Wall clock time and date at job start Mon Mar 30 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48488 * 109.47324 * 269.99874 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00221 * 3 2 1 6 6 H 1.48506 * 109.46850 * 149.99721 * 3 2 1 7 7 C 1.38809 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99842 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99724 * 179.97438 * 9 7 2 11 11 C 1.53785 * 113.61008 * 154.99870 * 10 9 7 12 12 C 1.53778 * 87.08077 * 89.11734 * 11 10 9 13 13 C 1.53000 * 113.61732 * 139.97875 * 12 11 10 14 14 N 1.46492 * 109.47292 * 176.53035 * 13 12 11 15 15 C 1.34781 * 119.99838 * 180.02562 * 14 13 12 16 16 O 1.21514 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99986 * 179.97438 * 15 14 13 18 18 C 1.39302 * 119.72256 * 180.02562 * 17 15 14 19 19 C 1.38596 * 119.05902 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48529 * 359.97438 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.28231 * 20 19 18 22 22 N 1.31533 * 120.89638 * 359.41561 * 21 20 19 23 23 C 1.53778 * 87.17361 * 25.38917 * 12 11 10 24 24 H 0.96997 * 120.00082 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99584 * 359.97438 * 9 7 2 26 26 H 1.08998 * 112.85324 * 23.80770 * 10 9 7 27 27 H 1.09000 * 113.61737 * 334.56627 * 11 10 9 28 28 H 1.09005 * 113.61790 * 203.66623 * 11 10 9 29 29 H 1.09003 * 113.61455 * 270.80048 * 12 11 10 30 30 H 1.09008 * 109.46748 * 56.52675 * 13 12 11 31 31 H 1.09005 * 109.47265 * 296.53511 * 13 12 11 32 32 H 0.97001 * 120.00364 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.47545 * 359.94755 * 18 17 15 34 34 H 1.07991 * 120.75611 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.54941 * 179.70362 * 21 20 19 37 37 H 1.09008 * 113.61610 * 89.15444 * 23 12 11 38 38 H 1.08998 * 113.61991 * 220.06101 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.3999 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.5264 -2.3655 -0.5950 12 6 6.0125 -2.0237 0.8233 13 6 7.3467 -2.6776 1.1883 14 7 7.7633 -2.2277 2.5187 15 6 8.9174 -2.6763 3.0510 16 8 9.6126 -3.4535 2.4272 17 6 9.3392 -2.2208 4.3964 18 6 10.5334 -2.6877 4.9408 19 6 10.9148 -2.2522 6.2001 20 6 10.0884 -1.3641 6.8710 21 6 8.9118 -0.9454 6.2710 22 7 8.5767 -1.3703 5.0721 23 6 4.7868 -2.7912 1.3462 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.5282 -3.2968 -0.4059 27 1 5.6415 -1.5468 -1.3053 28 1 5.9128 -3.3122 -0.9727 29 1 5.9883 -0.9573 1.0480 30 1 8.1025 -2.3944 0.4556 31 1 7.2314 -3.7616 1.1908 32 1 7.2089 -1.6064 3.0163 33 1 11.1530 -3.3795 4.3897 34 1 11.8353 -2.5962 6.6480 35 1 10.3567 -1.0060 7.8539 36 1 8.2633 -0.2574 6.7928 37 1 4.9706 -3.8546 1.5002 38 1 4.3057 -2.3157 2.2009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090887270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:08 Heat of formation + Delta-G solvation = 33.880497 kcal Electronic energy + Delta-G solvation = -20083.778553 eV Core-core repulsion = 16927.233610 eV Total energy + Delta-G solvation = -3156.544943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83557 -39.36122 -38.45582 -34.83396 -33.35918 -32.81142 -31.78238 -30.63095 -27.79387 -25.17525 -24.78754 -23.84650 -23.27449 -21.74229 -20.87189 -18.87545 -18.06499 -17.63415 -17.02614 -16.36670 -15.70339 -15.55109 -15.25234 -14.89396 -14.47694 -14.15514 -14.01371 -13.60740 -13.48739 -13.32376 -12.75954 -12.49304 -12.33960 -12.03888 -11.57677 -11.35666 -10.91365 -10.57117 -10.49217 -10.36769 -10.21666 -10.06736 -9.81299 -9.65506 -9.59539 -9.51669 -9.04374 -8.90574 -7.30184 -5.79836 -3.15950 0.31997 0.83327 2.55474 2.99645 3.35435 3.38288 3.43593 3.58610 3.86809 4.42005 4.49121 4.56206 4.60296 4.67907 4.92210 4.96231 5.03342 5.11843 5.34027 5.39723 5.43641 5.52326 5.58852 5.69885 5.76482 5.85839 5.91984 6.13408 6.18382 6.24213 6.33453 6.49671 6.64693 6.74713 6.90851 7.26455 7.55812 7.98207 8.06949 8.39957 9.17799 9.90088 10.09365 11.38317 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.003522 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.876421 B = 7947.689637 C = 8761.143981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.148 4.148 12 C -0.124 4.124 13 C 0.129 3.871 14 N -0.702 5.702 15 C 0.566 3.434 16 O -0.539 6.539 17 C 0.081 3.919 18 C -0.114 4.114 19 C -0.083 4.083 20 C -0.153 4.153 21 C 0.099 3.901 22 N -0.458 5.458 23 C -0.167 4.167 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.072 0.928 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.494 -3.669 12.348 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.188 4.188 12 C -0.143 4.143 13 C 0.006 3.994 14 N -0.353 5.353 15 C 0.351 3.649 16 O -0.417 6.417 17 C -0.058 4.058 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.173 4.173 21 C -0.060 4.060 22 N -0.169 5.169 23 C -0.208 4.208 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.898 -3.996 11.433 25.024 hybrid contribution 1.136 1.353 0.854 1.962 sum 23.034 -2.643 12.287 26.239 Atomic orbital electron populations 1.69701 1.05100 1.25890 1.57299 1.24680 0.95252 0.97221 1.01906 0.86560 0.79200 0.84998 0.77828 1.21021 1.21669 1.20334 1.19117 0.80420 0.94846 1.43205 0.89019 1.42522 1.03959 1.01646 1.88893 1.21039 0.90085 0.89882 0.92884 1.23460 0.98765 1.01596 0.94939 1.22758 0.92578 1.00205 0.98712 1.21555 0.96089 0.99284 0.82494 1.45928 1.22368 1.47513 1.19454 1.17899 0.81589 0.81003 0.84441 1.90776 1.54106 1.35243 1.61535 1.21241 0.93095 0.96049 0.95377 1.22154 0.96288 0.99290 0.95737 1.21651 0.99715 0.95512 0.93999 1.22408 0.95642 0.97780 1.01459 1.22864 0.94994 0.97538 0.90649 1.67589 1.31965 1.09174 1.08218 1.23888 0.96487 0.98817 1.01582 0.92991 0.80504 0.91021 0.91388 0.89945 0.89130 0.91523 0.91123 0.75084 0.83401 0.84041 0.84162 0.81866 0.90949 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -6.88 10.45 -15.06 -0.16 -7.04 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.73 -16.98 5.11 -52.55 -0.27 -17.25 16 10 C 0.17 3.23 4.57 -67.03 -0.31 2.93 16 11 C -0.15 -2.22 7.39 -25.92 -0.19 -2.41 16 12 C -0.12 -1.78 3.62 -89.81 -0.33 -2.11 16 13 C 0.13 1.70 5.50 -4.05 -0.02 1.68 16 14 N -0.70 -9.27 5.55 -61.14 -0.34 -9.61 16 15 C 0.57 7.90 7.81 -12.18 -0.10 7.81 16 16 O -0.54 -8.77 16.32 5.35 0.09 -8.68 16 17 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 18 C -0.11 -1.09 9.63 -39.05 -0.38 -1.47 16 19 C -0.08 -0.56 10.17 -39.30 -0.40 -0.96 16 20 C -0.15 -0.96 10.11 -39.32 -0.40 -1.36 16 21 C 0.10 0.81 11.18 -17.56 -0.20 0.61 16 22 N -0.46 -5.15 9.54 -9.80 -0.09 -5.25 16 23 C -0.17 -2.70 7.44 -25.83 -0.19 -2.89 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.36 8.27 5.76 -40.82 -0.24 8.03 16 26 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 32 H 0.41 5.24 7.80 -40.82 -0.32 4.92 16 33 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 34 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.07 1.06 7.92 -51.92 -0.41 0.64 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -33.39 325.40 -8.13 -41.52 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.17 Total: 10.28 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.32 Total: -4.75 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.07 Total: -60.48 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.39 -8.13 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090887270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.401 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds