9.9208 5.1481 35 1 0.9733 -11.8951 5.9058 36 1 -0.2324 -10.4949 4.2783 37 1 1.5915 -5.1212 -1.5924 38 1 0.1797 -4.7002 -0.5291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086012967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:43 Heat of formation + Delta-G solvation = 5.883433 kcal Electronic energy + Delta-G solvation = -19836.869062 eV Core-core repulsion = 16679.110075 eV Total energy + Delta-G solvation = -3157.758987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64258 -40.40894 -39.62500 -36.17099 -35.14533 -33.70609 -32.32100 -32.05051 -28.90927 -26.45462 -26.14179 -25.23576 -24.36040 -22.49539 -21.90446 -20.55842 -19.34535 -18.93392 -17.77643 -16.96202 -16.69255 -16.59868 -16.46949 -16.25490 -15.98258 -15.37836 -15.10750 -14.88020 -14.78107 -14.42772 -14.30763 -13.43994 -13.23424 -13.05663 -12.94622 -12.68889 -12.66583 -12.17686 -12.06062 -11.69967 -11.56512 -11.33495 -11.06235 -11.01064 -10.82255 -10.52646 -10.19937 -10.17378 -8.97507 -7.94735 -5.22899 -0.36042 0.09596 1.47714 1.48175 1.58225 1.77361 1.96761 2.56797 2.84523 3.37005 3.45443 3.51429 3.70591 3.72573 3.82773 3.91971 3.95352 4.07285 4.25712 4.34939 4.41155 4.52466 4.56193 4.71183 4.80747 4.82113 4.96947 4.99232 5.03892 5.05144 5.20541 5.29356 5.40676 5.52860 5.60868 5.73246 6.27984 6.39248 6.89861 7.03782 7.33343 8.12088 8.33153 9.29119 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.002782 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.188751 B =10062.989144 C =10380.155003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.083 0.917 12 C -0.155 4.155 13 C -0.095 4.095 14 H 0.126 0.874 15 C 0.136 3.864 16 N -0.701 5.701 17 C 0.551 3.449 18 O -0.576 6.576 19 C -0.103 4.103 20 C -0.133 4.133 21 C 0.094 3.906 22 N -0.492 5.492 23 C 0.094 3.906 24 C -0.128 4.128 25 C -0.137 4.137 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.417 0.583 33 H 0.169 0.831 34 H 0.193 0.807 35 H 0.186 0.814 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -22.645 7.488 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.101 0.899 12 C -0.195 4.195 13 C -0.114 4.114 14 H 0.144 0.856 15 C 0.013 3.987 16 N -0.353 5.353 17 C 0.338 3.662 18 O -0.457 6.457 19 C -0.114 4.114 20 C -0.153 4.153 21 C -0.062 4.062 22 N -0.201 5.201 23 C -0.062 4.062 24 C -0.149 4.149 25 C -0.177 4.177 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.255 0.745 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.203 0.797 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.758 -23.103 7.892 25.937 hybrid contribution -0.656 1.858 -0.571 2.052 sum 8.101 -21.245 7.321 23.887 Atomic orbital electron populations 1.69833 1.06749 1.25916 1.59917 1.25604 0.96362 1.01279 1.04074 0.85080 0.78413 0.79860 0.76472 1.18659 1.22251 1.22368 1.19775 0.91629 0.85331 1.40374 0.90171 1.42660 1.05375 1.01313 1.87483 1.21973 0.95692 0.83795 0.95233 0.89940 1.23746 1.01178 0.96040 0.98575 1.22488 0.99489 0.92867 0.96534 0.85621 1.21323 0.94986 0.91513 0.90903 1.45793 1.13989 1.34090 1.41445 1.18583 0.86189 0.80520 0.80860 1.90770 1.16851 1.71157 1.66884 1.20400 0.95468 0.97588 0.97925 1.22668 0.93180 1.00728 0.98714 1.23338 1.01747 0.89881 0.91282 1.67637 1.08903 1.19114 1.24490 1.23170 0.90082 0.98066 0.94884 1.22444 1.02296 0.94486 0.95684 1.23339 0.99941 0.95885 0.98531 0.94147 0.79696 0.92722 0.91081 0.91189 0.93234 0.74487 0.81311 0.79019 0.79687 0.83847 0.90175 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.94 13.06 21.65 0.28 -59.65 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.03 9.97 84.04 0.84 -12.19 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -36.13 5.40 -320.44 -1.73 -37.86 16 10 C 0.14 5.14 4.48 45.52 0.20 5.35 16 11 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 12 C -0.15 -4.61 7.43 31.12 0.23 -4.38 16 13 C -0.09 -2.10 3.75 -10.27 -0.04 -2.14 16 14 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 15 C 0.14 3.16 5.51 86.38 0.48 3.64 16 16 N -0.70 -13.40 5.51 -465.69 -2.57 -15.97 16 17 C 0.55 13.10 7.80 86.88 0.68 13.78 16 18 O -0.58 -18.69 16.45 -3.76 -0.06 -18.75 16 19 C -0.10 -1.90 5.91 -19.88 -0.12 -2.02 16 20 C -0.13 -1.62 9.62 22.63 0.22 -1.40 16 21 C 0.09 1.14 11.17 84.68 0.95 2.09 16 22 N -0.49 -8.04 10.33 -196.01 -2.03 -10.06 16 23 C 0.09 1.40 11.17 84.67 0.95 2.35 16 24 C -0.13 -2.28 9.68 22.63 0.22 -2.06 16 25 C -0.14 -3.97 7.39 31.12 0.23 -3.74 16 26 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.37 20.08 7.92 -92.71 -0.73 19.34 16 28 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.05 1.42 7.84 -2.39 -0.02 1.40 16 32 H 0.42 5.06 6.62 -92.71 -0.61 4.45 16 33 H 0.17 0.94 6.54 -2.91 -0.02 0.92 16 34 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.14 2.59 7.74 -2.91 -0.02 2.57 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -73.69 326.58 0.96 -72.73 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.26 Total: 26.68 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.30 Total: -4.91 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.04 Total: -123.54 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.06 Total: -18.75 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.69 0.96 -72.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086012967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.612 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds