Wall clock time and date at job start Mon Mar 30 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48488 * 109.47324 * 269.99874 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00221 * 3 2 1 6 6 H 1.48506 * 109.46850 * 149.99721 * 3 2 1 7 7 C 1.38809 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99842 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99724 * 179.97438 * 9 7 2 11 11 C 1.53785 * 113.61008 * 154.99870 * 10 9 7 12 12 C 1.53778 * 87.08077 * 89.11734 * 11 10 9 13 13 C 1.53000 * 113.61732 * 139.97875 * 12 11 10 14 14 N 1.46492 * 109.47292 * 176.53035 * 13 12 11 15 15 C 1.34781 * 119.99838 * 180.02562 * 14 13 12 16 16 O 1.21514 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99986 * 179.97438 * 15 14 13 18 18 C 1.39302 * 119.72256 * 180.02562 * 17 15 14 19 19 C 1.38596 * 119.05902 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48529 * 359.97438 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.28231 * 20 19 18 22 22 N 1.31533 * 120.89638 * 359.41561 * 21 20 19 23 23 C 1.53778 * 87.17361 * 25.38917 * 12 11 10 24 24 H 0.96997 * 120.00082 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99584 * 359.97438 * 9 7 2 26 26 H 1.08998 * 112.85324 * 23.80770 * 10 9 7 27 27 H 1.09000 * 113.61737 * 334.56627 * 11 10 9 28 28 H 1.09005 * 113.61790 * 203.66623 * 11 10 9 29 29 H 1.09003 * 113.61455 * 270.80048 * 12 11 10 30 30 H 1.09008 * 109.46748 * 56.52675 * 13 12 11 31 31 H 1.09005 * 109.47265 * 296.53511 * 13 12 11 32 32 H 0.97001 * 120.00364 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.47545 * 359.94755 * 18 17 15 34 34 H 1.07991 * 120.75611 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.54941 * 179.70362 * 21 20 19 37 37 H 1.09008 * 113.61610 * 89.15444 * 23 12 11 38 38 H 1.08998 * 113.61991 * 220.06101 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.3999 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.5264 -2.3655 -0.5950 12 6 6.0125 -2.0237 0.8233 13 6 7.3467 -2.6776 1.1883 14 7 7.7633 -2.2277 2.5187 15 6 8.9174 -2.6763 3.0510 16 8 9.6126 -3.4535 2.4272 17 6 9.3392 -2.2208 4.3964 18 6 10.5334 -2.6877 4.9408 19 6 10.9148 -2.2522 6.2001 20 6 10.0884 -1.3641 6.8710 21 6 8.9118 -0.9454 6.2710 22 7 8.5767 -1.3703 5.0721 23 6 4.7868 -2.7912 1.3462 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.5282 -3.2968 -0.4059 27 1 5.6415 -1.5468 -1.3053 28 1 5.9128 -3.3122 -0.9727 29 1 5.9883 -0.9573 1.0480 30 1 8.1025 -2.3944 0.4556 31 1 7.2314 -3.7616 1.1908 32 1 7.2089 -1.6064 3.0163 33 1 11.1530 -3.3795 4.3897 34 1 11.8353 -2.5962 6.6480 35 1 10.3567 -1.0060 7.8539 36 1 8.2633 -0.2574 6.7928 37 1 4.9706 -3.8546 1.5002 38 1 4.3057 -2.3157 2.2009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090887270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:07 Heat of formation + Delta-G solvation = 9.977762 kcal Electronic energy + Delta-G solvation = -20084.815054 eV Core-core repulsion = 16927.233610 eV Total energy + Delta-G solvation = -3157.581444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62676 -40.46004 -39.63579 -36.15349 -35.04586 -33.56529 -32.72092 -32.34491 -29.02563 -26.47406 -25.90029 -25.00211 -24.39560 -23.10379 -21.82051 -20.27579 -19.58688 -19.07072 -17.81068 -17.10872 -16.72446 -16.60475 -16.46363 -16.09832 -15.98586 -15.26884 -15.18696 -14.79622 -14.64102 -14.48405 -14.10466 -13.98433 -13.38048 -13.11214 -13.02797 -12.91446 -12.70577 -12.20003 -11.89479 -11.71694 -11.62420 -11.34423 -10.99648 -10.96657 -10.87277 -10.53374 -10.33371 -10.03095 -9.30181 -8.03159 -5.36783 -0.37272 0.24940 1.37378 1.40971 1.47972 1.67357 2.05262 2.47719 2.86484 3.11978 3.27051 3.50870 3.71107 3.73982 3.89123 3.97453 3.98328 4.04905 4.09828 4.25954 4.35885 4.49178 4.67504 4.71826 4.76519 4.91855 4.95278 5.05986 5.07773 5.15120 5.22515 5.30544 5.44246 5.53059 5.63451 5.80247 6.22409 6.34920 6.77566 7.07095 7.07363 7.84273 8.02738 9.18417 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.003522 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.876421 B = 7947.689637 C = 8761.143981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.734 5.734 10 C 0.147 3.853 11 C -0.130 4.130 12 C -0.107 4.107 13 C 0.136 3.864 14 N -0.701 5.701 15 C 0.563 3.437 16 O -0.571 6.571 17 C 0.048 3.952 18 C -0.122 4.122 19 C -0.079 4.079 20 C -0.135 4.135 21 C 0.086 3.914 22 N -0.484 5.484 23 C -0.157 4.157 24 H 0.258 0.742 25 H 0.366 0.634 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.091 0.909 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.595 -2.938 13.977 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.376 5.376 10 C 0.037 3.963 11 C -0.169 4.169 12 C -0.126 4.126 13 C 0.013 3.987 14 N -0.351 5.351 15 C 0.349 3.651 16 O -0.451 6.451 17 C -0.088 4.088 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.155 4.155 21 C -0.074 4.074 22 N -0.196 5.196 23 C -0.197 4.197 24 H 0.067 0.933 25 H 0.200 0.800 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.252 0.748 33 H 0.163 0.837 34 H 0.194 0.806 35 H 0.197 0.803 36 H 0.204 0.796 37 H 0.110 0.890 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.052 -3.298 13.064 28.446 hybrid contribution 0.177 1.017 0.445 1.124 sum 25.230 -2.281 13.509 28.710 Atomic orbital electron populations 1.69886 1.07161 1.26716 1.59715 1.25513 0.96126 1.01287 1.02680 0.85407 0.78639 0.79596 0.78125 1.20405 1.22249 1.17601 1.19078 0.82577 0.93506 1.41170 0.92475 1.42457 1.02306 1.03540 1.89289 1.21375 0.91654 0.87849 0.95411 1.23353 0.95220 1.03156 0.95196 1.22579 0.92403 0.99698 0.97914 1.21441 0.95320 0.99157 0.82806 1.45922 1.22379 1.47438 1.19393 1.18295 0.81185 0.80379 0.85244 1.90740 1.54978 1.36732 1.62673 1.21023 0.94653 0.98169 0.94998 1.22291 0.95597 0.99411 0.97060 1.22077 1.00838 0.94819 0.92683 1.22854 0.94106 0.96018 1.02502 1.23418 0.96308 0.97771 0.89914 1.67507 1.32658 1.09722 1.09712 1.23754 0.96675 1.00169 0.99093 0.93309 0.80009 0.92150 0.91222 0.87206 0.89602 0.91046 0.90986 0.74845 0.83695 0.80633 0.80285 0.79591 0.89038 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 45.42 27.74 68.60 1.90 47.32 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 7 C -0.23 -13.27 10.45 84.03 0.88 -12.39 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.73 -33.90 5.11 -320.17 -1.64 -35.53 16 10 C 0.15 5.39 4.57 45.58 0.21 5.60 16 11 C -0.13 -3.61 7.39 31.12 0.23 -3.38 16 12 C -0.11 -2.88 3.62 -10.27 -0.04 -2.92 16 13 C 0.14 3.36 5.50 86.38 0.47 3.84 16 14 N -0.70 -17.99 5.55 -465.65 -2.58 -20.57 16 15 C 0.56 15.62 7.81 86.88 0.68 16.29 16 16 O -0.57 -18.62 16.32 -3.76 -0.06 -18.68 16 17 C 0.05 1.13 6.75 41.91 0.28 1.41 16 18 C -0.12 -2.20 9.63 22.61 0.22 -1.98 16 19 C -0.08 -0.82 10.17 22.45 0.23 -0.59 16 20 C -0.14 -1.18 10.11 22.44 0.23 -0.95 16 21 C 0.09 1.19 11.18 84.81 0.95 2.13 16 22 N -0.48 -10.35 9.54 -184.91 -1.76 -12.12 16 23 C -0.16 -4.90 7.44 31.18 0.23 -4.67 16 24 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.37 16.16 5.76 -92.71 -0.53 15.63 16 26 H 0.06 2.33 8.10 -2.39 -0.02 2.31 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 2.49 8.10 -2.38 -0.02 2.47 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.07 1.79 7.88 -2.38 -0.02 1.77 16 32 H 0.41 10.26 7.80 -92.71 -0.72 9.54 16 33 H 0.15 2.57 7.64 -2.91 -0.02 2.55 16 34 H 0.18 0.57 8.06 -2.92 -0.02 0.54 16 35 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 36 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.09 2.52 7.92 -2.38 -0.02 2.50 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.08 325.40 0.96 -74.12 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.24 Total: 29.56 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.04 Total: -0.97 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -5.68 Total: -131.35 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Total: -75.08 0.96 -74.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090887270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.099 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds