Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48497 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47514 * 300.00526 * 3 2 1 6 6 H 1.48508 * 109.47001 * 60.00753 * 3 2 1 7 7 C 1.38809 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99394 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99875 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.85188 * 336.19528 * 10 9 7 12 12 C 1.53958 * 113.61740 * 107.46477 * 10 9 7 13 13 C 1.53786 * 87.01896 * 89.19847 * 12 10 9 14 14 H 1.08992 * 113.61337 * 270.77616 * 13 12 10 15 15 C 1.52998 * 113.61343 * 139.95434 * 13 12 10 16 16 N 1.46496 * 109.46851 * 85.86276 * 15 13 12 17 17 C 1.34777 * 119.99614 * 179.97438 * 16 15 13 18 18 O 1.21552 * 120.00264 * 0.02562 * 17 16 15 19 19 C 1.47846 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.40022 * 120.55855 * 179.72572 * 19 17 16 21 21 C 1.38363 * 118.28534 * 179.72817 * 20 19 17 22 22 C 1.38354 * 119.30096 * 0.54909 * 21 20 19 23 23 N 1.31930 * 121.08112 * 359.70804 * 22 21 20 24 24 C 1.31694 * 121.88052 * 0.02562 * 23 22 21 25 25 C 1.53780 * 87.17299 * 25.36403 * 13 12 10 26 26 H 0.97012 * 120.00307 * 359.97438 * 1 2 3 27 27 H 0.96991 * 119.99837 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.66117 * 334.67190 * 12 10 9 29 29 H 1.09000 * 113.61435 * 203.71615 * 12 10 9 30 30 H 1.09000 * 109.46986 * 325.86324 * 15 13 12 31 31 H 1.09002 * 109.46857 * 205.86190 * 15 13 12 32 32 H 0.96996 * 120.00499 * 0.02562 * 16 15 13 33 33 H 1.07992 * 120.86021 * 359.97438 * 20 19 17 34 34 H 1.07996 * 120.34827 * 180.25832 * 21 20 19 35 35 H 1.07996 * 119.45857 * 179.73866 * 22 21 20 36 36 H 1.07999 * 119.71958 * 180.02562 * 24 23 22 37 37 H 1.09001 * 113.61717 * 89.15195 * 25 13 12 38 38 H 1.08995 * 113.61700 * 219.98039 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6567 -0.0005 11 1 3.0655 -3.5638 -0.4060 12 6 1.9997 -4.4026 1.3451 13 6 0.7220 -5.0805 0.8225 14 1 -0.1894 -4.5272 1.0483 15 6 0.6225 -6.5633 1.1860 16 7 0.0256 -6.7008 2.5168 17 6 -0.1619 -7.9251 3.0480 18 8 0.1647 -8.9153 2.4232 19 6 -0.7648 -8.0640 4.3908 20 6 -0.9701 -9.3305 4.9515 21 6 -1.5325 -9.4055 6.2135 22 6 -1.8812 -8.2386 6.8698 23 7 -1.6809 -7.0588 6.3144 24 6 -1.1442 -6.9354 5.1181 25 6 1.2599 -4.8288 -0.5960 26 1 -0.4851 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 1.8286 -3.7490 2.2004 29 1 2.8291 -5.0931 1.4978 30 1 1.6191 -7.0048 1.1875 31 1 -0.0010 -7.0759 0.4535 32 1 -0.2354 -5.9107 3.0153 33 1 -0.6930 -10.2256 4.4146 34 1 -1.7018 -10.3651 6.6792 35 1 -2.3243 -8.2944 7.8531 36 1 -0.9956 -5.9521 4.6968 37 1 1.8869 -5.6360 -0.9749 38 1 0.4924 -4.5202 -1.3057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086289141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = 7.117894 kcal Electronic energy + Delta-G solvation = -20010.564844 eV Core-core repulsion = 16852.859387 eV Total energy + Delta-G solvation = -3157.705457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64538 -40.41942 -39.62537 -36.10812 -35.04208 -33.56511 -32.71616 -31.88537 -28.78800 -26.43515 -25.94972 -25.16392 -24.48789 -23.04111 -21.81567 -19.97122 -19.39559 -18.96010 -17.86327 -17.51723 -16.75729 -16.54181 -16.43042 -16.03819 -15.79498 -15.43828 -15.01365 -14.66349 -14.62083 -14.40841 -14.13306 -13.72009 -13.28756 -13.19157 -12.95315 -12.91431 -12.66125 -12.12842 -12.05067 -11.66339 -11.48379 -11.28286 -11.00026 -10.93638 -10.80993 -10.48678 -10.34882 -10.05469 -8.99514 -7.95331 -5.23434 -0.40684 0.18481 1.48430 1.48701 1.58717 1.76687 2.05292 2.55946 2.82452 3.28615 3.37621 3.66463 3.72151 3.78209 3.80171 3.84392 3.94599 4.03386 4.15027 4.32895 4.40353 4.43258 4.64277 4.72574 4.75394 4.93766 4.99112 4.99665 5.09061 5.12053 5.23900 5.35178 5.46061 5.54081 5.56921 5.66604 6.28655 6.39714 6.82754 7.05250 7.33742 8.11008 8.33043 9.28090 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003209 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.643288 B = 8723.226279 C = 9584.058980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.060 0.940 12 C -0.155 4.155 13 C -0.104 4.104 14 H 0.082 0.918 15 C 0.140 3.860 16 N -0.711 5.711 17 C 0.561 3.439 18 O -0.576 6.576 19 C -0.202 4.202 20 C -0.029 4.029 21 C -0.168 4.168 22 C 0.118 3.882 23 N -0.512 5.512 24 C 0.130 3.870 25 C -0.134 4.134 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.106 0.894 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 -19.766 11.698 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.078 0.922 12 C -0.195 4.195 13 C -0.123 4.123 14 H 0.101 0.899 15 C 0.016 3.984 16 N -0.362 5.362 17 C 0.348 3.652 18 O -0.457 6.457 19 C -0.207 4.207 20 C -0.055 4.055 21 C -0.187 4.187 22 C -0.038 4.038 23 N -0.221 5.221 24 C -0.028 4.028 25 C -0.173 4.173 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.210 0.790 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.101 -19.547 11.670 22.862 hybrid contribution 0.017 0.857 -0.433 0.960 sum -2.084 -18.690 11.237 21.907 Atomic orbital electron populations 1.69813 1.06539 1.25979 1.59596 1.25536 0.96378 1.01010 1.03820 0.85103 0.78290 0.79968 0.76584 1.19057 1.22180 1.22114 1.19699 0.91513 0.85178 1.40850 0.90574 1.42314 1.05357 1.00585 1.87586 1.21422 0.95078 0.84901 0.95255 0.92206 1.23756 0.97317 0.99256 0.99193 1.22510 0.98433 0.93578 0.97735 0.89949 1.21377 0.98479 0.95740 0.82756 1.45942 1.62582 1.08009 1.19677 1.18336 0.77937 0.83212 0.85670 1.90744 1.53181 1.38490 1.63295 1.20974 1.06858 0.96752 0.96160 1.21971 0.91686 0.96912 0.94948 1.22539 0.99475 1.02062 0.94615 1.23667 0.92653 0.86974 1.00530 1.67779 1.13793 1.29225 1.11310 1.23184 0.91297 0.98412 0.89915 1.23341 0.99978 0.98658 0.95306 0.94035 0.79330 0.93249 0.88979 0.90960 0.91447 0.75285 0.83338 0.80400 0.79012 0.81511 0.87520 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.21 5.31 -320.15 -1.70 -36.91 16 10 C 0.14 5.36 4.56 45.58 0.21 5.57 16 11 H 0.06 2.25 8.10 -2.38 -0.02 2.23 16 12 C -0.15 -4.78 7.44 31.18 0.23 -4.55 16 13 C -0.10 -2.86 3.63 -10.27 -0.04 -2.90 16 14 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.14 3.39 5.50 86.38 0.47 3.86 16 16 N -0.71 -16.32 5.51 -465.98 -2.57 -18.88 16 17 C 0.56 14.27 7.78 86.79 0.68 14.94 16 18 O -0.58 -18.28 16.42 -3.88 -0.06 -18.35 16 19 C -0.20 -4.26 5.89 -19.99 -0.12 -4.38 16 20 C -0.03 -0.50 9.72 22.73 0.22 -0.28 16 21 C -0.17 -1.94 10.10 22.33 0.23 -1.72 16 22 C 0.12 1.58 11.17 84.71 0.95 2.53 16 23 N -0.51 -10.13 10.35 -194.75 -2.01 -12.15 16 24 C 0.13 2.58 10.71 85.02 0.91 3.49 16 25 C -0.13 -3.96 7.39 31.12 0.23 -3.73 16 26 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 27 H 0.37 19.59 7.90 -92.72 -0.73 18.86 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 30 H 0.07 1.76 7.87 -2.39 -0.02 1.74 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.41 8.11 6.54 -92.71 -0.61 7.50 16 33 H 0.15 2.46 7.74 -2.91 -0.02 2.44 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.17 2.82 6.42 -2.91 -0.02 2.80 16 37 H 0.11 2.57 8.10 -2.39 -0.02 2.55 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.29 326.30 0.98 -69.30 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.25 Total: 30.68 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.27 Total: -3.23 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -6.00 Total: -126.07 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -70.29 0.98 -69.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086289141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.423 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds