Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99323 * 3 2 1 6 6 H 1.48492 * 109.47273 * 59.99352 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46502 * 109.46813 * 272.49316 * 13 12 11 15 15 C 1.34780 * 119.99751 * 179.97438 * 14 13 12 16 16 O 1.21549 * 119.99575 * 0.02562 * 15 14 13 17 17 C 1.47841 * 119.99699 * 179.97438 * 15 14 13 18 18 C 1.40025 * 120.55541 * 179.72430 * 17 15 14 19 19 C 1.38358 * 118.28707 * 179.73846 * 18 17 15 20 20 C 1.38353 * 119.30105 * 0.55899 * 19 18 17 21 21 N 1.31925 * 121.08100 * 359.69822 * 20 19 18 22 22 C 1.31696 * 121.87895 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 24 24 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 26 26 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 27 27 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 28 28 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 29 29 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 30 30 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 31 31 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 32 32 H 0.97002 * 119.99977 * 0.02562 * 14 13 12 33 33 H 1.07997 * 120.85499 * 0.02562 * 18 17 15 34 34 H 1.07993 * 120.34803 * 180.26286 * 19 18 17 35 35 H 1.07998 * 119.45901 * 179.72680 * 20 19 18 36 36 H 1.07997 * 119.71742 * 179.97438 * 22 21 20 37 37 H 1.09001 * 113.61158 * 203.66864 * 23 10 9 38 38 H 1.08998 * 113.61196 * 334.56885 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6478 -6.5453 -1.2582 14 7 0.0466 -6.6654 -2.5888 15 6 -0.1348 -7.8823 -3.1390 16 8 0.2001 -8.8801 -2.5310 17 6 -0.7420 -8.0034 -4.4815 18 6 -0.9306 -9.2615 -5.0666 19 6 -1.5082 -9.3207 -6.3224 20 6 -1.8668 -8.1456 -6.9588 21 7 -1.6721 -6.9737 -6.3852 22 6 -1.1312 -6.8659 -5.1893 23 6 1.2467 -4.8365 0.5617 24 1 -0.4849 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.0559 -3.5695 0.4304 27 1 1.8839 -3.7164 -2.2045 28 1 2.8651 -5.0720 -1.4967 29 1 -0.1661 -4.5106 -1.1097 30 1 1.6471 -6.9807 -1.2704 31 1 0.0303 -7.0731 -0.5315 32 1 -0.2203 -5.8690 -3.0741 33 1 -0.6371 -10.1627 -4.5489 34 1 -1.6730 -10.2737 -6.8029 35 1 -2.3137 -8.1886 -7.9410 36 1 -0.9875 -5.8886 -4.7528 37 1 1.8648 -5.6494 0.9428 38 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090890730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = 29.595061 kcal Electronic energy + Delta-G solvation = -20009.426325 eV Core-core repulsion = 16852.695551 eV Total energy + Delta-G solvation = -3156.730774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82422 -39.35351 -38.40315 -34.84079 -33.30019 -32.83247 -31.85285 -30.13051 -27.54161 -25.10531 -24.68727 -23.88703 -23.50769 -21.74600 -20.86997 -18.70644 -18.09532 -17.30269 -17.06965 -16.67940 -15.61819 -15.47002 -15.16697 -14.88767 -14.32649 -14.12315 -13.96516 -13.59400 -13.38911 -13.22168 -12.94498 -12.53720 -12.30835 -11.95108 -11.43043 -11.06929 -10.87971 -10.57720 -10.45713 -10.27331 -10.15158 -9.97753 -9.72553 -9.71425 -9.59951 -9.50304 -9.07816 -8.91149 -7.02621 -5.83143 -3.12257 0.32746 0.85971 2.66953 3.00449 3.40229 3.46307 3.48348 3.56267 3.96462 4.41231 4.48443 4.53794 4.56605 4.67122 4.99549 5.00227 5.05113 5.19159 5.24726 5.42914 5.57079 5.64936 5.66600 5.72555 5.83288 5.91220 6.06145 6.17734 6.18213 6.31199 6.33973 6.55150 6.71180 6.85684 7.00855 7.35394 7.50924 7.67517 8.02664 8.36029 9.46900 10.04067 10.38246 11.39333 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.003218 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.991196 B = 8698.370382 C = 9567.697123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.169 4.169 12 C -0.121 4.121 13 C 0.131 3.869 14 N -0.716 5.716 15 C 0.560 3.440 16 O -0.540 6.540 17 C -0.185 4.185 18 C -0.019 4.019 19 C -0.181 4.181 20 C 0.119 3.881 21 N -0.486 5.486 22 C 0.136 3.864 23 C -0.147 4.147 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -18.178 -10.667 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 C -0.210 4.210 12 C -0.140 4.140 13 C 0.008 3.992 14 N -0.367 5.367 15 C 0.346 3.654 16 O -0.419 6.419 17 C -0.191 4.191 18 C -0.045 4.045 19 C -0.201 4.201 20 C -0.038 4.038 21 N -0.194 5.194 22 C -0.022 4.022 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.096 0.904 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.544 -17.936 -10.626 21.002 hybrid contribution 0.152 0.514 0.098 0.545 sum -2.392 -17.421 -10.528 20.496 Atomic orbital electron populations 1.69668 1.05137 1.25700 1.57510 1.24766 0.95546 0.97805 1.02766 0.86103 0.78824 0.83967 0.77210 1.20488 1.21814 1.21825 1.19328 0.91151 0.83942 1.42882 0.90941 1.42180 1.05685 0.99448 1.87182 1.21050 0.95051 0.85605 0.92793 1.23948 0.95444 0.99623 1.02018 1.22783 0.99722 0.92833 0.98638 1.21550 0.98113 0.97379 0.82169 1.46008 1.62815 1.07861 1.20016 1.18039 0.78623 0.83732 0.85044 1.90770 1.51278 1.36683 1.63139 1.21081 1.05388 0.95702 0.96893 1.21758 0.91485 0.97544 0.93723 1.22184 1.01295 1.00587 0.96040 1.23047 0.93781 0.87536 0.99410 1.67740 1.13019 1.28080 1.10587 1.23083 0.91175 0.98072 0.89902 1.23421 1.00611 0.99692 0.94905 0.93469 0.78109 0.92027 0.91404 0.91368 0.88774 0.91278 0.91522 0.76223 0.83513 0.83980 0.82174 0.82174 0.90390 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.09 5.31 -52.64 -0.28 -17.37 16 10 C 0.17 3.18 4.55 -67.12 -0.31 2.87 16 11 C -0.17 -2.73 7.45 -25.78 -0.19 -2.92 16 12 C -0.12 -1.73 3.65 -89.67 -0.33 -2.06 16 13 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 14 N -0.72 -8.51 5.51 -61.25 -0.34 -8.84 16 15 C 0.56 7.27 7.78 -12.33 -0.10 7.17 16 16 O -0.54 -8.68 16.42 5.32 0.09 -8.59 16 17 C -0.19 -2.02 5.89 -104.82 -0.62 -2.64 16 18 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 19 C -0.18 -1.31 10.10 -39.49 -0.40 -1.71 16 20 C 0.12 0.95 11.17 -17.47 -0.20 0.76 16 21 N -0.49 -5.16 10.35 -12.91 -0.13 -5.29 16 22 C 0.14 1.40 10.71 -17.13 -0.18 1.22 16 23 C -0.15 -2.27 7.38 -25.92 -0.19 -2.46 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.38 9.84 7.90 -40.82 -0.32 9.51 16 26 H 0.06 1.19 8.11 -51.93 -0.42 0.76 16 27 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 28 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 0.91 7.85 -51.93 -0.41 0.51 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 4.09 6.54 -40.82 -0.27 3.83 16 33 H 0.15 1.29 7.74 -52.49 -0.41 0.89 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.16 1.37 6.42 -52.49 -0.34 1.04 16 37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -32.43 326.28 -8.27 -40.70 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.07 Total: 10.14 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.15 Total: -5.83 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.03 Total: -58.33 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.43 -8.27 -40.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090890730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.299 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds