Wall clock time and date at job start Mon Mar 30 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99591 * 2 1 4 4 H 1.48493 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47106 * 300.00143 * 3 2 1 6 6 H 1.48500 * 109.47127 * 60.00160 * 3 2 1 7 7 C 1.38809 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99548 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85074 * 336.19921 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50245 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.46494 * 109.47391 * 87.55384 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21517 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.48146 * 120.00317 * 179.97438 * 17 16 15 20 20 C 1.39817 * 120.92076 * 359.71382 * 19 17 16 21 21 C 1.38151 * 119.00043 * 179.75103 * 20 19 17 22 22 N 1.31813 * 120.89761 * 0.53859 * 21 20 19 23 23 C 1.31818 * 122.04812 * 359.73850 * 22 21 20 24 24 C 1.38148 * 120.89290 * 359.97330 * 23 22 21 25 25 C 1.53781 * 113.61619 * 205.00090 * 10 9 7 26 26 H 0.96993 * 120.00590 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 29 29 H 1.08994 * 113.61387 * 334.57115 * 12 10 9 30 30 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 31 31 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 32 32 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 33 33 H 1.08000 * 120.50212 * 0.02562 * 20 19 17 34 34 H 1.08004 * 119.55468 * 180.27625 * 21 20 19 35 35 H 1.07996 * 119.54961 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.49687 * 180.02562 * 24 23 22 37 37 H 1.09002 * 113.61445 * 25.43587 * 25 10 9 38 38 H 1.09002 * 113.61408 * 156.25317 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0658 -3.5637 -0.4048 12 6 1.9993 -4.4020 1.3444 13 6 0.7201 -5.0817 0.8225 14 1 -0.1914 -4.5281 1.0475 15 6 0.6210 -6.5648 1.1850 16 7 -0.0114 -6.7051 2.4989 17 6 -0.2039 -7.9301 3.0268 18 8 0.1467 -8.9183 2.4127 19 6 -0.8430 -8.0720 4.3558 20 6 -1.2485 -6.9480 5.0817 21 6 -1.8452 -7.1265 6.3149 22 7 -2.0237 -8.3342 6.8119 23 6 -1.6512 -9.4196 6.1634 24 6 -1.0521 -9.3334 4.9215 25 6 1.2604 -4.8288 -0.5950 26 1 -0.4850 0.8399 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 2.8281 -5.0932 1.4971 29 1 1.8293 -3.7478 2.1994 30 1 0.0218 -7.0826 0.4361 31 1 1.6204 -6.9992 1.2146 32 1 -0.2910 -5.9163 2.9893 33 1 -1.1016 -5.9553 4.6824 34 1 -2.1659 -6.2646 6.8812 35 1 -1.8167 -10.3894 6.6089 36 1 -0.7499 -10.2270 4.3956 37 1 0.4941 -4.5190 -1.3055 38 1 1.8874 -5.6360 -0.9738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086292818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:46 Heat of formation + Delta-G solvation = 8.098045 kcal Electronic energy + Delta-G solvation = -19995.270385 eV Core-core repulsion = 16837.607430 eV Total energy + Delta-G solvation = -3157.662954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64774 -40.44409 -39.67068 -36.13308 -35.07942 -33.71469 -32.30355 -31.96368 -28.92649 -26.43546 -26.04251 -25.25354 -24.40216 -23.06810 -21.84921 -20.03076 -19.42091 -19.03057 -17.76833 -16.81824 -16.71051 -16.55830 -16.47567 -16.40391 -15.79957 -15.50857 -15.00234 -14.85103 -14.66588 -14.56790 -14.41953 -13.75200 -13.29455 -12.95694 -12.93097 -12.69851 -12.66402 -12.13164 -12.05475 -11.68753 -11.49506 -11.32235 -11.02336 -10.94899 -10.82833 -10.53208 -10.21439 -10.16410 -8.99686 -7.95498 -5.23524 -0.37238 0.08051 1.48383 1.49013 1.58729 1.76939 1.98060 2.55846 2.83095 3.37207 3.44350 3.49689 3.70198 3.75756 3.78964 3.89638 3.93623 4.05722 4.14344 4.32168 4.39313 4.52636 4.68980 4.72271 4.80162 4.80961 4.93289 4.99263 5.02571 5.10249 5.21513 5.34361 5.45084 5.53532 5.59567 5.65994 6.28568 6.36487 6.88269 7.00279 7.33778 8.10779 8.32957 9.27880 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.003187 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.463499 B = 8784.296352 C = 9645.318650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.059 0.941 12 C -0.154 4.154 13 C -0.103 4.103 14 H 0.084 0.916 15 C 0.139 3.861 16 N -0.707 5.707 17 C 0.554 3.446 18 O -0.571 6.571 19 C -0.103 4.103 20 C -0.137 4.137 21 C 0.093 3.907 22 N -0.491 5.491 23 C 0.095 3.905 24 C -0.124 4.124 25 C -0.135 4.135 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.149 0.851 37 H 0.058 0.942 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -17.093 10.275 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.077 0.923 12 C -0.194 4.194 13 C -0.122 4.122 14 H 0.102 0.898 15 C 0.016 3.984 16 N -0.358 5.358 17 C 0.341 3.659 18 O -0.452 6.452 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.063 4.063 22 N -0.200 5.200 23 C -0.061 4.061 24 C -0.145 4.145 25 C -0.174 4.174 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.178 0.822 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.167 0.833 37 H 0.077 0.923 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.969 -17.712 10.601 20.736 hybrid contribution 0.179 1.577 -0.789 1.773 sum -1.789 -16.135 9.812 18.969 Atomic orbital electron populations 1.69805 1.06499 1.25988 1.59596 1.25521 0.96370 1.00954 1.03819 0.85114 0.78284 0.80023 0.76590 1.19114 1.22232 1.22075 1.19690 0.91502 0.85181 1.40852 0.90615 1.42309 1.05355 1.00552 1.87606 1.21383 0.95069 0.84911 0.95325 0.92265 1.23758 0.97264 0.99218 0.99200 1.22538 0.98481 0.93460 0.97694 0.89776 1.21398 0.98034 0.95828 0.83185 1.45919 1.60905 1.08029 1.20965 1.18488 0.78483 0.83320 0.85567 1.90751 1.52696 1.38715 1.63005 1.20420 1.00648 0.95791 0.94525 1.22627 0.97575 0.99529 0.96050 1.23258 0.94347 0.95699 0.93011 1.67644 1.16526 0.99804 1.36064 1.23238 0.93409 0.98541 0.90962 1.22459 0.97471 0.97790 0.96768 1.23351 0.99991 0.98670 0.95373 0.94022 0.79299 0.89034 0.93122 0.91405 0.90957 0.75039 0.82239 0.79481 0.79351 0.83303 0.92339 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.52 13.06 21.65 0.28 -57.23 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -12.91 9.97 84.03 0.84 -12.08 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.53 5.31 -320.44 -1.70 -36.23 16 10 C 0.14 5.23 4.56 45.52 0.21 5.44 16 11 H 0.06 2.19 8.10 -2.38 -0.02 2.17 16 12 C -0.15 -4.60 7.44 31.18 0.23 -4.36 16 13 C -0.10 -2.72 3.64 -10.20 -0.04 -2.76 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.14 3.23 5.51 86.38 0.48 3.70 16 16 N -0.71 -15.26 5.51 -465.70 -2.57 -17.83 16 17 C 0.55 13.59 7.80 86.88 0.68 14.27 16 18 O -0.57 -17.87 16.45 -3.77 -0.06 -17.93 16 19 C -0.10 -2.07 5.91 -19.88 -0.12 -2.18 16 20 C -0.14 -2.17 9.62 22.63 0.22 -1.95 16 21 C 0.09 1.43 11.17 84.67 0.95 2.38 16 22 N -0.49 -8.94 10.34 -196.00 -2.03 -10.96 16 23 C 0.09 1.49 11.17 84.67 0.95 2.44 16 24 C -0.12 -2.27 9.68 22.63 0.22 -2.05 16 25 C -0.13 -3.88 7.38 31.12 0.23 -3.65 16 26 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.37 19.21 7.90 -92.71 -0.73 18.48 16 28 H 0.09 2.34 7.90 -2.39 -0.02 2.32 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.70 7.85 -2.38 -0.02 1.68 16 32 H 0.41 7.33 6.62 -92.71 -0.61 6.71 16 33 H 0.16 1.82 6.54 -2.91 -0.02 1.80 16 34 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.15 2.60 7.74 -2.91 -0.02 2.57 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -68.68 326.46 0.99 -67.69 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.26 Total: 29.95 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.30 Total: -4.49 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.01 Total: -122.26 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.06 Total: -17.93 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.68 0.99 -67.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086292818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.788 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds