Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48497 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47514 * 300.00526 * 3 2 1 6 6 H 1.48508 * 109.47001 * 60.00753 * 3 2 1 7 7 C 1.38809 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99394 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99875 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.85188 * 336.19528 * 10 9 7 12 12 C 1.53958 * 113.61740 * 107.46477 * 10 9 7 13 13 C 1.53786 * 87.01896 * 89.19847 * 12 10 9 14 14 H 1.08992 * 113.61337 * 270.77616 * 13 12 10 15 15 C 1.52998 * 113.61343 * 139.95434 * 13 12 10 16 16 N 1.46496 * 109.46851 * 85.86276 * 15 13 12 17 17 C 1.34777 * 119.99614 * 179.97438 * 16 15 13 18 18 O 1.21552 * 120.00264 * 0.02562 * 17 16 15 19 19 C 1.47846 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.40022 * 120.55855 * 179.72572 * 19 17 16 21 21 C 1.38363 * 118.28534 * 179.72817 * 20 19 17 22 22 C 1.38354 * 119.30096 * 0.54909 * 21 20 19 23 23 N 1.31930 * 121.08112 * 359.70804 * 22 21 20 24 24 C 1.31694 * 121.88052 * 0.02562 * 23 22 21 25 25 C 1.53780 * 87.17299 * 25.36403 * 13 12 10 26 26 H 0.97012 * 120.00307 * 359.97438 * 1 2 3 27 27 H 0.96991 * 119.99837 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.66117 * 334.67190 * 12 10 9 29 29 H 1.09000 * 113.61435 * 203.71615 * 12 10 9 30 30 H 1.09000 * 109.46986 * 325.86324 * 15 13 12 31 31 H 1.09002 * 109.46857 * 205.86190 * 15 13 12 32 32 H 0.96996 * 120.00499 * 0.02562 * 16 15 13 33 33 H 1.07992 * 120.86021 * 359.97438 * 20 19 17 34 34 H 1.07996 * 120.34827 * 180.25832 * 21 20 19 35 35 H 1.07996 * 119.45857 * 179.73866 * 22 21 20 36 36 H 1.07999 * 119.71958 * 180.02562 * 24 23 22 37 37 H 1.09001 * 113.61717 * 89.15195 * 25 13 12 38 38 H 1.08995 * 113.61700 * 219.98039 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6567 -0.0005 11 1 3.0655 -3.5638 -0.4060 12 6 1.9997 -4.4026 1.3451 13 6 0.7220 -5.0805 0.8225 14 1 -0.1894 -4.5272 1.0483 15 6 0.6225 -6.5633 1.1860 16 7 0.0256 -6.7008 2.5168 17 6 -0.1619 -7.9251 3.0480 18 8 0.1647 -8.9153 2.4232 19 6 -0.7648 -8.0640 4.3908 20 6 -0.9701 -9.3305 4.9515 21 6 -1.5325 -9.4055 6.2135 22 6 -1.8812 -8.2386 6.8698 23 7 -1.6809 -7.0588 6.3144 24 6 -1.1442 -6.9354 5.1181 25 6 1.2599 -4.8288 -0.5960 26 1 -0.4851 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 1.8286 -3.7490 2.2004 29 1 2.8291 -5.0931 1.4978 30 1 1.6191 -7.0048 1.1875 31 1 -0.0010 -7.0759 0.4535 32 1 -0.2354 -5.9107 3.0153 33 1 -0.6930 -10.2256 4.4146 34 1 -1.7018 -10.3651 6.6792 35 1 -2.3243 -8.2944 7.8531 36 1 -0.9956 -5.9521 4.6968 37 1 1.8869 -5.6360 -0.9749 38 1 0.4924 -4.5202 -1.3057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086289141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = 29.393769 kcal Electronic energy + Delta-G solvation = -20009.598889 eV Core-core repulsion = 16852.859387 eV Total energy + Delta-G solvation = -3156.739503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82437 -39.35667 -38.40370 -34.83972 -33.30342 -32.83258 -31.85226 -30.13374 -27.54052 -25.10607 -24.68695 -23.88760 -23.50959 -21.74783 -20.86739 -18.70554 -18.09933 -17.30752 -17.07113 -16.67921 -15.61528 -15.47314 -15.16672 -14.88981 -14.33159 -14.12232 -13.96443 -13.59510 -13.38970 -13.22247 -12.92811 -12.53723 -12.30198 -11.95652 -11.44963 -11.07036 -10.88149 -10.57543 -10.45379 -10.27363 -10.15252 -9.97408 -9.72808 -9.71505 -9.59882 -9.50370 -9.07844 -8.91414 -7.02817 -5.83266 -3.12439 0.32703 0.85923 2.66915 3.00333 3.40158 3.46246 3.48283 3.56216 3.96399 4.41198 4.48371 4.53702 4.56569 4.67053 4.99814 5.01004 5.05078 5.19011 5.24673 5.42758 5.57354 5.64850 5.66575 5.72449 5.83483 5.91180 6.06351 6.17812 6.18146 6.31163 6.34151 6.55013 6.70975 6.85665 7.00689 7.35400 7.50874 7.67329 8.02642 8.35860 9.46732 10.03914 10.38038 11.39166 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003209 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.643288 B = 8723.226279 C = 9584.058980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.170 4.170 13 C -0.121 4.121 14 H 0.094 0.906 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.560 3.440 18 O -0.540 6.540 19 C -0.185 4.185 20 C -0.019 4.019 21 C -0.181 4.181 22 C 0.119 3.881 23 N -0.486 5.486 24 C 0.136 3.864 25 C -0.147 4.147 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.077 0.923 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -18.306 10.478 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.211 4.211 13 C -0.140 4.140 14 H 0.112 0.888 15 C 0.008 3.992 16 N -0.367 5.367 17 C 0.346 3.654 18 O -0.419 6.419 19 C -0.191 4.191 20 C -0.045 4.045 21 C -0.201 4.201 22 C -0.038 4.038 23 N -0.194 5.194 24 C -0.022 4.022 25 C -0.187 4.187 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.096 0.904 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.587 -18.061 10.439 21.021 hybrid contribution 0.141 0.511 -0.107 0.541 sum -2.446 -17.550 10.332 20.512 Atomic orbital electron populations 1.69669 1.05139 1.25706 1.57493 1.24766 0.95547 0.97811 1.02751 0.86102 0.78824 0.83960 0.77211 1.20486 1.21822 1.21811 1.19333 0.91152 0.83944 1.42905 0.90934 1.42178 1.05696 0.99457 1.87111 1.21085 0.95123 0.85577 0.92684 0.91928 1.23931 0.95629 0.99660 1.01847 1.22731 0.99700 0.92764 0.98788 0.88799 1.21545 0.98162 0.97290 0.82211 1.45998 1.62994 1.07718 1.19976 1.18041 0.78590 0.83679 0.85131 1.90771 1.51430 1.37480 1.62191 1.21083 1.05385 0.95678 0.96917 1.21757 0.91412 0.97430 0.93908 1.22186 1.01419 1.00663 0.95836 1.23048 0.93726 0.87522 0.99479 1.67740 1.12934 1.27627 1.11125 1.23084 0.91200 0.98207 0.89742 1.23440 1.00515 0.99726 0.95013 0.93466 0.78108 0.91430 0.91361 0.91283 0.91535 0.76225 0.83513 0.83980 0.82174 0.82174 0.90424 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.08 5.31 -52.54 -0.28 -17.36 16 10 C 0.17 3.19 4.56 -67.03 -0.31 2.88 16 11 H 0.06 1.20 8.10 -51.92 -0.42 0.78 16 12 C -0.17 -2.72 7.44 -25.82 -0.19 -2.92 16 13 C -0.12 -1.73 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 16 N -0.72 -8.50 5.51 -61.25 -0.34 -8.84 16 17 C 0.56 7.26 7.78 -12.33 -0.10 7.17 16 18 O -0.54 -8.68 16.42 5.32 0.09 -8.59 16 19 C -0.19 -2.02 5.89 -104.82 -0.62 -2.64 16 20 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 21 C -0.18 -1.31 10.10 -39.49 -0.40 -1.70 16 22 C 0.12 0.95 11.17 -17.47 -0.20 0.76 16 23 N -0.49 -5.16 10.35 -12.91 -0.13 -5.29 16 24 C 0.14 1.40 10.71 -17.13 -0.18 1.21 16 25 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 26 H 0.26 7.31 8.31 -40.81 -0.34 6.97 16 27 H 0.38 9.84 7.90 -40.82 -0.32 9.51 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.99 7.92 -51.93 -0.41 0.57 16 30 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 4.09 6.54 -40.82 -0.27 3.82 16 33 H 0.15 1.29 7.74 -52.49 -0.41 0.89 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.16 1.37 6.42 -52.49 -0.34 1.04 16 37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -32.42 326.30 -8.27 -40.69 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.08 Total: 10.14 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.15 Total: -5.84 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.03 Total: -58.30 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.42 -8.27 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086289141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.084 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds