Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99323 * 3 2 1 6 6 H 1.48492 * 109.47273 * 59.99352 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46502 * 109.46813 * 272.49316 * 13 12 11 15 15 C 1.34780 * 119.99751 * 179.97438 * 14 13 12 16 16 O 1.21549 * 119.99575 * 0.02562 * 15 14 13 17 17 C 1.47841 * 119.99699 * 179.97438 * 15 14 13 18 18 C 1.40025 * 120.55541 * 179.72430 * 17 15 14 19 19 C 1.38358 * 118.28707 * 179.73846 * 18 17 15 20 20 C 1.38353 * 119.30105 * 0.55899 * 19 18 17 21 21 N 1.31925 * 121.08100 * 359.69822 * 20 19 18 22 22 C 1.31696 * 121.87895 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 24 24 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 26 26 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 27 27 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 28 28 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 29 29 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 30 30 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 31 31 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 32 32 H 0.97002 * 119.99977 * 0.02562 * 14 13 12 33 33 H 1.07997 * 120.85499 * 0.02562 * 18 17 15 34 34 H 1.07993 * 120.34803 * 180.26286 * 19 18 17 35 35 H 1.07998 * 119.45901 * 179.72680 * 20 19 18 36 36 H 1.07997 * 119.71742 * 179.97438 * 22 21 20 37 37 H 1.09001 * 113.61158 * 203.66864 * 23 10 9 38 38 H 1.08998 * 113.61196 * 334.56885 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6478 -6.5453 -1.2582 14 7 0.0466 -6.6654 -2.5888 15 6 -0.1348 -7.8823 -3.1390 16 8 0.2001 -8.8801 -2.5310 17 6 -0.7420 -8.0034 -4.4815 18 6 -0.9306 -9.2615 -5.0666 19 6 -1.5082 -9.3207 -6.3224 20 6 -1.8668 -8.1456 -6.9588 21 7 -1.6721 -6.9737 -6.3852 22 6 -1.1312 -6.8659 -5.1893 23 6 1.2467 -4.8365 0.5617 24 1 -0.4849 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.0559 -3.5695 0.4304 27 1 1.8839 -3.7164 -2.2045 28 1 2.8651 -5.0720 -1.4967 29 1 -0.1661 -4.5106 -1.1097 30 1 1.6471 -6.9807 -1.2704 31 1 0.0303 -7.0731 -0.5315 32 1 -0.2203 -5.8690 -3.0741 33 1 -0.6371 -10.1627 -4.5489 34 1 -1.6730 -10.2737 -6.8029 35 1 -2.3137 -8.1886 -7.9410 36 1 -0.9875 -5.8886 -4.7528 37 1 1.8648 -5.6494 0.9428 38 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090890730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = 7.303879 kcal Electronic energy + Delta-G solvation = -20010.392943 eV Core-core repulsion = 16852.695551 eV Total energy + Delta-G solvation = -3157.697392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64526 -40.41619 -39.62662 -36.10731 -35.04158 -33.56564 -32.71651 -31.88328 -28.78960 -26.43640 -25.94901 -25.16268 -24.48791 -23.03846 -21.81921 -19.97200 -19.39084 -18.95863 -17.86324 -17.51781 -16.75820 -16.54263 -16.42879 -16.03769 -15.79186 -15.43631 -15.01166 -14.68135 -14.62039 -14.40723 -14.13370 -13.72814 -13.28208 -13.19150 -12.94841 -12.91459 -12.64873 -12.12702 -12.05118 -11.66855 -11.48697 -11.28372 -11.00037 -10.93520 -10.80993 -10.48688 -10.34862 -10.05418 -8.99452 -7.95302 -5.23346 -0.40698 0.18471 1.48406 1.48674 1.58680 1.76684 2.05418 2.55961 2.82444 3.28621 3.37676 3.66369 3.71808 3.77835 3.79959 3.84391 3.94546 4.03350 4.15006 4.32678 4.40365 4.43250 4.64274 4.72738 4.75527 4.93697 4.99092 4.99707 5.08989 5.11939 5.23707 5.35104 5.46210 5.54102 5.56913 5.66614 6.28732 6.39666 6.82741 7.05228 7.33816 8.11048 8.33149 9.28152 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.003218 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.991196 B = 8698.370382 C = 9567.697123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 C -0.155 4.155 12 C -0.104 4.104 13 C 0.140 3.860 14 N -0.711 5.711 15 C 0.561 3.439 16 O -0.576 6.576 17 C -0.202 4.202 18 C -0.029 4.029 19 C -0.168 4.168 20 C 0.118 3.882 21 N -0.512 5.512 22 C 0.130 3.870 23 C -0.133 4.133 24 H 0.251 0.749 25 H 0.374 0.626 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -19.626 -11.892 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.033 3.967 11 C -0.195 4.195 12 C -0.122 4.122 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.348 3.652 16 O -0.457 6.457 17 C -0.207 4.207 18 C -0.055 4.055 19 C -0.187 4.187 20 C -0.038 4.038 21 N -0.221 5.221 22 C -0.028 4.028 23 C -0.172 4.172 24 H 0.060 0.940 25 H 0.207 0.793 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.210 0.790 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.066 -19.409 -11.861 22.839 hybrid contribution 0.031 0.858 0.424 0.957 sum -2.035 -18.551 -11.436 21.888 Atomic orbital electron populations 1.69812 1.06535 1.25974 1.59605 1.25535 0.96377 1.01001 1.03830 0.85104 0.78286 0.79977 0.76586 1.19067 1.22113 1.22179 1.19691 0.91505 0.85179 1.40837 0.90594 1.42316 1.05348 1.00578 1.87637 1.21386 0.95055 0.84943 0.95297 1.23776 0.97206 0.99254 0.99293 1.22561 0.98421 0.93628 0.97635 1.21383 0.98433 0.95835 0.82706 1.45954 1.62406 1.08160 1.19714 1.18334 0.77974 0.83256 0.85589 1.90743 1.53028 1.37703 1.64230 1.20972 1.06847 0.96776 0.96150 1.21972 0.91774 0.97035 0.94737 1.22537 0.99349 1.01957 0.94847 1.23667 0.92721 0.87003 1.00432 1.67779 1.13874 1.29673 1.10784 1.23182 0.91274 0.98266 0.90087 1.23327 1.00014 0.98613 0.95251 0.94036 0.79330 0.92310 0.93285 0.88973 0.89923 0.90962 0.91409 0.75285 0.83334 0.80399 0.79011 0.81516 0.87474 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.10 9.97 84.04 0.84 -12.27 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.23 5.31 -320.45 -1.70 -36.93 16 10 C 0.14 5.35 4.55 45.51 0.21 5.56 16 11 C -0.15 -4.80 7.45 31.21 0.23 -4.57 16 12 C -0.10 -2.86 3.65 -10.18 -0.04 -2.90 16 13 C 0.14 3.39 5.51 86.38 0.48 3.86 16 14 N -0.71 -16.34 5.51 -465.97 -2.57 -18.91 16 15 C 0.56 14.28 7.78 86.78 0.68 14.95 16 16 O -0.58 -18.28 16.42 -3.87 -0.06 -18.35 16 17 C -0.20 -4.27 5.89 -19.99 -0.12 -4.38 16 18 C -0.03 -0.50 9.72 22.73 0.22 -0.28 16 19 C -0.17 -1.94 10.10 22.33 0.23 -1.72 16 20 C 0.12 1.58 11.17 84.71 0.95 2.53 16 21 N -0.51 -10.15 10.35 -194.76 -2.01 -12.16 16 22 C 0.13 2.58 10.71 85.02 0.91 3.49 16 23 C -0.13 -3.93 7.38 31.12 0.23 -3.70 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.37 19.59 7.90 -92.71 -0.73 18.86 16 26 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 27 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 29 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.07 1.76 7.85 -2.38 -0.02 1.74 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.41 8.12 6.54 -92.71 -0.61 7.51 16 33 H 0.15 2.46 7.74 -2.91 -0.02 2.44 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.17 2.82 6.42 -2.91 -0.02 2.81 16 37 H 0.11 2.57 8.10 -2.39 -0.02 2.55 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.32 326.28 0.98 -69.34 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.25 Total: 30.67 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.27 Total: -3.21 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.00 Total: -126.12 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.32 0.98 -69.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090890730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.640 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds