Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99591 * 2 1 4 4 H 1.48493 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47106 * 300.00143 * 3 2 1 6 6 H 1.48500 * 109.47127 * 60.00160 * 3 2 1 7 7 C 1.38809 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99548 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85074 * 336.19921 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50245 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.46494 * 109.47391 * 87.55384 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21517 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.48146 * 120.00317 * 179.97438 * 17 16 15 20 20 C 1.39817 * 120.92076 * 359.71382 * 19 17 16 21 21 C 1.38151 * 119.00043 * 179.75103 * 20 19 17 22 22 N 1.31813 * 120.89761 * 0.53859 * 21 20 19 23 23 C 1.31818 * 122.04812 * 359.73850 * 22 21 20 24 24 C 1.38148 * 120.89290 * 359.97330 * 23 22 21 25 25 C 1.53781 * 113.61619 * 205.00090 * 10 9 7 26 26 H 0.96993 * 120.00590 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 29 29 H 1.08994 * 113.61387 * 334.57115 * 12 10 9 30 30 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 31 31 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 32 32 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 33 33 H 1.08000 * 120.50212 * 0.02562 * 20 19 17 34 34 H 1.08004 * 119.55468 * 180.27625 * 21 20 19 35 35 H 1.07996 * 119.54961 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.49687 * 180.02562 * 24 23 22 37 37 H 1.09002 * 113.61445 * 25.43587 * 25 10 9 38 38 H 1.09002 * 113.61408 * 156.25317 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0658 -3.5637 -0.4048 12 6 1.9993 -4.4020 1.3444 13 6 0.7201 -5.0817 0.8225 14 1 -0.1914 -4.5281 1.0475 15 6 0.6210 -6.5648 1.1850 16 7 -0.0114 -6.7051 2.4989 17 6 -0.2039 -7.9301 3.0268 18 8 0.1467 -8.9183 2.4127 19 6 -0.8430 -8.0720 4.3558 20 6 -1.2485 -6.9480 5.0817 21 6 -1.8452 -7.1265 6.3149 22 7 -2.0237 -8.3342 6.8119 23 6 -1.6512 -9.4196 6.1634 24 6 -1.0521 -9.3334 4.9215 25 6 1.2604 -4.8288 -0.5950 26 1 -0.4850 0.8399 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 2.8281 -5.0932 1.4971 29 1 1.8293 -3.7478 2.1994 30 1 0.0218 -7.0826 0.4361 31 1 1.6204 -6.9992 1.2146 32 1 -0.2910 -5.9163 2.9893 33 1 -1.1016 -5.9553 4.6824 34 1 -2.1659 -6.2646 6.8812 35 1 -1.8167 -10.3894 6.6089 36 1 -0.7499 -10.2270 4.3956 37 1 0.4941 -4.5190 -1.3055 38 1 1.8874 -5.6360 -0.9738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086292818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = 29.845864 kcal Electronic energy + Delta-G solvation = -19994.327329 eV Core-core repulsion = 16837.607430 eV Total energy + Delta-G solvation = -3156.719898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82399 -39.41426 -38.45724 -34.89070 -33.42009 -32.82711 -31.56961 -30.20629 -27.68338 -25.13970 -24.82421 -23.84243 -23.51437 -21.80289 -20.91651 -18.83622 -18.13777 -17.31226 -16.88745 -16.02937 -15.67981 -15.62117 -15.46377 -14.93315 -14.33605 -14.16391 -14.04385 -14.00170 -13.54511 -13.28640 -12.95137 -12.36029 -12.03821 -11.98626 -11.48223 -11.10028 -10.90479 -10.59334 -10.51241 -10.22791 -10.17831 -10.01740 -9.79282 -9.74989 -9.55474 -9.54302 -9.14607 -8.94438 -7.05727 -5.85969 -3.15234 0.40549 0.74279 2.67868 2.91737 3.37989 3.44259 3.46197 3.55659 4.07922 4.28557 4.44695 4.51256 4.62295 4.73076 4.95558 4.97322 5.14862 5.17078 5.39809 5.40290 5.47700 5.53113 5.62014 5.70867 5.79515 5.87637 6.02069 6.14578 6.21706 6.27923 6.30898 6.51531 6.67339 6.82073 6.97296 7.29619 7.55388 7.64801 7.95740 8.33154 9.44048 10.00977 10.35146 11.36477 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.003187 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.463499 B = 8784.296352 C = 9645.318650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.121 4.121 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.714 5.714 17 C 0.553 3.447 18 O -0.535 6.535 19 C -0.085 4.085 20 C -0.141 4.141 21 C 0.097 3.903 22 N -0.472 5.472 23 C 0.094 3.906 24 C -0.118 4.118 25 C -0.147 4.147 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -16.375 9.423 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.140 4.140 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.365 5.365 17 C 0.339 3.661 18 O -0.412 6.412 19 C -0.096 4.096 20 C -0.162 4.162 21 C -0.060 4.060 22 N -0.181 5.181 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.187 4.187 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.531 -16.969 9.735 19.727 hybrid contribution 0.309 1.427 -0.534 1.555 sum -2.222 -15.542 9.201 18.198 Atomic orbital electron populations 1.69666 1.05140 1.25729 1.57506 1.24768 0.95550 0.97820 1.02734 0.86100 0.78831 0.83931 0.77224 1.20477 1.21796 1.21816 1.19333 0.91162 0.83937 1.42911 0.90924 1.42181 1.05685 0.99456 1.87131 1.21049 0.95157 0.85581 0.92695 0.91892 1.23938 0.95587 0.99628 1.01850 1.22761 0.99685 0.92691 0.98861 0.88814 1.21566 0.97729 0.97331 0.82638 1.45995 1.61388 1.07780 1.21296 1.18195 0.79082 0.83737 0.85071 1.90774 1.50972 1.37629 1.61859 1.20457 0.99456 0.94601 0.95129 1.22443 0.98259 0.99266 0.96182 1.22812 0.94971 0.95220 0.92960 1.67578 1.16011 0.99084 1.35474 1.22828 0.94356 0.97633 0.91456 1.22334 0.97245 0.97956 0.96286 1.23446 1.00521 0.99738 0.95002 0.93457 0.78120 0.91357 0.91453 0.91463 0.91218 0.76142 0.84028 0.81912 0.82000 0.83451 0.91253 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.88 5.31 -52.64 -0.28 -17.16 16 10 C 0.17 3.14 4.56 -67.12 -0.31 2.83 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.17 -2.67 7.44 -25.82 -0.19 -2.86 16 13 C -0.12 -1.70 3.64 -89.71 -0.33 -2.03 16 14 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.13 1.64 5.51 -4.05 -0.02 1.62 16 16 N -0.71 -8.27 5.51 -61.16 -0.34 -8.61 16 17 C 0.55 7.08 7.80 -12.19 -0.10 6.98 16 18 O -0.53 -8.53 16.45 5.35 0.09 -8.44 16 19 C -0.09 -0.91 5.91 -104.65 -0.62 -1.53 16 20 C -0.14 -1.24 9.62 -39.02 -0.38 -1.61 16 21 C 0.10 0.84 11.17 -17.59 -0.20 0.65 16 22 N -0.47 -4.73 10.34 -13.30 -0.14 -4.86 16 23 C 0.09 0.82 11.17 -17.59 -0.20 0.62 16 24 C -0.12 -1.13 9.68 -39.02 -0.38 -1.51 16 25 C -0.15 -2.25 7.38 -25.92 -0.19 -2.44 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.38 9.72 7.90 -40.82 -0.32 9.39 16 28 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.40 3.94 6.62 -40.82 -0.27 3.67 16 33 H 0.14 0.96 6.54 -52.49 -0.34 0.62 16 34 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.15 1.32 7.74 -52.49 -0.41 0.92 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -32.04 326.46 -8.27 -40.31 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.08 Total: 10.00 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.14 Total: -6.39 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.03 Total: -57.19 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.04 -8.27 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086292818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.157 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds